Atul J. Butte

	2012
41		Alexander A. Morgan, Vasilios J. Pyrgos, Kari C. Nadeau, Peter R. Williamson, Atul J. Butte: Multiplex meta-analysis of RNA expression to identify genes with variants associated with immune dysfunction. JAMIA 19(2): 284-288 (2012)
40		Purvesh Khatri, Marina Sirota, Atul J. Butte: Ten Years of Pathway Analysis: Current Approaches and Outstanding Challenges. PLoS Computational Biology 8(2): (2012)
	2011
39		Rong Chen, Atul J. Butte: The Reference Human Genome Demonstrates High Risk of Type 1 Diabetes and Other Disorders. Pacific Symposium on Biocomputing 2011: 231-242
38		Joel Dudley, Rong Chen, Atul J. Butte: Matching Cancer Genomes to Established Cell Lines for Personalized Oncology. Pacific Symposium on Biocomputing 2011: 243-252
37		Jesse M. Engreitz, Rong Chen, Alexander A. Morgan, Joel Dudley, Rohan Mallelwar, Atul J. Butte: ProfileChaser: searching microarray repositories based on genome-wide patterns of differential expression. Bioinformatics 27(23): 3317-3318 (2011)
36		Joel Dudley, Tarangini Deshpande, Atul J. Butte: Exploiting drug-disease relationships for computational drug repositioning. Briefings in Bioinformatics 12(4): 303-311 (2011)
35		Atul J. Butte, Nigam H. Shah: Computationally translating molecular discoveries into tools for medicine: translational bioinformatics articles now featured in JAMIA. JAMIA 18(4): 352-353 (2011)
34		Indra Neil Sarkar, Atul J. Butte, Yves A. Lussier, Peter Tarczy-Hornoch, Lucila Ohno-Machado: Translational bioinformatics: linking knowledge across biological and clinical realms. JAMIA 18(4): 354-357 (2011)
	2010
33		Sanchita Bhattacharya, Shai Shen-Orr, Holden Maecker, Laura Lazzeroni, Gary E. Swan, J. David Clark, Martin S. Angst, Atul J. Butte, Mark M. Davis: Immunological response in normal healthy twins across age. BCB 2010: 657
32		Jesse M. Engreitz, Alexander A. Morgan, Joel Dudley, Rong Chen, Rahul Thathoo, Russ B. Altman, Atul J. Butte: Content-based microarray search using differential expression profiles. BMC Bioinformatics 11: 603 (2010)
31		Yves A. Lussier, Atul J. Butte, Lawrence Hunter: Current methodologies for translational bioinformatics. Journal of Biomedical Informatics 43(3): 355-357 (2010)
30		David P. Chen, Alexander A. Morgan, Atul J. Butte: Validating pathophysiological models of aging using clinical electronic medical records. Journal of Biomedical Informatics 43(3): 358-364 (2010)
29		Silpa Suthram, Joel Dudley, Annie P. Chiang, Rong Chen, Trevor Hastie, Atul J. Butte: Network-Based Elucidation of Human Disease Similarities Reveals Common Functional Modules Enriched for Pluripotent Drug Targets. PLoS Computational Biology 6(2): (2010)
28		Rong Chen, Tara K. Sigdel, Li Li, Neeraja Kambham, Joel Dudley, Szu-chuan Hsieh, R. Bryan Klassen, Amery Chen, Tuyen Caohuu, Alexander A. Morgan, Hannah A. Valantine, Kiran K. Khush, Minnie M. Sarwal, Atul J. Butte: Differentially Expressed RNA from Public Microarray Data Identifies Serum Protein Biomarkers for Cross-Organ Transplant Rejection and Other Conditions. PLoS Computational Biology 6(9): (2010)
	2009
27		Joel Dudley, Atul J. Butte: Identification of Discriminating Biomarkers for Human Disease Using Integrative Network Biology. Pacific Symposium on Biocomputing 2009: 27-38
26		Shai Shen-Orr, Ofir Goldberger, Yael Garten, Yael Rosenberg-Hasson, Patricia A. Lovelace, David Hirschberg, Russ B. Altman, Mark M. Davis, Atul J. Butte: Towards a Cytokine-Cell Interaction Knowledgebase of the Adaptive Immune System. Pacific Symposium on Biocomputing 2009: 439-450
25		Yves A. Lussier, Younghee Lee, Predrag Radivojac, Yanay Ofran, Atul J. Butte, Maricel G. Kann: Session Introduction. Pacific Symposium on Biocomputing 2009: 464-466
24		Nigam H. Shah, Clement Jonquet, Annie P. Chiang, Atul J. Butte, Rong Chen, Mark A. Musen: Ontology-driven indexing of public datasets for translational bioinformatics. BMC Bioinformatics 10(S-2): (2009)
23		Atul J. Butte, Indra Neil Sarkar, Marco Ramoni, Yves A. Lussier, Olga G. Troyanskaya: Selected proceedings of the First Summit on Translational Bioinformatics 2008. BMC Bioinformatics 10(S-2): (2009)
