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| 2012 | ||
|---|---|---|
| 56 | Xiujun Zhang, Xing-Ming Zhao, Kun He, Le Lu, Yongwei Cao, Jingdong Liu, Jin-Kao Hao, Zhi-Ping Liu, Luonan Chen: Inferring gene regulatory networks from gene expression data by path consistency algorithm based on conditional mutual information. Bioinformatics 28(1): 98-104 (2012) | |
| 55 | Xiaoping Liu, Zhi-Ping Liu, Xing-Ming Zhao, Luonan Chen: Identifying disease genes and module biomarkers by differential interactions. JAMIA 19(2): 241-248 (2012) | |
| 2011 | ||
| 54 | Zhi-Ping Liu, Jiguang Wang, Yu-Qing Qiu, Ross K. K. Leung, Xiang-Sun Zhang, Stephen Kwok-Wing Tsui, Luonan Chen: Inferring Protein-Protein Interactions Based on Sequences and Interologs in Mycobacterium Tuberculosis. ICIC (3) 2011: 91-96 | |
| 53 | Ruiqi Wang, Kaihui Liu, Luonan Chen, Kazuyuki Aihara: Neural fate decisions mediated by trans-activation and cis-inhibition in Notch signaling. Bioinformatics 27(22): 3158-3165 (2011) | |
| 2010 | ||
| 52 | Taesung Park, Stephen Kwok-Wing Tsui, Luonan Chen, Michael K. Ng, Limsoon Wong, Xiaohua Hu: 2010 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2010, Hong Kong, China, 18 - 21 December 2010, Proceedings IEEE Computer Society 2010 | |
| 51 | Zhi-Ping Liu, Xiang-Sun Zhang, Luonan Chen: Inferring gene regulatory networks from expression data with prior knowledge by linear programming. ICMLC 2010: 3067-3072 | |
| 50 | Yu-Qing Qiu, Shi-Hua Zhang, Xiang-Sun Zhang, Luonan Chen: Detecting disease associated modules and prioritizing active genes based on high throughput data. BMC Bioinformatics 11: 26 (2010) | |
| 49 | Zhi-Ping Liu, Ling-Yun Wu, Yong Wang, Xiang-Sun Zhang, Luonan Chen: Prediction of protein-RNA binding sites by a random forest method with combined features. Bioinformatics 26(13): 1616-1622 (2010) | |
| 2009 | ||
| 48 | Xing-Ming Zhao, Luonan Chen: A New Balanced Ensemble Classifier for Predicting Fungi Protein Subcellular Localization Based on Protein Primary Structures. BMEI 2009: 1-5 | |
| 47 | Yu Lu, Luonan Chen: Analysis and Optimality on Network Traffic Flows. CSIE (2) 2009: 39-43 | |
| 46 | Bing Wang, Yuexing Han, Luonan Chen, Kazuyuki Aihara: Multiple Phase Transitions in the Culture Dissemination. Complex (1) 2009: 286-290 | |
| 45 | Zhi-Ping Liu, Yong Wang, Tieqiao Wen, Xiang-Sun Zhang, Weiming Xia, Luonan Chen: Dynamically dysfunctional protein interactions in the development of Alzheimer's disease. SMC 2009: 4262-4267 | |
| 44 | Shi-Hua Zhang, Rui-Sheng Wang, Xiang-Sun Zhang, Luonan Chen: Fuzzy System Methods in Modeling Gene Expression and Analyzing Protein Networks. Fuzzy Systems in Bioinformatics and Computational Biology 2009: 165-189 | |
| 43 | Rui-Sheng Wang, Guangxu Jin, Xiang-Sun Zhang, Luonan Chen: Modeling post-transcriptional regulation activity of small non-coding RNAs in Escherichia coli. BMC Bioinformatics 10(S-4): (2009) | |
| 42 | Yong Wang, Ling-Yun Wu, Ji-Hong Zhang, Zhong-Wei Zhan, Xiang-Sun Zhang, Luonan Chen: Evaluating Protein Similarity from Coarse Structures. IEEE/ACM Trans. Comput. Biology Bioinform. 6(4): 583-593 (2009) | |
| 41 | Xing-Ming Zhao, Rui-Sheng Wang, Luonan Chen, Kazuyuki Aihara: Automatic Modeling of Signaling Pathways by Network Flow Model. J. Bioinformatics and Computational Biology 7(2): 309-322 (2009) | |
| 40 | Ling-Yun Wu, Zhen-Ping Li, Rui-Sheng Wang, Xiang-Sun Zhang, Luonan Chen: Self-organizing map approaches for the haplotype assembly problem. Mathematics and Computers in Simulation 79(10): 3026-3037 (2009) | |
