Rita Casadio

	2011
69		Monther Alhamdoosh, Castrense Savojardo, Piero Fariselli, Rita Casadio: Disulfide Connectivity Prediction with Extreme Learning Machines. BIOINFORMATICS 2011: 5-14
68		Pietro di Lena, Piero Fariselli, Luciano Margara, Marco Vassura, Rita Casadio: Divide and Conquer Strategies for Protein Structure Prediction. Mathematical Approaches to Polymer Sequence Analysis and Related Problems 2011: 23-46
67		Castrense Savojardo, Piero Fariselli, Monther Alhamdoosh, Pier Luigi Martelli, Andrea Pierleoni, Rita Casadio: Improving the prediction of disulfide bonds in Eukaryotes with machine learning methods and protein subcellular localization. Bioinformatics 27(16): 2224-2230 (2011)
66		Castrense Savojardo, Piero Fariselli, Rita Casadio: Improving the detection of transmembrane β-barrel chains with N-to-1 extreme learning machines. Bioinformatics 27(22): 3123-3128 (2011)
65		Andrea Pierleoni, Pier Luigi Martelli, Rita Casadio: MemLoci: predicting subcellular localization of membrane proteins in eukaryotes. Bioinformatics 27(9): 1224-1230 (2011)
64		Pietro di Lena, Piero Fariselli, Luciano Margara, Marco Vassura, Rita Casadio: Is There an Optimal Substitution Matrix for Contact Prediction with Correlated Mutations? IEEE/ACM Trans. Comput. Biology Bioinform. 8(4): 1017-1028 (2011)
63		Pier Luigi Martelli, Mattia D'Antonio, Paola Bonizzoni, Tiziana Castrignanò, Anna Maria D'Erchia, Paolo D'Onorio De Meo, Piero Fariselli, Michele Finelli, Flavio Licciulli, Marina Mangiulli, Flavio Mignone, Giulio Pavesi, Ernesto Picardi, Raffaella Rizzi, Ivan Rossi, Alessio Valletti, Andrea Zauli, Federico Zambelli, Rita Casadio, Graziano Pesole: ASPicDB: a database of annotated transcript and protein variants generated by alternative splicing. Nucleic Acids Research 39(Database-Issue): 80-85 (2011)
62		Damiano Piovesan, Pier Luigi Martelli, Piero Fariselli, Andrea Zauli, Ivan Rossi, Rita Casadio: BAR-PLUS: the Bologna Annotation Resource Plus for functional and structural annotation of protein sequences. Nucleic Acids Research 39(Web-Server-Issue): 197-202 (2011)
61		Andrea Pierleoni, Valentina Indio, Castrense Savojardo, Piero Fariselli, Pier Luigi Martelli, Rita Casadio: MemPype: a pipeline for the annotation of eukaryotic membrane proteins. Nucleic Acids Research 39(Web-Server-Issue): 375-380 (2011)
	2010
60		Castrense Savojardo, Piero Fariselli, Pier Luigi Martelli, Priyank Shukla, Rita Casadio: Prediction of the Bonding State of Cysteine Residues in Proteins with Machine-Learning Methods. CIBB 2010: 98-111
59		Pietro di Lena, Piero Fariselli, Luciano Margara, Marco Vassura, Rita Casadio: Fast overlapping of protein contact maps by alignment of eigenvectors. Bioinformatics 26(18): 2250-2258 (2010)
	2009
58		Piero Fariselli, Lisa Bartoli, Rita Casadio: Improving Coiled-Coil Prediction with Evolutionary Information. CIBB 2009: 20-32
57		Lisa Bartoli, Pier Luigi Martelli, Ivan Rossi, Piero Fariselli, Rita Casadio: Prediction of Protein-Protein Interacting Sites: How to Bridge Molecular Events to Large Scale Protein Interaction Networks. CMSB 2009: 1-17
56		Pietro di Lena, Piero Fariselli, Luciano Margara, Marco Vassura, Rita Casadio: On the Upper Bound of the Prediction Accuracy of Residue Contacts in Proteins with Correlated Mutations: The Case Study of the Similarity Matrices. WABI 2009: 62-72
55		Pietro di Lena, Marco Vassura, Luciano Margara, Piero Fariselli, Rita Casadio: On the Reconstruction of Three-dimensional Protein Structures from Contact Maps. Algorithms 2(1): 76-92 (2009)
