 | 2011 |
| 9 |  | Huaiyu Mi,
Anushya Muruganujan,
Emek Demir,
Yukiko Matsuoka,
Akira Funahashi,
Hiroaki Kitano,
Paul D. Thomas:
BioPAX support in CellDesigner.
Bioinformatics 27(24): 3437-3438 (2011) |
| 8 |  | Ethan G. Cerami,
Benjamin E. Gross,
Emek Demir,
Igor Rodchenkov,
Özgün Babur,
Nadia Anwar,
Nikolaus Schultz,
Gary D. Bader,
Chris Sander:
Pathway Commons, a web resource for biological pathway data.
Nucleic Acids Research 39(Database-Issue): 685-690 (2011) |
| 2010 |
| 7 |  | Ozgun Babur,
Ugur Dogrusöz,
Emek Demir,
Chris Sander:
ChiBE: interactive visualization and manipulation of BioPAX pathway models.
Bioinformatics 26(3): 429-431 (2010) |
| 2009 |
| 6 |  | Ugur Dogrusöz,
Ahmet Cetintas,
Emek Demir,
Ozgun Babur:
Algorithms for effective querying of compound graph-based pathway databases.
BMC Bioinformatics 10: 376 (2009) |
| 5 |  | Ugur Dogrusöz,
Erhan Giral,
Ahmet Cetintas,
Ali Civril,
Emek Demir:
A layout algorithm for undirected compound graphs.
Inf. Sci. 179(7): 980-994 (2009) |
| 2006 |
| 4 |  | Ugur Dogrusöz,
E. Z. Erson,
Erhan Giral,
Emek Demir,
Ozgun Babur,
Ahmet Cetintas,
R. Colak:
Patikaweb: a Web interface for analyzing biological pathways through advanced querying and visualization.
Bioinformatics 22(3): 374-375 (2006) |
| 2004 |
| 3 |  | Ugur Dogrusöz,
Erhan Giral,
Ahmet Cetintas,
Ali Civril,
Emek Demir:
A Compound Graph Layout Algorithm for Biological Pathways.
Graph Drawing 2004: 442-447 |
| 2 |  | Emek Demir,
Ozgun Babur,
Ugur Dogrusöz,
Attila Gürsoy,
A. Ayaz,
Gürcan Gülesir,
Gurkan Nisanci,
Rengül Çetin-Atalay:
An ontology for collaborative construction and analysis of cellular pathways.
Bioinformatics 20(3): 349-356 (2004) |
| 2002 |
| 1 |  | Emek Demir,
Ozgun Babur,
Ugur Dogrusöz,
Attila Gürsoy,
Gurkan Nisanci,
Rengül Çetin-Atalay,
Mehmet Ozturk:
PATIKA: an integrated visual environment for collaborative construction and analysis of cellular pathways.
Bioinformatics 18(7): 996-1003 (2002) |