| 39 | Yi Wang, Jianwei Shen, Baoguo Niu, Zengrong Liu, Luonan Chen: Robustness of interval gene networks with multiple time-varying delays and noise. Neurocomputing 72(13-15): 3303-3310 (2009) | |
| 38 | Jiguang Wang, Shi-Hua Zhang, Yong Wang, Luonan Chen, Xiang-Sun Zhang: Disease-Aging Network Reveals Significant Roles of Aging Genes in Connecting Genetic Diseases. PLoS Computational Biology 5(9): (2009) | |
| 2008 | ||
| 37 | Xing-Ming Zhao, Rui-Sheng Wang, Luonan Chen, Kazuyuki Aihara: Automatic Modeling of Signal Pathways from Protein-Protein Interaction Networks. APBC 2008: 287-296 | |
| 36 | Rui-Sheng Wang, Guangxu Jin, Xiang-Sun Zhang, Luonan Chen: Reconstruction of Regulator Activity in E. coli Post-Transcription Processes. BIBM 2008: 339-342 | |
| 35 | Mingyu You, Guo-Zheng Li, Luonan Chen, Jianhua Tao: A Novel Classifier Based on Enhanced Lipschitz Embedding for Speech Emotion Recognition. ICIC (1) 2008: 482-490 | |
| 34 | Xing-Ming Zhao, Luonan Chen: Domain-Domain Interaction Identification with a Feature Selection Approach. PRIB 2008: 178-186 | |
| 33 | Xing-Ming Zhao, Yong Wang, Luonan Chen, Kazuyuki Aihara: Gene function prediction using labeled and unlabeled data. BMC Bioinformatics 9: (2008) | |
| 32 | Xing-Ming Zhao, Luonan Chen, Kazuyuki Aihara: Protein function prediction with the shortest path in functional linkage graph and boosting. IJBRA 4(4): 375-384 (2008) | |
| 31 | Zhi-Ping Liu, Ling-Yun Wu, Yong Wang, Xiang-Sun Zhang, Luonan Chen: Protein cavity clustering based on community structure of pocket similarity network. IJBRA 4(4): 445-460 (2008) | |
| 30 | Rui-Sheng Wang, Shi-Hua Zhang, Yong Wang, Xiang-Sun Zhang, Luonan Chen: Clustering complex networks and biological networks by nonnegative matrix factorization with various similarity measures. Neurocomputing 72(1-3): 134-141 (2008) | |
| 2007 | ||
| 29 | Huibo Lou, Chengxiong Mao, Jiming Lu, Dan Wang, Luonan Chen: Double Three-Level Inverter Based Variable Frequency Drive with Minimal Total Harmonic Distortion Using Particle Swarm Optimization. ICIC (1) 2007: 461-472 | |
| 28 | Rui-Sheng Wang, Shi-Hua Zhang, Xiang-Sun Zhang, Luonan Chen: Identifying Modules in Complex Networks by a Graph-Theoretical Method and Its Application in Protein Interaction Networks. ICIC (2) 2007: 1090-1101 | |
| 27 | Jianbao Zhang, Zengrong Liu, Ying Li, Luonan Chen: Frequency Synchronization of a Set of Cells Coupled by Quorum Sensing. LSMS (2) 2007: 21-27 | |
| 26 | Rui-Sheng Wang, Yong Wang, Xiang-Sun Zhang, Luonan Chen: Detecting Community Structure in Complex Networks by Optimal Rearrangement Clustering. PAKDD Workshops 2007: 119-130 | |
| 25 | Rui-Sheng Wang, Yong Wang, Ling-Yun Wu, Xiang-Sun Zhang, Luonan Chen: Analysis on multi-domain cooperation for predicting protein-protein interactions. BMC Bioinformatics 8: (2007) | |
| 24 | Zhi-Ping Liu, Ling-Yun Wu, Yong Wang, Luonan Chen, Xiang-Sun Zhang: Predicting gene ontology functions from protein's regional surface structures. BMC Bioinformatics 8: (2007) | |
| 23 | Zhen-Ping Li, Shi-Hua Zhang, Yong Wang, Xiang-Sun Zhang, Luonan Chen: Alignment of molecular networks by integer quadratic programming. Bioinformatics 23(13): 1631-1639 (2007) | |
| 22 | Rui-Sheng Wang, Yong Wang, Xiang-Sun Zhang, Luonan Chen: Inferring transcriptional regulatory networks from high-throughput data. Bioinformatics 23(22): 3056-3064 (2007) | |