54		Marco Vassura, Luciano Margara, Piero Fariselli, Rita Casadio: A graph theoretic approach to protein structure selection. Artificial Intelligence in Medicine 45(2-3): 229-237 (2009)
53		Lisa Bartoli, Piero Fariselli, Anders Krogh, Rita Casadio: CCHMM_PROF: a HMM-based coiled-coil predictor with evolutionary information. Bioinformatics 25(21): 2757-2763 (2009)
52		Iakes Ezkurdia, Lisa Bartoli, Piero Fariselli, Rita Casadio, Alfonso Valencia, Michael L. Tress: Progress and challenges in predicting protein-protein interaction sites. Briefings in Bioinformatics 10(3): 233-246 (2009)
	2008
51		Rita Casadio, Ovidiu Daescu, Cosmin Dini, Daniela Stan Raicu: International Conference on Biocomputation, Bioinformatics, and Biomedical Technologies, BIOTECHNO 2008, June 29 - July 5, 2008, Bucharest, Romania IEEE Computer Society 2008
50		Pietro di Lena, Luciano Margara, Marco Vassura, Piero Fariselli, Rita Casadio: A New Protein Representation Based on Fragment Contacts: Towards an Improvement of Contact Maps Predictions. CIBB 2008: 210-221
49		Ludovica Montanucci, Piero Fariselli, Pier Luigi Martelli, Rita Casadio: Predicting protein thermostability changes from sequence upon multiple mutations. ISMB 2008: 190-195
48		Emidio Capriotti, Piero Fariselli, Ivan Rossi, Rita Casadio: A three-state prediction of single point mutations on protein stability changes. BMC Bioinformatics 9(S-2): (2008)
47		Andrea Pierleoni, Pier Luigi Martelli, Rita Casadio: PredGPI: a GPI-anchor predictor. BMC Bioinformatics 9: (2008)
46		Marco Vassura, Luciano Margara, Pietro di Lena, Filippo Medri, Piero Fariselli, Rita Casadio: FT-COMAR: fault tolerant three-dimensional structure reconstruction from protein contact maps. Bioinformatics 24(10): 1313-1315 (2008)
45		Marco Vassura, Luciano Margara, Pietro di Lena, Filippo Medri, Piero Fariselli, Rita Casadio: Reconstruction of 3D Structures From Protein Contact Maps. IEEE/ACM Trans. Comput. Biology Bioinform. 5(3): 357-367 (2008)
	2007
44		Piero Fariselli, Daniele Molinini, Rita Casadio, Anders Krogh: Prediction of Structurally-Determined Coiled-Coil Domains with Hidden Markov Models. BIRD 2007: 292-302
43		Marco Vassura, Luciano Margara, Filippo Medri, Pietro di Lena, Piero Fariselli, Rita Casadio: Reconstruction of 3D Structures from Protein Contact Maps. ISBRA 2007: 578-589
42		Maria Mirto, Ivan Rossi, Italo Epicoco, Sandro Fiore, Piero Fariselli, Rita Casadio, Giovanni Aloisio: High Throughput Protein Similarity Searches in the LIBI Grid Problem Solving Environment. ISPA Workshops 2007: 414-423
41		Luciana Carota, Lisa Bartoli, Piero Fariselli, Pier Luigi Martelli, Ludovica Montanucci, Giorgio Maggi, Rita Casadio: High Throughput Comparison of Prokaryotic Genomes. PPAM 2007: 1200-1209
40		Marco Vassura, Luciano Margara, Pietro di Lena, Filippo Medri, Piero Fariselli, Rita Casadio: Fault Tolerance for Large Scale Protein 3D Reconstruction from Contact Maps. WABI 2007: 25-37
39		Marco Vassura, Luciano Margara, Piero Fariselli, Rita Casadio: A Graph Theoretic Approach to Protein Structure Selection. WILF 2007: 497-504
38		Lisa Bartoli, Remo Calabrese, Piero Fariselli, Damiano G. Mita, Rita Casadio: A computational approach for detecting peptidases and their specific inhibitors at the genome level. BMC Bioinformatics 8(S-1): (2007)
37		Rita Casadio, Manuela Helmer-Citterich, Graziano Pesole: Bioinformatics in Italy: BITS2006, the third annual meeting of the Italian Society of Bioinformatics. BMC Bioinformatics 8(S-1): (2007)