22		Yueyi I. Liu, Paul H. Wise, Atul J. Butte: The "etiome": identification and clustering of human disease etiological factors. BMC Bioinformatics 10(S-2): (2009)
21		Adam D. Grossman, Mitchell J. Cohen, Geoffrey T. Manley, Atul J. Butte: Infection in the intensive care unit alters physiological networks. BMC Bioinformatics 10(S-9): 4 (2009)
20		Marc A. Schaub, Irene M. Kaplow, Marina Sirota, Chuong B. Do, Atul J. Butte, Serafim Batzoglou: A Classifier-based approach to identify genetic similarities between diseases. Bioinformatics 25(12): (2009)
19		Sangeeta B. English, Shou-Ching Shih, Marco Ramoni, Lois E. Smith, Atul J. Butte: Use of Bayesian networks to probabilistically model and improve the likelihood of validation of microarray findings by RT-PCR. Journal of Biomedical Informatics 42(2): 287-295 (2009)
18		Joel Dudley, Atul J. Butte: A Quick Guide for Developing Effective Bioinformatics Programming Skills. PLoS Computational Biology 5(12): (2009)
	2008
17		Joel Dudley, David P. Chen, Atul J. Butte: Using SNOMED CT For Translational Genomics Data Integration. KR-MED 2008
16		Yves A. Lussier, Younghee Lee, Predrag Radivojac, Yanay Ofran, Marco Punta, Atul J. Butte, Maricel G. Kann: Session Introduction. Pacific Symposium on Biocomputing 2008: 228-230
15		David P. Chen, Susan C. Weber, Philip S. Constantinou, Todd A. Ferris, Henry J. Lowe, Atul J. Butte: Novel Integration of Hospital Electronic Medical Records and Gene Expression Measurements to Identify Genetic Markers of Maturation. Pacific Symposium on Biocomputing 2008: 243-254
14		Joel Dudley, Atul J. Butte: Enabling Integrative Genomic Analysis of High Impact Human Diseases Through Text Mining. Pacific Symposium on Biocomputing 2008: 580-591
13		Rong Chen, Rohan Mallelwar, Ajit Thosar, Shivkumar Venkatasubrahmanyam, Atul J. Butte: GeneChaser: Identifying all biological and clinical conditions in which genes of interest are differentially expressed. BMC Bioinformatics 9: (2008)
12		Atul J. Butte: Viewpoint Paper: Translational Bioinformatics: Coming of Age. JAMIA 15(6): 709-714 (2008)
	2007
11		Sangeeta B. English, Atul J. Butte: Evaluation and integration of 49 genome-wide experiments and the prediction of previously unknown obesity-related genes. Bioinformatics 23(21): 2910-2917 (2007)
	2005
10		Cecily J. Wolfe, Isaac S. Kohane, Atul J. Butte: Systematic survey reveals general applicability of "guilt-by-association" within gene coexpression networks. BMC Bioinformatics 6: 227 (2005)
	2004
9		Dominic J. Allocco, Isaac S. Kohane, Atul J. Butte: Quantifying the relationship between co-expression, co-regulation and gene function. BMC Bioinformatics 5: 18 (2004)
	2003
8		Ashish Nimgaonkar, Despina Sanoudou, Atul J. Butte, Judith N. Haslett, Louis M. Kunkel, Alan H. Beggs, Isaac S. Kohane: Reproducibility of gene expression across generations of Affymetrix microarrays. BMC Bioinformatics 4: 27 (2003)
7		Kyungjoon Lee, Isaac S. Kohane, Atul J. Butte: PGAGENE: integrating quantitative gene-specific results from the NHLBI Programs for Genomic Applications. Bioinformatics 19(6): 778-779 (2003)
	2002
6		Peter J. Park, Atul J. Butte, Isaac S. Kohane: Comparing expression profiles of genes with similar promoter regions. Bioinformatics 18(12): 1576-1584 (2002)
5		Winston Patrick Kuo, Tor-Kristian Jenssen, Atul J. Butte, Lucila Ohno-Machado, Isaac S. Kohane: Analysis of matched mRNA measurements from two different microarray technologies. Bioinformatics 18(3): 405-412 (2002)
	2001
4		Atul J. Butte, J. Ye, G. Niederfellner, K. Rett, H. U. Häring, M. F. White, Isaac S. Kohane: Determining Significant Fold Differences in Gene Expression Analysis. Pacific Symposium on Biocomputing 2001: 6-17
3		Ben Y. Reis, Atul J. Butte, Isaac S. Kohane: Extracting Knowledge from Dynamics in Gene Expression. Journal of Biomedical Informatics 34(1): 15-27 (2001)
2		Ben Y. Reis, Atul J. Butte, Isaac S. Kohane: Reply. Journal of Biomedical Informatics 34(4): 299-300 (2001)
1		Atul J. Butte, Ling Bao, Ben Y. Reis, Timothy W. Watkins, Isaac S. Kohane: Comparing the Similarity of Time-Series Gene Expression Using Signal Processing Metrics. Journal of Biomedical Informatics 34(6): 396-405 (2001)

