 | 2009 |
| 7 |  | Bongshin Lee,
Lev Nachmanson,
George G. Robertson,
Jonathan M. Carlson,
David Heckerman:
PhyloDet: a scalable visualization tool for mapping multiple traits to large evolutionary trees.
Bioinformatics 25(19): 2611-2612 (2009) |
| 2008 |
| 6 |  | Jonathan M. Carlson,
Zabrina L. Brumme,
Christine M. Rousseau,
Chanson J. Brumme,
Philippa Matthews,
Carl Myers Kadie,
James I. Mullins,
Bruce D. Walker,
P. Richard Harrigan,
Philip J. R. Goulder,
David Heckerman:
Phylogenetic Dependency Networks: Inferring Patterns of CTL Escape and Codon Covariation in HIV-1 Gag.
PLoS Computational Biology 4(11): (2008) |
| 2007 |
| 5 |  | Arijit Chakravarty,
Jonathan M. Carlson,
Radhika S. Khetani,
Robert H. Gross:
A novel ensemble learning method for de novo computational identification of DNA binding sites.
BMC Bioinformatics 8: (2007) |
| 4 |  | Arijit Chakravarty,
Jonathan M. Carlson,
Radhika S. Khetani,
Charles E. DeZiel,
Robert H. Gross:
SPACER: identification of cis-regulatory elements with non-contiguous critical residues.
Bioinformatics 23(8): 1029-1031 (2007) |
| 3 |  | Jonathan M. Carlson,
Arijit Chakravarty,
Charles E. DeZiel,
Robert H. Gross:
SCOPE: a web server for practical de novo motif discovery.
Nucleic Acids Research 35(Web-Server-Issue): 259-264 (2007) |
| 2006 |
| 2 |  | Jonathan M. Carlson,
Arijit Chakravarty,
Radhika S. Khetani,
Robert H. Gross:
Bounded search for de novo identification of degenerate cis-regulatory elements.
BMC Bioinformatics 7: 254 (2006) |
| 1 |  | Jonathan M. Carlson,
Arijit Chakravarty,
Robert H. Gross:
BEAM: A Beam Search Algorithm for the Identification of Cis-Regulatory Elements in Groups of Genes.
Journal of Computational Biology 13(3): 686-701 (2006) |