36		Emidio Capriotti, Rita Casadio: K-Fold: a tool for the prediction of the protein folding kinetic order and rate. Bioinformatics 23(3): 385-386 (2007)
35		Piero Fariselli, Ivan Rossi, Emidio Capriotti, Rita Casadio: The WWWH of remote homolog detection: The state of the art. Briefings in Bioinformatics 8(2): 78-87 (2007)
34		Rita Casadio: Guest Editor's Introduction to the Special Section on Computational Biology and Bioinformatics (WABI) - Part 2. IEEE/ACM Trans. Comput. Biology Bioinform. 4(1): 3 (2007)
33		Andrea Pierleoni, Pier Luigi Martelli, Piero Fariselli, Rita Casadio: eSLDB: eukaryotic subcellular localization database. Nucleic Acids Research 35(Database-Issue): 208-212 (2007)
	2006
32		Andrea Pierleoni, Pier Luigi Martelli, Piero Fariselli, Rita Casadio: BaCelLo: a balanced subcellular localization predictor. ISMB (Supplement of Bioinformatics) 2006: 415-416
31		Emidio Capriotti, Remo Calabrese, Rita Casadio: Predicting the insurgence of human genetic diseases associated to single point protein mutations with support vector machines and evolutionary information. Bioinformatics 22(22): 2729-2734 (2006)
30		Rita Casadio: Guest Editor's Introduction to the Special Issue on Computational Biology and Bioinformatics -- Part 1. IEEE/ACM Trans. Comput. Biology Bioinform. 3(4): 321-322 (2006)
29		Mauro Amico, Michele Finelli, Ivan Rossi, Andrea Zauli, Arne Elofsson, Håkan Viklund, Gunnar von Heijne, David Jones, Anders Krogh, Piero Fariselli, Pier Luigi Martelli, Rita Casadio: PONGO: a web server for multiple predictions of all-alpha transmembrane proteins. Nucleic Acids Research 34(Web-Server-Issue): 169-172 (2006)
	2005
28		Rita Casadio, Gene Myers: Algorithms in Bioinformatics, 5th International Workshop, WABI 2005, Mallorca, Spain, October 3-6, 2005, Proceedings Springer 2005
27		Emidio Capriotti, Piero Fariselli, Remo Calabrese, Rita Casadio: Predicting protein stability changes from sequences using support vector machines. ECCB/JBI 2005: 58
26		Piero Fariselli, Pier Luigi Martelli, Rita Casadio: A new decoding algorithm for hidden Markov models improves the prediction of the topology of all-beta membrane proteins. BMC Bioinformatics 6(S-4): (2005)
25		Manuela Helmer-Citterich, Rita Casadio, Alessandro Guffanti, Giancarlo Mauri, Luciano Milanesi, Graziano Pesole, Giorgio Valle, Cecilia Saccone: Overview of BITS2005, the Second Annual Meeting of the Italian Bioinformatics Society. BMC Bioinformatics 6(S-4): (2005)
24		Luciano Milanesi, Mauro Petrillo, Leandra Sepe, Angelo Boccia, Nunzio D'Agostino, Myriam Passamano, Salvatore Di Nardo, Gianluca Tasco, Rita Casadio, Giovanni Paolella: Systematic analysis of human kinase genes: a large number of genes and alternative splicing events result in functional and structural diversity. BMC Bioinformatics 6(S-4): (2005)
23		Piero Fariselli, Michele Finelli, Ivan Rossi, Mauro Amico, Andrea Zauli, Pier Luigi Martelli, Rita Casadio: TRAMPLE: the transmembrane protein labelling environment. Nucleic Acids Research 33(Web-Server-Issue): 198-201 (2005)
22		Emidio Capriotti, Piero Fariselli, Rita Casadio: I-Mutant2.0: predicting stability changes upon mutation from the protein sequence or structure. Nucleic Acids Research 33(Web-Server-Issue): 306-310 (2005)
	2004
21		Emidio Capriotti, Piero Fariselli, Rita Casadio: A neural-network-based method for predicting protein stability changes upon single point mutations. ISMB/ECCB (Supplement of Bioinformatics) 2004: 63-68
