Robert Clarke

	2012
39		Xi Chen, Chen Wang, Ayesha N. Shajahan, Rebecca B. Riggins, Robert Clarke, Jianhua Xuan: Reconstruction of Transcription Regulatory Networks by Stability-Based Network Component Analysis. ISBRA 2012: 36-47
38		Chen Wang, Jianhua Xuan, Ie-Ming Shih, Robert Clarke, Yue Wang: Regulatory component analysis: A semi-blind extraction approach to infer gene regulatory networks with imperfect biological knowledge. Signal Processing 92(8): 1902-1915 (2012)
	2011
37		Ting Gong, Jianhua Xuan, Li Chen, Rebecca B. Riggins, Huai Li, Eric P. Hoffman, Robert Clarke, Yue Wang: Motif-guided sparse decomposition of gene expression data for regulatory module identification. BMC Bioinformatics 12: 82 (2011)
36		Guoqiang Yu, Huai Li, Sook S. Ha, Ie-Ming Shih, Robert Clarke, Eric P. Hoffman, Subha Madhavan, Jianhua Xuan, Yue Joseph Wang: PUGSVM: a caBIGTM analytical tool for multiclass gene selection and predictive classification. Bioinformatics 27(5): 736-738 (2011)
35		Bai Zhang, Ye Tian, Lu Jin, Huai Li, Ie-Ming Shih, Subha Madhavan, Robert Clarke, Eric P. Hoffman, Jianhua Xuan, Leena Hilakivi-Clarke, Yue Wang: DDN: a caBIG® analytical tool for differential network analysis. Bioinformatics 27(7): 1036-1038 (2011)
	2010
34		Yuji Zhang, Jianhua Jason Xuan, Robert Clarke, Habtom W. Ressom: Module-based biomarker discovery in breast cancer. BIBM 2010: 352-356
33		Jinghua Gu, Jianhua Xuan, Yue Joseph Wang, Rebecca B. Riggins, Robert Clarke: Identification of Transcriptional Regulatory Networks by Learning the Marginal Function of Outlier Sum Statistic. ICMLA 2010: 281-286
32		Chen Wang, Jianhua Xuan, Huai Li, Yue Joseph Wang, Ming Zhan, Eric P. Hoffman, Robert Clarke: Knowledge-guided gene ranking by coordinative component analysis. BMC Bioinformatics 11: 162 (2010)
31		Li Chen, Jianhua Xuan, Rebecca B. Riggins, Yue Joseph Wang, Eric P. Hoffman, Robert Clarke: Multilevel support vector regression analysis to identify condition-specific regulatory networks. Bioinformatics 26(11): 1416-1422 (2010)
30		Guoqiang Yu, Yuanjian Feng, David J. Miller, Jianhua Xuan, Eric P. Hoffman, Robert Clarke, Ben Davidson, Ie-Ming Shih, Yue Wang: Matched Gene Selection and Committee Classifier for Molecular Classification of Heterogeneous Diseases. Journal of Machine Learning Research 11: 2141-2167 (2010)
	2009
29		Ting Gong, Jianhua Jason Xuan, Rebecca B. Riggins, Robert Clarke: A Systems Biology Approach to Identify Affected Regulatory and Signaling Circuits in Protein Interaction Networks. IJCBS 2009: 297-300
28		Bai Zhang, Huai Li, Rebecca B. Riggins, Ming Zhan, Jianhua Xuan, Zhen Zhang, Eric P. Hoffman, Robert Clarke, Yue Joseph Wang: Differential dependency network analysis to identify condition-specific topological changes in biological networks. Bioinformatics 25(4): 526-532 (2009)
27		Li Chen, Jianhua Xuan, Yue Joseph Wang, Eric P. Hoffman, Rebecca B. Riggins, Robert Clarke: Identification of condition-specific regulatory modules through multi-level motif and mRNA expression analysis. I. J. Computational Biology and Drug Design 2(1): 1-20 (2009)
26		Li Chen, Jianhua Xuan, Chen Wang, Yue Joseph Wang, Ie-Ming Shih, Tian-Li Wang, Zhen Zhang, Robert Clarke, Eric P. Hoffman: Biomarker identification by knowledge-driven multilevel ICA and motif analysis. IJDMB 3(4): 365-381 (2009)
	2008
25		Chen Wang, Jianhua Xuan, Li Chen, Eric P. Hoffman, Robert Clarke: Reliability Analysis of Transcriptional Regulatory Networks. BCBGC 2008: 42-48
24		Jianghui Xiong, Chen Wang, Bai Zhang, Yue Joseph Wang, Eric P. Hoffman, Robert Clarke, Jianhua Xuan: Inferring Condition-Specific miRNA-Gene Modules from miRNA and mRNA Profiling Data. BCBGC 2008: 49-55
23		Ting Gong, Jianhua Xuan, Rebecca B. Riggins, Yue Joseph Wang, Eric P. Hoffman, Robert Clarke: Exploring Transcriptional Modules Through Integrative Gene Clustering Guided by Transcription Factor Binding Information. BIOCOMP 2008: 191-197
22		Li Chen, Jianhua Xuan, Rebecca B. Riggins, Yue Joseph Wang, Eric P. Hoffman, Robert Clarke: Identification of Condition-specific Regulatory Modules by Multi-level Motif and mRNA Expression Analysis. BIOCOMP 2008: 23-28
21		Yuji Zhang, Jianhua Xuan, Benildo de los Reyes, Robert Clarke, Habtom W. Ressom: Reverse Engineering Module Networks by PSO-RNN Hybrid Modeling. BIOCOMP 2008: 401-407