Coauthor Index

1	Dominic J. Allocco	[9]
2	Russ B. Altman	[26] [32]
3	Martin S. Angst	[33]
4	Ling Bao	[1]
5	Serafim Batzoglou	[20]
6	Alan H. Beggs	[8]
7	Sanchita Bhattacharya	[33]
8	Tuyen Caohuu	[28]
9	Amery Chen	[28]
10	David P. Chen	[15] [17] [30]
11	Rong Chen	[13] [24] [28] [29] [32] [37] [38] [39]
12	Annie P. Chiang	[24] [29]
13	J. David Clark	[33]
14	Mitchell J. Cohen	[21]
15	Philip S. Constantinou	[15]
16	Mark M. Davis	[26] [33]
17	Tarangini Deshpande	[36]
18	Chuong B. Do	[20]
19	Joel Dudley	[14] [17] [18] [27] [28] [29] [32] [36] [37] [38]
20	Sangeeta B. English	[11] [19]
21	Jesse M. Engreitz	[32] [37]
22	Todd A. Ferris	[15]
23	Yael Garten	[26]
24	Ofir Goldberger	[26]
25	Adam D. Grossman	[21]
26	H. U. Häring	[4]
27	Judith N. Haslett	[8]
28	Trevor Hastie	[29]
29	David Hirschberg	[26]
30	Szu-chuan Hsieh	[28]
31	Lawrence Hunter	[31]
32	Tor-Kristian Jenssen	[5]
33	Clement Jonquet	[24]
34	Neeraja Kambham	[28]
35	Maricel G. Kann	[16] [25]
36	Irene M. Kaplow	[20]
37	Purvesh Khatri	[40]
38	Kiran K. Khush	[28]
39	R. Bryan Klassen	[28]
40	Isaac S. Kohane	[1] [2] [3] [4] [5] [6] [7] [8] [9] [10]
41	Louis M. Kunkel	[8]
42	Winston Patrick Kuo	[5]
43	Laura Lazzeroni	[33]
44	Kyungjoon Lee	[7]
45	Younghee Lee	[16] [25]
46	Li Li	[28]
47	Yueyi I. Liu	[22]
48	Patricia A. Lovelace	[26]
49	Henry J. Lowe	[15]
50	Yves A. Lussier	[16] [23] [25] [31] [34]
51	Holden Maecker	[33]
52	Rohan Mallelwar	[13] [37]
53	Geoffrey T. Manley	[21]
54	Alexander A. Morgan	[28] [30] [32] [37] [41]
55	Mark A. Musen	[24]
56	Kari C. Nadeau	[41]
57	G. Niederfellner	[4]
58	Ashish Nimgaonkar	[8]
59	Yanay Ofran	[16] [25]
60	Lucila Ohno-Machado	[5] [34]
61	Peter J. Park	[6]
62	Marco Punta	[16]
63	Vasilios J. Pyrgos	[41]
64	Predrag Radivojac	[16] [25]
65	Marco Ramoni	[19] [23]
66	Ben Y. Reis	[1] [2] [3]
67	K. Rett	[4]
68	Yael Rosenberg-Hasson	[26]
69	Despina Sanoudou	[8]
70	Indra Neil Sarkar	[23] [34]
71	Minnie M. Sarwal	[28]
72	Marc A. Schaub	[20]
73	Nigam H. Shah (Nigam Shah, N. H. Shah)	[24] [35]
74	Shai Shen-Orr	[26] [33]
75	Shou-Ching Shih	[19]
76	Tara K. Sigdel	[28]
77	Marina Sirota	[20] [40]
78	Lois E. Smith	[19]
79	Silpa Suthram	[29]
80	Gary E. Swan	[33]
81	Peter Tarczy-Hornoch	[34]
82	Rahul Thathoo	[32]
83	Ajit Thosar	[13]
84	Olga G. Troyanskaya	[23]
85	Hannah A. Valantine	[28]
86	Shivkumar Venkatasubrahmanyam	[13]
87	Timothy W. Watkins	[1]
88	Susan C. Weber	[15]
89	M. F. White	[4]
90	Peter R. Williamson	[41]
91	Paul H. Wise	[22]
92	Cecily J. Wolfe	[10]
93	J. Ye	[4]

Colors in the list of coauthors

Last update Sun May 27 04:04:01 2012 CET by the DBLP Team — Data released under the ODC-BY 1.0 license — See also our legal information page