20		Carine Berezin, Fabian Glaser, Josef Rosenberg, Inbal Paz, Tal Pupko, Piero Fariselli, Rita Casadio, Nir Ben-Tal: ConSeq: the identification of functionally and structurally important residues in protein sequences. Bioinformatics 20(8): 1322-1324 (2004)
	2003
19		Pier Luigi Martelli, Piero Fariselli, Rita Casadio: An ENSEMBLE machine learning approach for the prediction of all-alpha membrane proteins. ISMB (Supplement of Bioinformatics) 2003: 205-211
18		Piero Fariselli, Giacomo Finocchiaro, Rita Casadio: Prediction of Signal Peptide in Proteins with Neural Networks. WIRN 2003: 237-244
17		Piero Fariselli, Giacomo Finocchiaro, Rita Casadio: SPEPlip: the detection of signal peptide and lipoprotein cleavage sites. Bioinformatics 19(18): 2498-2499 (2003)
16		Piero Fariselli, Michele Finelli, Davide Marchignoli, Pier Luigi Martelli, Ivan Rossi, Rita Casadio: MaxSubSeq: an algorithm for segment-length optimization. The case study of the transmembrane spanning segments. Bioinformatics 19(4): 500-505 (2003)
15		Rita Casadio, Piero Fariselli, Pier Luigi Martelli: In silico prediction of the structure of membrane proteins: Is it feasible? Briefings in Bioinformatics 4(4): 341-348 (2003)
	2002
14		Pier Luigi Martelli, Piero Fariselli, Anders Krogh, Rita Casadio: A sequence-profile-based HMM for predicting and discriminating beta barrel membrane proteins. ISMB 2002: 46-53
	2001
13		Gianluca Pollastri, Pierre Baldi, Piero Fariselli, Rita Casadio: Improved prediction of the number of residue contacts in proteins by recurrent neural networks. ISMB (Supplement of Bioinformatics) 2001: 234-242
12		Piero Fariselli, Rita Casadio: RCNPRED: prediction of the residue co-ordination numbers in proteins. Bioinformatics 17(1): 202-204 (2001)
11		Piero Fariselli, Rita Casadio: Prediction of disulfide connectivity in proteins. Bioinformatics 17(10): 957-964 (2001)
	2000
10		Piero Fariselli, Rita Casadio: Prediction of the Number of Residue Contacts in Proteins. ISMB 2000: 146-151
	1999
9		Rita Casadio, Mario Compiani, Piero Fariselli, Pier Luigi Martelli: A Data Base of Minimally Frustrated Alpha-Helical Segments Extracted from Proteins According to an Entropy Criterion. ISMB 1999: 68-76
	1997
8		Piero Fariselli, Rita Casadio: Pseudodihedral Potential of Protein Residues and the Prediction of Folding. BCEC 1997: 112-121
7		P. Arrigo, Piero Fariselli, Rita Casadio: Self-Organizing Neural Maps of the Coding Sequences of G-protein-coupled Receptors Reveal Local Domains Associated with Potentially Functional Determinants in the Proteins. ISMB 1997: 44-47
6		Francesco Vivarelli, Piero Fariselli, Rita Casadio: The Prediction of Protein Secondary Structure with a Cascade Correlation Learning Architecture of Neural Networks. Neural Computing and Applications 6(1): 57-62 (1997)
	1996
5		P. Arrigo, Piero Fariselli, Rita Casadio: The Identification of Locally Ordered Features an Completely unaligned Genomic Sequences by using an Unsupervised Neural Classifier. German Conference on Bioinformatics 1996: 156-158
4		Burkhard Rost, Rita Casadio, Piero Fariselli: Refining Neural Network Predictions for Helical Transmembrane Proteins by Dynamic Programming. ISMB 1996: 192-200
3		Piero Fariselli, Rita Casadio: HTP: a neural network-based method for predicting the topology of helical transmembrane domains in proteins. Computer Applications in the Biosciences 12(1): 41-48 (1996)
	1995
