Dongbo Bu

	2012
21		Shuai Cheng Li, Dongbo Bu, Ming Li: Residues with Similar Hexagon Neighborhoods Share Similar Side-Chain Conformations. IEEE/ACM Trans. Comput. Biology Bioinform. 9(1): 240-248 (2012)
20		Shuai Cheng Li, Dongbo Bu, Ming Li: Clustering 100, 000 Protein Structure Decoys in Minutes. IEEE/ACM Trans. Comput. Biology Bioinform. 9(3): 765-773 (2012)
	2011
19		Xingwu Liu, Yunfei Bai, Chunlin Huang, Xiaoyan Wang, Dongbo Bu: PEARL: Probing Entity Aggregation in Real Life. GreenCom 2011: 238-241
18		Yantao Qiao, Hong Zhang, Dongbo Bu, Shiwei Sun: PI: An open-source software package for validation of the SEQUEST result and visualization of mass spectrum. BMC Bioinformatics 12: 234 (2011)
17		Shenghui Zhang, Yaojun Wang, Dongbo Bu, Hong Zhang, Shiwei Sun: ProbPS: A new model for peak selection based on quantifying the dependence of the existence of derivative peaks on primary ion intensity. BMC Bioinformatics 12: 346 (2011)
16		Xiongying Yuan, Yi Zhao, Changning Liu, Dongbo Bu: Lex-SVM: Exploring the Potential of exon Expression Profiling for Disease Classification. J. Bioinformatics and Computational Biology 9(2): 299-316 (2011)
	2009
15		Dongbo Bu, Ming Li, Shuai Cheng Li, Jianbo Qian, Jinbo Xu: Finding compact structural motifs. Theor. Comput. Sci. 410(30-32): 2834-2839 (2009)
	2008
14		Shuai Cheng Li, Dongbo Bu, Jinbo Xu, Ming Li: Finding Largest Well-Predicted Subset of Protein Structure Models. CPM 2008: 44-55
13		Shuai Cheng Li, Dongbo Bu, Xin Gao, Jinbo Xu, Ming Li: Designing succinct structural alphabets. ISMB 2008: 182-189
12		Yu Lin, Yantao Qiao, Shiwei Sun, Chungong Yu, Gongjin Dong, Dongbo Bu: A Fragmentation Event Model for Peptide Identification by Mass Spectrometry. RECOMB 2008: 154-166
11		Xiang Chen, Simin He, Dongbo Bu, Fa Zhang, Zhiyong Wang, Runsheng Chen, Wen Gao: FlexStem: improving predictions of RNA secondary structures with pseudoknots by reducing the search space. Bioinformatics 24(18): 1994-2001 (2008)
	2007
10		Xiang Chen, Simin He, Dongbo Bu, Runsheng Chen, Wen Gao: A Flexible Stem-Based Local Search Algorithm for Predicting RNA Secondary Structures Including Pseudoknots. BIBE 2007: 411-417
9		Jianbo Qian, Shuai Cheng Li, Dongbo Bu, Ming Li, Jinbo Xu: Finding Compact Structural Motifs. CPM 2007: 142-149
8		Chungong Yu, Yu Lin, Shiwei Sun, Jinjin Cai, Jingfen Zhang, Dongbo Bu, Zhuo Zhang, Runsheng Chen: An Iterative Algorithm to Quantify Factors Influencing peptide Fragmentation during Tandem Mass Spectrometry. J. Bioinformatics and Computational Biology 5(2a): 297-311 (2007)
	2006
7		Guangming Tan, Ninghui Sun, Dongbo Bu: Improving locality of nonserial polyadic dynamic programming. IPDPS 2006
6		Zhuo Zhang, Shiwei Sun, Xiaopeng Zhu, Suhua Chang, Xiaofei Liu, Chungong Yu, Dongbo Bu, Runsheng Chen: A novel scoring schema for peptide identification by searching protein sequence databases using tandem mass spectrometry data. BMC Bioinformatics 7: 222 (2006)
5		Guangming Tan, Lin Xu, Dongbo Bu, Shengzhong Feng, Ninghui Sun: Improvement of Performance of MegaBlast Algorithm for DNA Sequence Alignment. J. Comput. Sci. Technol. 21(6): 973-978 (2006)
	2005
4		Guangming Tan, Lin Xu, Yishan Jiao, Shengzhong Feng, Dongbo Bu, Ninghui Sun: An Optimized Algorithm of High Spatial-temporal Efficiency for MegaBlast. ICPADS (2) 2005: 704-708
3		Changning Liu, Baoyan Bai, Geir Skogerbø, Lun Cai, Wei Deng, Yong Zhang, Dongbo Bu, Yi Zhao, Runsheng Chen: NONCODE: an integrated knowledge database of non-coding RNAs. Nucleic Acids Research 33(Database-Issue): 112-115 (2005)
	2004
2		Hao Lin, Zefeng Zhang, Qiang-Feng Zhang, Dongbo Bu, Ming Li: A Note on the Single Genotype Resolution Problem. J. Comput. Sci. Technol. 19(2): 254-257 (2004)
	2001
1		Bin Wang, Hongbo Xu, Zhifeng Yang, Yue Liu, Xueqi Cheng, Dongbo Bu, Shuo Bai: TREC-10 Experiments at CAS-ICT: Filtering, Web and QA. TREC 2001

Coauthor Index

1	Baoyan Bai	[3]
2	Shuo Bai	[1]
3	Yunfei Bai	[19]
4	Jinjin Cai	[8]
5	Lun Cai	[3]
6	Suhua Chang	[6]
7	Runsheng Chen	[3] [6] [8] [10] [11]
8	Xiang Chen	[10] [11]
9	Xueqi Cheng	[1]
10	Wei Deng	[3]
11	Gongjin Dong	[12]
12	Shengzhong Feng	[4] [5]
13	Wen Gao	[10] [11]
14	Xin Gao	[13]
15	Simin He	[10] [11]
16	Chunlin Huang	[19]
17	Yishan Jiao	[4]
18	Ming Li	[2] [9] [13] [14] [15] [20] [21]
19	Shuai Cheng Li	[9] [13] [14] [15] [20] [21]
20	Hao Lin	[2]
21	Yu Lin	[8] [12]
22	Changning Liu	[3] [16]
23	Xiaofei Liu	[6]
24	Xingwu Liu	[19]
25	Yue Liu	[1]
26	Jianbo Qian	[9] [15]
27	Yantao Qiao	[12] [18]
28	Geir Skogerbø	[3]
29	Ninghui Sun	[4] [5] [7]
30	Shiwei Sun	[6] [8] [12] [17] [18]
31	Guangming Tan	[4] [5] [7]
32	Bin Wang	[1]
33	Xiaoyan Wang	[19]
34	Yaojun Wang	[17]
35	Zhiyong Wang	[11]
36	Hongbo Xu	[1]
37	Jinbo Xu	[9] [13] [14] [15]
38	Lin Xu	[4] [5]
39	Zhifeng Yang	[1]
40	Chungong Yu	[6] [8] [12]
41	Xiongying Yuan	[16]
42	Fa Zhang	[11]
43	Hong Zhang	[17] [18]
44	Jingfen Zhang	[8]
45	Qiang-Feng Zhang	[2]
46	Shenghui Zhang	[17]
47	Yong Zhang	[3]
48	Zefeng Zhang	[2]
49	Zhuo Zhang	[6] [8]
50	Yi Zhao	[3] [16]
51	Xiaopeng Zhu	[6]

Colors in the list of coauthors

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