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| 2012 | ||
|---|---|---|
| 27 | Alexis Lamiable, Dominique Barth, Alain Denise, Franck Quessette, Sandrine Vial, Eric Westhof: Automated prediction of three-way junction topological families in RNA secondary structures. Computational Biology and Chemistry 37: 1-5 (2012) | |
| 26 | Alain Denise, Marie-Claude Gaudel, Sandrine-Dominique Gouraud, Richard Lassaigne, Johan Oudinet, Sylvain Peyronnet: Coverage-biased random exploration of large models and application to testing. STTT 14(1): 73-93 (2012) | |
| 2011 | ||
| 25 | Johan Oudinet, Alain Denise, Marie-Claude Gaudel, Richard Lassaigne, Sylvain Peyronnet: Uniform Monte-Carlo Model Checking. FASE 2011: 127-140 | |
| 24 | Sarah Cohen Boulakia, Alain Denise, Sylvie Hamel: Using Medians to Generate Consensus Rankings for Biological Data. SSDBM 2011: 73-90 | |
| 2010 | ||
| 23 | Alain Denise, Yann Ponty, Michel Termier: Controlled non uniform random generation of decomposable structures CoRR abs/1006.0423: (2010) | |
| 22 | Guillaume Blin, Alain Denise, Serge Dulucq, Claire Herrbach, Hélène Touzet: Alignments of RNA Structures. IEEE/ACM Trans. Comput. Biology Bioinform. 7(2): 309-322 (2010) | |
| 21 | Claire Herrbach, Alain Denise, Serge Dulucq: Average complexity of the Jiang-Wang-Zhang pairwise tree alignment algorithm and of a RNA secondary structure alignment algorithm. Theor. Comput. Sci. 411(26-28): 2423-2432 (2010) | |
| 20 | Alain Denise, Yann Ponty, Michel Termier: Controlled non-uniform random generation of decomposable structures. Theor. Comput. Sci. 411(40-42): 3527-3552 (2010) | |
| 2009 | ||
| 19 | Kévin Darty, Alain Denise, Yann Ponty: VARNA: Interactive drawing and editing of the RNA secondary structure. Bioinformatics 25(15): 1974-1975 (2009) | |
| 2008 | ||
| 18 | Marie-Claude Gaudel, Alain Denise, Sandrine-Dominique Gouraud, Richard Lassaigne, Johan Oudinet, Sylvain Peyronnet: Coverage-biased Random Exploration of Models. Electr. Notes Theor. Comput. Sci. 220(1): 3-14 (2008) | |
| 17 | Romain Rivière, Dominique Barth, Johanne Cohen, Alain Denise: Shuffling biological sequences with motif constraints. J. Discrete Algorithms 6(2): 192-204 (2008) | |
| 2006 | ||
| 16 | Alain Denise, Marie-Claude Gaudel, Sandrine-Dominique Gouraud, Richard Lassaigne, Sylvain Peyronnet: Uniform random sampling of traces in very large models. Random Testing 2006: 10-19 | |
| 15 | Yann Ponty, Michel Termier, Alain Denise: GenRGenS: software for generating random genomic sequences and structures. Bioinformatics 22(12): 1534-1535 (2006) | |
| 14 | Alain Denise, Marie-Claude Gaudel, Sandrine-Dominique Gouraud, Richard Lassaigne, Sylvain Peyronnet: Uniform Random Sampling of Traces in Very Large Models CoRR abs/cs/0606086: (2006) | |
| 2005 | ||
| 13 | Elodie Nédélec, Thomas Moncion, Elisabeth Gassiat, Bruno Bossard, Guillemette Duchateau-Nguyen, Alain Denise, Michel Termier: A Pairwise Alignment Algorithm Which Favors Clusters of Blocks. Journal of Computational Biology 12(1): 33-47 (2005) | |
| 2004 | ||
| 12 | Alain Denise, Marie-Claude Gaudel, Sandrine-Dominique Gouraud: A Generic Method for Statistical Testing. ISSRE 2004: 25-34 | |
| 11 | Cyril Banderier, Philippe Flajolet, Danièle Gardy, Mireille Bousquet-Mélou, Alain Denise, Dominique Gouyou-Beauchamps: Generating functions for generating trees CoRR math.CO/0411250: (2004) | |
| 10 | Mireille Régnier, Alain Denise: Rare Events and Conditional Events on Random Strings. Discrete Mathematics & Theoretical Computer Science 6(2): 191-214 (2004) | |
| 2003 | ||
| 9 | Michaël Bekaert, Laure Bidou, Alain Denise, Guillemette Duchateau-Nguyen, Jean-Paul Forest, Christine Froidevaux, Isabelle Hatin, Jean-Pierre Rousset, Michel Termier: Towards a computational model for -1 eukaryotic frameshifting sites. Bioinformatics 19(3): 327-335 (2003) | |
| 8 | Sylvie Corteel, Mario Valencia-Pabon, Danièle Gardy, Dominique Barth, Alain Denise: The permutation-path coloring problem on trees. Theor. Comput. Sci. 297(1-3): 119-143 (2003) | |
| 2002 | ||
| 7 | Cyril Banderier, Mireille Bousquet-Mélou, Alain Denise, Philippe Flajolet, Danièle Gardy, Dominique Gouyou-Beauchamps: Generating functions for generating trees. Discrete Mathematics 246(1-3): 29-55 (2002) | |
| 2001 | ||
| 6 | Sandrine-Dominique Gouraud, Alain Denise, Marie-Claude Gaudel, B. Marr: A New Way of Automating Statistical Testing Methods. ASE 2001: 5-12 | |
| 5 | Alain Denise, Mireille Régnier, Mathias Vandenbogaert: Assessing the Statistical Significance of Overrepresented Oligonucleotides. WABI 2001: 85-97 | |
| 2000 | ||
| 4 | Dominique Barth, Sylvie Corteel, Alain Denise, Danièle Gardy, Mario Valencia-Pabon: On the Complexity of Routing Permutations on Trees by Arc-Disjoint Paths. Extended Abstract. LATIN 2000: 308-317 | |
| 1999 | ||
| 3 | Alain Denise, Paul Zimmermann: Uniform Random Generation of Decomposable Structures Using Floating-Point Arithmetic. Theor. Comput. Sci. 218(2): 233-248 (1999) | |
| 1996 | ||
| 2 | Alain Denise: Génération aléatoire uniforme de mots de langages rationnels. Theor. Comput. Sci. 159(1): 43-63 (1996) | |
| 1995 | ||
| 1 | Alain Denise, Rodica Simion: Two combinatorial statistics on Dyck paths. Discrete Mathematics 137(1-3): 155-176 (1995) | |
Colors in the list of coauthors
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