| 21 | Yong Wang, Ling-Yun Wu, Luonan Chen, Xiang-Sun Zhang: Supervised classification of protein structures based on convex hull representation. IJBRA 3(2): 123-144 (2007) | |
| 2006 | ||
| 20 | Yong Wang, Trupti Joshi, Dong Xu, Xiang-Sun Zhang, Luonan Chen: Supervised Inference of Gene Regulatory Networks by Linear Programming. ICIC (3) 2006: 551-561 | |
| 19 | Shu Fan, Chengxiong Mao, Jiadong Zhang, Luonan Chen: Forecasting Electricity Demand by Hybrid Machine Learning Model. ICONIP (2) 2006: 952-963 | |
| 18 | Luonan Chen, Ruiqi Wang, Xiabo Zhou, S. Wong: Designing synthetic biological networks. ISCAS 2006 | |
| 17 | Yong Wang, Ling-Yun Wu, Xiang-Sun Zhang, Luonan Chen: Automatic Classification of Protein Structures Based on Convex Hull Representation by Integrated Neural Network. TAMC 2006: 505-514 | |
| 16 | Ruiqi Wang, Luonan Chen, Kazuyuki Aihara: Synchronizing a multicellular system by external input: an artificial control strategy. Bioinformatics 22(14): 1775-1781 (2006) | |
| 15 | Yong Wang, Trupti Joshi, Xiang-Sun Zhang, Dong Xu, Luonan Chen: Inferring gene regulatory networks from multiple microarray datasets. Bioinformatics 22(19): 2413-2420 (2006) | |
| 14 | Chunguang Li, Luonan Chen, Kazuyuki Aihara: Transient Resetting: A Novel Mechanism for Synchrony and Its Biological Examples. PLoS Computational Biology 2(8): (2006) | |
| 2005 | ||
| 13 | Luonan Chen, Ruiqi Wang, Kazuyuki Aihara: Reducing Gene Regulatory Networks by Decomposition. CSB Workshops 2005: 17-18 | |
| 12 | Luonan Chen, Ruiqi Wang, Zhujun Jing, Kazuyuki Aihara: Cooperative dynamics coordinated by stochastic noise in a multi-cell system. ISCAS (5) 2005: 4791-4794 | |
| 11 | Shu Fan, Chengxiong Mao, Luonan Chen: Peak Load Forecasting Using the Self-organizing Map. ISNN (3) 2005: 640-647 | |
| 10 | Luonan Chen, Tianshou Zhou, Yun Tang: Protein structure alignment by deterministic annealing. Bioinformatics 21(1): 51-62 (2005) | |
| 9 | Luonan Chen, Ruiqi Wang, Tianshou Zhou, Kazuyuki Aihara: Noise-induced cooperative behavior in a multicell system. Bioinformatics 21(11): 2722-2729 (2005) | |
| 8 | Zhen-Ping Li, Wenfeng Zhou, Xiang-Sun Zhang, Luonan Chen: A parsimonious tree-grow method for haplotype inference. Bioinformatics 21(17): 3475-3481 (2005) | |
| 7 | Xiang-Sun Zhang, Yong Wang, Zhong-Wei Zhan, Ling-Yun Wu, Luonan Chen: Exploring Protein's Optimal Hp Configurations by Self-organizing Mapping. J. Bioinformatics and Computational Biology 3(2): 385-400 (2005) | |
| 6 | Tianshou Zhou, Luonan Chen, Yun Tang, Xiang-Sun Zhang: Aligning Multiple Protein Structures by Deterministic Annealing. J. Bioinformatics and Computational Biology 3(4): 837-860 (2005) | |
| 2004 | ||
| 5 | Ruiqi Wang, Junya Nakai, Mitsuyasu Seo, Luonan Chen: Designing Synthetic Biological Systems by Multiple Time Scale Networks. CSB 2004: 748-749 | |
| 2003 | ||
| 4 | Luonan Chen: Multiple Protein Structure Alignment by Deterministic Annealing. CSB 2003: 609-610 | |
| 2002 | ||
| 3 | Tetsuya Kobayashi, Luonan Chen, Kazuyuki Aihara: Design of Genetic Switches with Only Positive Feedback Loops. CSB 2002: 151- | |
| 2 | Luonan Chen, Tetsuya Kobayashi, Kazuyuki Aihara: Designing Oscillators in Synthetic Gene Networks Based on Multi-Scale Dynamics. CSB 2002: 336 | |
| 1995 | ||
| 1 | Luonan Chen, Kazuyuki Aihara: Chaotic simulated annealing by a neural network model with transient chaos. Neural Networks 8(6): 915-930 (1995) | |
Colors in the list of coauthors
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