20		Li Chen, Jianhua Xuan, Yue Joseph Wang, Rebecca B. Riggins, Robert Clarke: Network-Constrained Support Vector Machine for Classification. ICMLA 2008: 60-65
19		Chen Wang, Jianhua Xuan, Li Chen, Po Zhao, Yue Joseph Wang, Robert Clarke, Eric P. Hoffman: Integrative Network Component Analysis for Regulatory Network Reconstruction. ISBRA 2008: 196-207
18		Ting Gong, Jianhua Xuan, Li Chen, Rebecca B. Riggins, Yue Joseph Wang, Eric P. Hoffman, Robert Clarke: Sparse Decomposition of Gene Expression Data to Infer Transcriptional Modules Guided by Motif Information. ISBRA 2008: 244-255
17		Li Chen, Jianhua Xuan, Chen Wang, Ie-Ming Shih, Yue Joseph Wang, Zhen Zhang, Eric P. Hoffman, Robert Clarke: Knowledge-guided multi-scale independent component analysis for biomarker identification. BMC Bioinformatics 9: (2008)
16		Chen Wang, Jianhua Xuan, Li Chen, Po Zhao, Yue Joseph Wang, Robert Clarke, Eric P. Hoffman: Motif-directed network component analysis for regulatory network inference. BMC Bioinformatics 9(S-1): (2008)
15		Yuji Zhang, Jianhua Xuan, Benildo de los Reyes, Robert Clarke, Habtom W. Ressom: Network motif-based identification of transcription factor-target gene relationships by integrating multi-source biological data. BMC Bioinformatics 9: (2008)
14		Yitan Zhu, Huai Li, David J. Miller, Zuyi Wang, Jianhua Xuan, Robert Clarke, Eric P. Hoffman, Yue Joseph Wang: caBIGTM VISDA: Modeling, visualization, and discovery for cluster analysis of genomic data. BMC Bioinformatics 9: (2008)
	2007
13		Chen Wang, Jianhua Xuan, Ting Gong, Robert Clarke, Eric P. Hoffman, Yue Joseph Wang: Stability-Based Dimension Estimation of ICA with Application to Microarray Data Analysis. BIOCOMP 2007: 132-138
12		Li Chen, Chen Wang, Ie-Ming Shih, Tian-Li Wang, Zhen Zhang, Yue Joseph Wang, Robert Clarke, Eric P. Hoffman, Jianhua Xuan: Biomarker Identification by Knowledge-Driven Multi-Level ICA and Motif Analysis. ICMLA 2007: 560-566
11		Jiajing Wang, Huai Li, Yitan Zhu, Malik Yousef, Michael Nebozhyn, Michael M. Showe, Louise C. Showe, Jianhua Xuan, Robert Clarke, Yue Joseph Wang: VISDA: an open-source caBIGTM analytical tool for data clustering and beyond. Bioinformatics 23(15): 2024-2027 (2007)
10		Jianhua Xuan, Yue Joseph Wang, Yibin Dong, Yuanjian Feng, Bin Wang, Javed I. Khan, Marina Bakay, Zuyi Wang, Lauren Pachman, Sara Winokur, Yi-Wen Chen, Robert Clarke, Eric P. Hoffman: Gene Selection for Multiclass Prediction by Weighted Fisher Criterion. EURASIP J. Bioinformatics and Systems Biology 2007: (2007)
	2006
9		Justin Molineaux, Jianhua Xuan, Ting Gong, Yitan Zhu, Eric P. Hoffman, Robert Clarke, Yue Joseph Wang: ModVis: An information visualization tool for gene module discovery. CAINE 2006: 24-31
8		Habtom W. Ressom, Yuji Zhang, Jianhua Xuan, Yue Joseph Wang, Robert Clarke: Inference of Gene Regulatory Networks from Time Course Gene Expression Data Using Neural Networks and Swarm Intelligence. CIBCB 2006: 1-8
7		Zuyi Wang, Yue Joseph Wang, Jianhua Xuan, Yibin Dong, Marina Bakay, Yuanjian Feng, Robert Clarke, Eric P. Hoffman: Optimized multilayer perceptrons for molecular classification and diagnosis using genomic data. Bioinformatics 22(6): 755-761 (2006)
	2005
6		Jianhua Xuan, Eric P. Hoffman, Robert Clarke, Yue Joseph Wang: Normalization of Microarray Data by Iterative Nonlinear Regression. BIBE 2005: 267-270
5		Angela S. L. Wong, Matthew Sorell, Robert Clarke: Secure Mutual Distrust Transaction Tracking Using Cryptographic Elements. IWDW 2005: 459-469
	2004
4		Jianhua Xuan, Yibin Dong, Javed I. Khan, Eric P. Hoffman, Robert Clarke, Yue Joseph Wang: Robust Feature Selection by Weighted Fisher Criterion for Multiclass Prediction in Gene Expression Profiling. ICPR (2) 2004: 291-294
3		Junying Zhang, Yue Joseph Wang, Javed I. Khan, Robert Clarke: Gene selection in class space for molecular classification of cancer. Science in China Series F: Information Sciences 47(3): 301-314 (2004)
	2003
2		Zuyi Wang, Yue Joseph Wang, Jianping Lu, Sun-Yuan Kung, Junying Zhang, Richard Lee, Jianhua Xuan, Javed I. Khan, Robert Clarke: Discriminatory Mining of Gene Expression Microarray Data. VLSI Signal Processing 35(3): 255-272 (2003)
	2002
1		Yue Joseph Wang, Jianping Lu, Richard Lee, Zhiping Gu, Robert Clarke: Iterative normalization of cDNA microarray data. IEEE Transactions on Information Technology in Biomedicine 6(1): 29-37 (2002)

