 | 2012 |
| 20 |  | Ali Cakmak,
Xinjian Qi,
A. Ercument Cicek,
Ilya Bederman,
Leigh Henderson,
Mitchell Drumm,
Gultekin Özsoyoglu:
A New metabolomics Analysis Technique: steady-State metabolic Network Dynamics Analysis.
J. Bioinformatics and Computational Biology 10(1): (2012) |
| 2010 |
| 19 |  | Ali Cakmak,
Arun Dsouza,
Richard W. Hanson,
Z. Meral Özsoyoglu:
Analyzing metabolite measurements for automated prediction of underlying biological mechanisms.
BCB 2010: 137-146 |
| 18 |  | En Cheng,
Ali Cakmak,
Z. Meral Özsoyoglu:
Efficient query evaluation for DAG-shaped hierarchies.
BCB 2010: 454-456 |
| 17 |  | Brendan Elliott,
Stephen Mayes,
Ali Cakmak,
Gultekin Özsoyoglu,
Z. Meral Özsoyoglu:
Advanced querying interface for biochemical network databases.
SAC 2010: 1526-1533 |
| 16 |  | Ali Cakmak,
Gultekin Özsoyoglu,
Richard W. Hanson:
Querying metabolism under Different Physiological Constraints.
J. Bioinformatics and Computational Biology 8(2): 247-293 (2010) |
| 2009 |
| 15 |  | Ali Cakmak,
Mustafa Kirac,
Gultekin Özsoyoglu:
PopulusLog: People information database.
ISCIS 2009: 165-170 |
| 14 |  | Ali Cakmak,
Arun Dsouza,
Richard W. Hanson,
Gultekin Özsoyoglu,
Z. Meral Özsoyoglu:
A web-based data source for metabolomics.
ISCIS 2009: 454-459 |
| 13 |  | Brendan Elliott,
Mustafa Kirac,
Ali Cakmak,
Gökhan Yavas,
Stephen Mayes,
En Cheng,
Yuan Wang,
Chirag Gupta,
Gultekin Özsoyoglu,
Z. Meral Özsoyoglu:
Corrigendum for Elliott, B. et al., 'PathCase pathways database system', Bioinformatics 2008, 24(21) 2526-2533.
Bioinformatics 25(20): 2773 (2009) |
| 12 |  | Nattakarn Ratprasartporn,
Jonathan Po,
Ali Cakmak,
Sulieman Bani-Ahmad,
Gultekin Özsoyoglu:
Context-based literature digital collection search.
VLDB J. 18(1): 277-301 (2009) |
| 2008 |
| 11 |  | Ali Cakmak,
Gultekin Özsoyoglu:
Taxonomy-superimposed graph mining.
EDBT 2008: 217-228 |
| 10 |  | Ali Cakmak,
Gultekin Özsoyoglu:
Discovering gene annotations in biomedical text databases.
BMC Bioinformatics 9: (2008) |
| 9 |  | Brendan Elliott,
Mustafa Kirac,
Ali Cakmak,
Gökhan Yavas,
Stephen Mayes,
En Cheng,
Yuan Wang,
Chirag Gupta,
Gultekin Özsoyoglu,
Z. Meral Özsoyoglu:
PathCase: pathways database system.
Bioinformatics 24(21): 2526-2533 (2008) |
| 2007 |
| 8 |  | Nattakarn Ratprasartporn,
Sulieman Bani-Ahmad,
Ali Cakmak,
Jonathan Po,
Gultekin Özsoyoglu:
Evaluating Different Ranking Functions for Context-Based Literature Search.
ICDE Workshops 2007: 261-268 |
| 7 |  | Ali Cakmak,
Gultekin Özsoyoglu:
Annotating Genes Using Textual Patterns.
Pacific Symposium on Biocomputing 2007: 221-232 |
| 6 |  | Ali Cakmak,
Mustafa Kirac,
Marc R. Reynolds,
Z. Meral Özsoyoglu,
Gultekin Özsoyoglu:
Gene Ontology-Based Annotation Analysis and Categorization of Metabolic Pathways.
SSDBM 2007: 33 |
| 5 |  | Ali Cakmak,
Gultekin Özsoyoglu:
Mining biological networks for unknown pathways.
Bioinformatics 23(20): 2775-2783 (2007) |
| 2006 |
| 4 |  | Nattakarn Ratprasartporn,
Ali Cakmak,
Gultekin Özsoyoglu:
On Data and Visualization Models for Signaling Pathways.
SSDBM 2006: 133-142 |
| 3 |  | Mustafa Kirac,
Ali Cakmak,
Gultekin Özsoyoglu:
Task-Oriented Integrated Use of Biological Web Data Sources.
SSDBM 2006: 81-90 |
| 2005 |
| 2 |  | Sulieman Bani-Ahmad,
Ali Cakmak,
Abdullah Al-Hamdani,
Gultekin Özsoyoglu:
Evaluating Score and Publication Similarity Functions in Digital Libraries.
ICADL 2005: 483-485 |
| 1 |  | Sulieman Bani-Ahmad,
Ali Cakmak,
Gultekin Özsoyoglu,
Abdullah Al-Hamdani:
Evaluating Publication Similarity Measures.
IEEE Data Eng. Bull. 28(4): 21-28 (2005) |