2		Rita Casadio, Mario Compiani, Piero Fariselli, Francesco Vivarelli: Predicting Free Energy Contribution to the Conformational Stability of Folded Proteins From the Residue Sequence with Radial Basis Function Networks. ISMB 1995: 81-88
1		Francesco Vivarelli, G. Giusti, M. Villani, Renato Campanini, Piero Fariselli, Mario Compiani, Rita Casadio: LGANN: a parallel system combining a local genetic algorithm and neural networks for the prediction of secondary structure of proteins. Computer Applications in the Biosciences 11(3): 253-260 (1995)

Coauthor Index

1	Monther Alhamdoosh	[67] [69]
2	Giovanni Aloisio	[42]
3	Mauro Amico	[23] [29]
4	P. Arrigo	[5] [7]
5	Pierre Baldi	[13]
6	Lisa Bartoli	[38] [41] [52] [53] [57] [58]
7	Nir Ben-Tal	[20]
8	Carine Berezin	[20]
9	Angelo Boccia	[24]
10	Paola Bonizzoni	[63]
11	Remo Calabrese	[27] [31] [38]
12	Renato Campanini	[1]
13	Emidio Capriotti	[21] [22] [27] [31] [35] [36] [48]
14	Luciana Carota	[41]
15	Tiziana Castrignanò	[63]
16	Mario Compiani	[1] [2] [9]
17	Nunzio D'Agostino	[24]
18	Mattia D'Antonio	[63]
19	Anna Maria D'Erchia	[63]
20	Ovidiu Daescu	[51]
21	Cosmin Dini	[51]
22	Arne Elofsson	[29]
23	Italo Epicoco	[42]
24	Iakes Ezkurdia	[52]
25	Piero Fariselli	[1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] [22] [23] [26] [27] [29] [32] [33] [35] [38] [39] [40] [41] [42] [43] [44] [45] [46] [48] [49] [50] [52] [53] [54] [55] [56] [57] [58] [59] [60] [61] [62] [63] [64] [66] [67] [68] [69]
26	Michele Finelli	[16] [23] [29] [63]
27	Giacomo Finocchiaro	[17] [18]
28	Sandro Fiore	[42]
29	G. Giusti	[1]
30	Fabian Glaser	[20]
31	Alessandro Guffanti	[25]
32	Gunnar von Heijne	[29]
33	Manuela Helmer-Citterich	[25] [37]
34	Valentina Indio	[61]
35	David Jones	[29]
36	Anders Krogh	[14] [29] [44] [53]
37	Pietro di Lena	[40] [43] [45] [46] [50] [55] [56] [59] [64] [68]
38	Flavio Licciulli	[63]
39	Giorgio Maggi	[41]
40	Marina Mangiulli	[63]
41	Davide Marchignoli	[16]
42	Luciano Margara	[39] [40] [43] [45] [46] [50] [54] [55] [56] [59] [64] [68]
43	Pier Luigi Martelli	[9] [14] [15] [16] [19] [23] [26] [29] [32] [33] [41] [47] [49] [57] [60] [61] [62] [63] [65] [67]
44	Giancarlo Mauri	[25]
45	Filippo Medri	[40] [43] [45] [46]
46	Paolo D'Onorio De Meo	[63]
47	Flavio Mignone	[63]
48	Luciano Milanesi	[24] [25]
49	Maria Mirto	[42]
50	Damiano G. Mita	[38]
51	Daniele Molinini	[44]
52	Ludovica Montanucci	[41] [49]
53	Eugene W. Myers (Gene Myers)	[28]
54	Salvatore Di Nardo	[24]
55	Giovanni Paolella	[24]
56	Myriam Passamano	[24]
57	Giulio Pavesi	[63]
58	Inbal Paz	[20]
59	Graziano Pesole	[25] [37] [63]
60	Mauro Petrillo	[24]
61	Ernesto Picardi	[63]
62	Andrea Pierleoni	[32] [33] [47] [61] [65] [67]
63	Damiano Piovesan	[62]
64	Gianluca Pollastri	[13]
65	Tal Pupko	[20]
66	Daniela Stan Raicu (Daniela Stan)	[51]
67	Raffaella Rizzi	[63]
68	Josef Rosenberg	[20]
69	Ivan Rossi	[16] [23] [29] [35] [42] [48] [57] [62] [63]
70	Burkhard Rost	[4]
71	Cecilia Saccone	[25]
72	Castrense Savojardo	[60] [61] [66] [67] [69]
73	Leandra Sepe	[24]
74	Priyank Shukla	[60]
75	Gianluca Tasco	[24]
76	Michael L. Tress	[52]
77	Alfonso Valencia	[52]
78	Giorgio Valle	[25]
79	Alessio Valletti	[63]
80	Marco Vassura	[39] [40] [43] [45] [46] [50] [54] [55] [56] [59] [64] [68]
81	Håkan Viklund	[29]
82	M. Villani	[1]
83	Francesco Vivarelli	[1] [2] [6]
84	Federico Zambelli	[63]
85	Andrea Zauli	[23] [29] [62] [63]

Colors in the list of coauthors

Last update Sun May 27 04:04:01 2012 CET by the DBLP Team — Data released under the ODC-BY 1.0 license — See also our legal information page