Coauthor Index

1	Marina Bakay	[7] [10]
2	Li Chen	[12] [16] [17] [18] [19] [20] [22] [25] [26] [27] [31] [37]
3	Xi Chen	[39]
4	Yi-Wen Chen	[10]
5	Ben Davidson	[30]
6	Yibin Dong	[4] [7] [10]
7	Yuanjian Feng	[7] [10] [30]
8	Ting Gong	[9] [13] [18] [23] [29] [37]
9	Jinghua Gu	[33]
10	Zhiping Gu	[1]
11	Sook S. Ha	[36]
12	Leena Hilakivi-Clarke	[35]
13	Eric P. Hoffman	[4] [6] [7] [9] [10] [12] [13] [14] [16] [17] [18] [19] [22] [23] [24] [25] [26] [27] [28] [30] [31] [32] [35] [36] [37]
14	Lu Jin	[35]
15	Javed I. Khan	[2] [3] [4] [10]
16	Sun-Yuan Kung	[2]
17	Richard Lee	[1] [2]
18	Huai Li	[11] [14] [28] [32] [35] [36] [37]
19	Jianping Lu	[1] [2]
20	Subha Madhavan	[35] [36]
21	David J. Miller	[14] [30]
22	Justin Molineaux	[9]
23	Michael Nebozhyn	[11]
24	Lauren Pachman	[10]
25	Habtom W. Ressom	[8] [15] [21] [34]
26	Benildo de los Reyes	[15] [21]
27	Rebecca B. Riggins	[18] [20] [22] [23] [27] [28] [29] [31] [33] [37] [39]
28	Ayesha N. Shajahan	[39]
29	Ie-Ming Shih	[12] [17] [26] [30] [35] [36] [38]
30	Louise C. Showe	[11]
31	Michael M. Showe	[11]
32	Matthew Sorell	[5]
33	Ye Tian	[35]
34	Bin Wang	[10]
35	Chen Wang	[12] [13] [16] [17] [19] [24] [25] [26] [32] [38] [39]
36	Jiajing Wang	[11]
37	Tian-Li Wang	[12] [26]
38	Yue Wang	[30] [35] [37] [38]
39	Yue Joseph Wang	[1] [2] [3] [4] [6] [7] [8] [9] [10] [11] [12] [13] [14] [16] [17] [18] [19] [20] [22] [23] [24] [26] [27] [28] [31] [32] [33] [36]
40	Zuyi Wang	[2] [7] [10] [14]
41	Sara Winokur	[10]
42	Angela S. L. Wong	[5]
43	Jianghui Xiong	[24]
44	Jianhua Xuan (Jianhua Jason Xuan)	[2] [4] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] [22] [23] [24] [25] [26] [27] [28] [29] [30] [31] [32] [33] [34] [35] [36] [37] [38] [39]
45	Malik Yousef	[11]
46	Guoqiang Yu	[30] [36]
47	Ming Zhan	[28] [32]
48	Bai Zhang	[24] [28] [35]
49	Junying Zhang	[2] [3]
50	Yuji Zhang	[8] [15] [21] [34]
51	Zhen Zhang	[12] [17] [26] [28]
52	Po Zhao	[16] [19]
53	Yitan Zhu	[9] [11] [14]

Colors in the list of coauthors

Last update Tue May 29 01:28:40 2012 CET by the DBLP Team — Data released under the ODC-BY 1.0 license — See also our legal information page