 | 2011 |
| 8 |  | Meg Pirrung,
Ryan Kennedy,
J. Gregory Caporaso,
Jesse Stombaugh,
Doug Wendel,
Rob Knight:
TopiaryExplorer: visualizing large phylogenetic trees with environmental metadata.
Bioinformatics 27(21): 3067-3069 (2011) |
| 7 |  | William A. Walters,
J. Gregory Caporaso,
Christian L. Lauber,
Donna Berg-Lyons,
Noah Fierer,
Rob Knight:
PrimerProspector: de novo design and taxonomic analysis of barcoded polymerase chain reaction primers.
Bioinformatics 27(8): 1159-1161 (2011) |
| 2010 |
| 6 |  | J. Gregory Caporaso,
Kyle Bittinger,
Frederic D. Bushman,
Todd Z. DeSantis,
Gary L. Andersen,
Rob Knight:
PyNAST: a flexible tool for aligning sequences to a template alignment.
Bioinformatics 26(2): 266-267 (2010) |
| 2008 |
| 5 |  | J. Gregory Caporaso,
Nita Deshpande,
J. Lynn Fink,
Philip E. Bourne,
K. Bretonnel Cohen,
Lawrence Hunter:
Intrinsic Evaluation of Text Mining Tools May Not Predict Performance on Realistic Tasks.
Pacific Symposium on Biocomputing 2008: 640-651 |
| 2007 |
| 4 |  | J. Gregory Caporaso,
William A. Baumgartner Jr.,
David A. Randolph,
K. Bretonnel Cohen,
Lawrence Hunter:
MutationFinder: a high-performance system for extracting point mutation mentions from text.
Bioinformatics 23(14): 1862-1865 (2007) |
| 3 |  | J. Gregory Caporaso,
William A. Baumgartner Jr.,
David A. Randolph,
K. Bretonnel Cohen,
Lawrence Hunter:
Rapid Pattern Development for Concept Recognition Systems: Application to Point mutations.
J. Bioinformatics and Computational Biology 5(6): 1233-1259 (2007) |
| 2006 |
| 2 |  | J. Gregory Caporaso,
William A. Baumgartner Jr.,
Hyunmin Kim,
Zhiyong Lu,
Helen L. Johnson,
Olga Medvedeva,
Anna Lindemann,
Lynne M. Fox,
Elizabeth K. White,
K. Bretonnel Cohen,
Lawrence Hunter:
Concept Recognition, Information Retrieval, and Machine Learning in Genomics Question-Answering.
TREC 2006 |
| 2005 |
| 1 |  | J. Gregory Caporaso,
William A. Baumgartner Jr.,
K. Bretonnel Cohen,
Helen L. Johnson,
Jesse Paquette,
Lawrence Hunter:
Concept Recognition and the TREC Genomics Tasks.
TREC 2005 |