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Mark Diekhans Coauthor index pubzone.org

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DBLP keys2012
23Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLKate R. Rosenbloom, Timothy R. Dreszer, Jeffrey C. Long, Venkat S. Malladi, Cricket A. Sloan, Brian J. Raney, Melissa S. Cline, Donna Karolchik, Galt P. Barber, Hiram Clawson, Mark Diekhans, Pauline A. Fujita, Mary Goldman, Robert C. Gravell, Rachel A. Harte, Angie S. Hinrichs, Vanessa Kirkup, Robert M. Kuhn, Katrina Learned, Morgan Maddren, Laurence R. Meyer, Andy Pohl, Brooke L. Rhead, Matthew C. Wong, Ann S. Zweig, David Haussler, W. James Kent: ENCODE whole-genome data in the UCSC Genome Browser: update 2012. Nucleic Acids Research 40(Database-Issue): 912-917 (2012)
22Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLTimothy R. Dreszer, Donna Karolchik, Ann S. Zweig, Angie S. Hinrichs, Brian J. Raney, Robert M. Kuhn, Laurence R. Meyer, Mathew Wong, Cricket A. Sloan, Kate R. Rosenbloom, Greg Roe, Brooke L. Rhead, Andy Pohl, Venkat S. Malladi, Chin H. Li, Katrina Learned, Vanessa Kirkup, Fan Hsu, Rachel A. Harte, Luvina Guruvadoo, Mary Goldman, Belinda Giardine, Pauline A. Fujita, Mark Diekhans, Melissa S. Cline, Hiram Clawson, Galt P. Barber, David Haussler, W. James Kent: The UCSC Genome Browser database: extensions and updates 2011. Nucleic Acids Research 40(Database-Issue): 918-923 (2012)
2011
21Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLWing Chung Wong, Dewey Kim, Hannah Carter, Mark Diekhans, Michael C. Ryan, Rachel Karchin: CHASM and SNVBox: toolkit for detecting biologically important single nucleotide mutations in cancer. Bioinformatics 27(15): 2147-2148 (2011)
20Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPauline A. Fujita, Brooke L. Rhead, Ann S. Zweig, Angie S. Hinrichs, Donna Karolchik, Melissa S. Cline, Mary Goldman, Galt P. Barber, Hiram Clawson, Antonio Coelho, Mark Diekhans, Timothy R. Dreszer, Belinda Giardine, Rachel A. Harte, Jennifer Hillman-Jackson, Fan Hsu, Vanessa Kirkup, Robert M. Kuhn, Katrina Learned, Chin H. Li, Laurence R. Meyer, Andy Pohl, Brian J. Raney, Kate R. Rosenbloom, Kayla E. Smith, David Haussler, W. James Kent: The UCSC Genome Browser database: update 2011. Nucleic Acids Research 39(Database-Issue): 876-882 (2011)
2010
19Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLBenedict Paten, Mark Diekhans, Dent Earl, John St. John, Jian Ma, Bernard B. Suh, David Haussler: Cactus Graphs for Genome Comparisons. RECOMB 2010: 410-425
18Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLBrooke L. Rhead, Donna Karolchik, Robert M. Kuhn, Angie S. Hinrichs, Ann S. Zweig, Pauline A. Fujita, Mark Diekhans, Kayla E. Smith, Kate R. Rosenbloom, Brian J. Raney, Andy Pohl, Michael Pheasant, Laurence R. Meyer, Katrina Learned, Fan Hsu, Jennifer Hillman-Jackson, Rachel A. Harte, Belinda Giardine, Timothy R. Dreszer, Hiram Clawson, Galt P. Barber, David Haussler, W. James Kent: The UCSC Genome Browser database: update 2010. Nucleic Acids Research 38(Database-Issue): 613-619 (2010)
2009
17Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLMichael C. Ryan, Mark Diekhans, Stephanie Lien, Yun Liu, Rachel Karchin: LS-SNP/PDB: annotated non-synonymous SNPs mapped to Protein Data Bank structures. Bioinformatics 25(11): 1431-1432 (2009)
16Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLRobert M. Kuhn, Donna Karolchik, Ann S. Zweig, Ting Wang, Kayla E. Smith, Kate R. Rosenbloom, Brooke L. Rhead, Brian J. Raney, Andy Pohl, Michael Pheasant, Laurence R. Meyer, Fan Hsu, Angela S. Hinrichs, Rachel A. Harte, Belinda Giardine, Pauline A. Fujita, Mark Diekhans, Timothy R. Dreszer, Hiram Clawson, Galt P. Barber, David Haussler, W. James Kent: The UCSC Genome Browser Database: update 2009. Nucleic Acids Research 37(Database-Issue): 755-761 (2009)
2008
15Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLMario Stanke, Mark Diekhans, Robert Baertsch, David Haussler: Using native and syntenically mapped cDNA alignments to improve de novo gene finding. Bioinformatics 24(5): 637-644 (2008)
14Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLDonna Karolchik, Robert M. Kuhn, Robert Baertsch, Galt P. Barber, Hiram Clawson, Mark Diekhans, Belinda Giardine, Rachel A. Harte, Angela S. Hinrichs, Fan Hsu, Kord M. Kober, Webb Miller, Jakob Skou Pedersen, Andy Pohl, Brian J. Raney, Brooke L. Rhead, Kate R. Rosenbloom, Kayla E. Smith, Mario Stanke, Archana Thakkapallayil, Heather Trumbower, Ting Wang, Ann S. Zweig, David Haussler, W. James Kent: The UCSC Genome Browser Database: 2008 update. Nucleic Acids Research 36(Database-Issue): 773-779 (2008)
2007
13Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLRobert M. Kuhn, Donna Karolchik, Ann S. Zweig, Heather Trumbower, Daryl J. Thomas, Archana Thakkapallayil, Charles W. Sugnet, Mario Stanke, Kayla E. Smith, Adam C. Siepel, Kate R. Rosenbloom, Brooke L. Rhead, Brian J. Raney, Andy Pohl, Jakob Skou Pedersen, Fan Hsu, Angela S. Hinrichs, Rachel A. Harte, Mark Diekhans, Hiram Clawson, Gill Bejerano, Galt P. Barber, Robert Baertsch, David Haussler, W. James Kent: The UCSC genome browser database: update 2007. Nucleic Acids Research 35(Database-Issue): 668-673 (2007)
12Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLJingchun Zhu, J. Zachary Sanborn, Mark Diekhans, Craig B. Lowe, Tom H. Pringle, David Haussler: Comparative Genomics Search for Losses of Long-Established Genes on the Human Lineage. PLoS Computational Biology 3(12): (2007)
2006
11Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLFan Hsu, W. James Kent, Hiram Clawson, Robert M. Kuhn, Mark Diekhans, David Haussler: The UCSC Known Genes. Bioinformatics 22(9): 1036-1046 (2006)
10Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLAngela S. Hinrichs, Donna Karolchik, Robert Baertsch, Galt P. Barber, Gill Bejerano, Hiram Clawson, Mark Diekhans, Terrence S. Furey, Rachel A. Harte, Fan Hsu, Jennifer Hillman-Jackson, Robert M. Kuhn, Jakob Skou Pedersen, Andy Pohl, Brian J. Raney, Kate R. Rosenbloom, Adam C. Siepel, Kayla E. Smith, Charles W. Sugnet, A. Sultan-Qurraie, Daryl J. Thomas, Heather Trumbower, R. J. Weber, M. Weirauch, Ann S. Zweig, David Haussler, W. James Kent: The UCSC Genome Browser Database: update 2006. Nucleic Acids Research 34(Database-Issue): 590-598 (2006)
2005
9Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLRachel Karchin, Mark Diekhans, Libusha Kelly, Daryl J. Thomas, Ursula Pieper, Narayanan Eswar, David Haussler, Andrej Sali: LS-SNP: large-scale annotation of coding non-synonymous SNPs based on multiple information sources. Bioinformatics 21(12): 2814-2820 (2005)
8Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLAndrea Di Blas, David M. Dahle, Mark Diekhans, Leslie Grate, Jeffrey D. Hirschberg, Kevin Karplus, Hansjörg Keller, Mark Kendrick, Francisco J. Mesa-Martinez, David Pease, Eric Rice, Angela Schultz, Don Speck, Richard Hughey: The UCSC Kestrel Parallel Processor. IEEE Trans. Parallel Distrib. Syst. 16(1): 80-92 (2005)
7Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLFan Hsu, Tom H. Pringle, Robert M. Kuhn, Donna Karolchik, Mark Diekhans, David Haussler, W. James Kent: The UCSC Proteome Browser. Nucleic Acids Research 33(Database-Issue): 454-458 (2005)
2004
6Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLKrishna M. Roskin, Mark Diekhans, David Haussler: Score Functions for Determining Regional Conservation in Two-Species Local Alignments. Journal of Computational Biology 11(2/3): 395-411 (2004)
2003
5Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLKrishna M. Roskin, Mark Diekhans, David Haussler: Scoring two-species local alignments to try to statistically separate neutrally evolving from selected DNA segments. RECOMB 2003: 257-266
4Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLDonna Karolchik, Robert Baertsch, Mark Diekhans, Terrence S. Furey, Angela S. Hinrichs, Y. T. Lu, Krishna M. Roskin, M. Schwartz, Charles W. Sugnet, Daryl J. Thomas, R. J. Weber, David Haussler, W. James Kent: The UCSC Genome Browser Database. Nucleic Acids Research 31(1): 51-54 (2003)
2001
3Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLLeslie Grate, Mark Diekhans, David M. Dahle, Richard Hughey: Sequence Analysis With the Kestrel SIMD Parallel Processor. Pacific Symposium on Biocomputing 2001: 263-274
2000
2no EE pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLTommi Jaakkola, Mark Diekhans, David Haussler: A Discriminative Framework for Detecting Remote Protein Homologies. Journal of Computational Biology 7(1-2): 95-114 (2000)
1999
1no EE pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLTommi Jaakkola, Mark Diekhans, David Haussler: Using the Fisher Kernel Method to Detect Remote Protein Homologies. ISMB 1999: 149-158

Coauthor Index

1Robert Baertsch [4] [10] [13] [14] [15]
2Galt P. Barber [10] [13] [14] [16] [18] [20] [22] [23]
3Gill Bejerano [10] [13]
4Andrea Di Blas [8]
5Hannah Carter [21]
6Hiram Clawson [10] [11] [13] [14] [16] [18] [20] [22] [23]
7Melissa S. Cline [20] [22] [23]
8Antonio Coelho [20]
9David M. Dahle [3] [8]
10Timothy R. Dreszer [16] [18] [20] [22] [23]
11Dent Earl [19]
12Narayanan Eswar [9]
13Pauline A. Fujita [16] [18] [20] [22] [23]
14Terrence S. Furey [4] [10]
15Belinda Giardine [14] [16] [18] [20] [22]
16Mary Goldman [20] [22] [23]
17Leslie Grate [3] [8]
18Robert C. Gravell [23]
19Luvina Guruvadoo [22]
20Rachel A. Harte [10] [13] [14] [16] [18] [20] [22] [23]
21David Haussler [1] [2] [4] [5] [6] [7] [9] [10] [11] [12] [13] [14] [15] [16] [18] [19] [20] [22] [23]
22Jennifer Hillman-Jackson [10] [18] [20]
23Angela S. Hinrichs [4] [10] [13] [14] [16]
24Angie S. Hinrichs [18] [20] [22] [23]
25Jeffrey D. Hirschberg [8]
26Fan Hsu [7] [10] [11] [13] [14] [16] [18] [20] [22]
27Richard Hughey [3] [8]
28Tommi Jaakkola [1] [2]
29John St. John [19]
30Rachel Karchin [9] [17] [21]
31Donna Karolchik [4] [7] [10] [13] [14] [16] [18] [20] [22] [23]
32Kevin Karplus [8]
33Hansjörg Keller [8]
34Libusha Kelly [9]
35Mark Kendrick [8]
36W. James Kent [4] [7] [10] [11] [13] [14] [16] [18] [20] [22] [23]
37Dewey Kim [21]
38Vanessa Kirkup [20] [22] [23]
39Kord M. Kober [14]
40Robert M. Kuhn [7] [10] [11] [13] [14] [16] [18] [20] [22] [23]
41Katrina Learned [18] [20] [22] [23]
42Chin H. Li [20] [22]
43Stephanie Lien [17]
44Yun Liu [17]
45Jeffrey C. Long [23]
46Craig B. Lowe [12]
47Y. T. Lu [4]
48Jian Ma [19]
49Morgan Maddren [23]
50Venkat S. Malladi [22] [23]
51Francisco J. Mesa-Martinez [8]
52Laurence R. Meyer [16] [18] [20] [22] [23]
53Webb Miller (Webb C. Miller) [14]
54Benedict Paten [19]
55David Pease [8]
56Jakob Skou Pedersen [10] [13] [14]
57Michael Pheasant [16] [18]
58Ursula Pieper [9]
59Andy Pohl [10] [13] [14] [16] [18] [20] [22] [23]
60Tom H. Pringle [7] [12]
61Brian J. Raney [10] [13] [14] [16] [18] [20] [22] [23]
62Brooke L. Rhead [13] [14] [16] [18] [20] [22] [23]
63Eric Rice [8]
64Greg Roe [22]
65Kate R. Rosenbloom [10] [13] [14] [16] [18] [20] [22] [23]
66Krishna M. Roskin [4] [5] [6]
67Michael C. Ryan [17] [21]
68Andrej Sali [9]
69J. Zachary Sanborn [12]
70Angela Schultz [8]
71M. Schwartz [4]
72Adam C. Siepel [10] [13]
73Cricket A. Sloan [22] [23]
74Kayla E. Smith [10] [13] [14] [16] [18] [20]
75Don Speck [8]
76Mario Stanke [13] [14] [15]
77Charles W. Sugnet [4] [10] [13]
78Bernard B. Suh [19]
79A. Sultan-Qurraie [10]
80Archana Thakkapallayil [13] [14]
81Daryl J. Thomas [4] [9] [10] [13]
82Heather Trumbower [10] [13] [14]
83Ting Wang [14] [16]
84R. J. Weber [4] [10]
85M. Weirauch [10]
86Mathew Wong [22]
87Matthew C. Wong [23]
88Wing Chung Wong [21]
89Jingchun Zhu [12]
90Ann S. Zweig [10] [13] [14] [16] [18] [20] [22] [23]

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