 | 2012 |
|---|
| 39 |       | Eric W. Sayers,
Tanya Barrett,
Dennis A. Benson,
Evan Bolton,
Stephen H. Bryant,
Kathi Canese,
Vyacheslav Chetvernin,
Deanna M. Church,
Michael DiCuccio,
Scott Federhen,
Michael Feolo,
Ian M. Fingerman,
Lewis Y. Geer,
Wolfgang Helmberg,
Yuri Kapustin,
Sergey Krasnov,
David Landsman,
David J. Lipman,
Zhiyong Lu,
Thomas L. Madden,
Tom Madej,
Donna R. Maglott,
Aron Marchler-Bauer,
Vadim Miller,
Ilene Karsch-Mizrachi,
James Ostell,
Anna R. Panchenko,
Lon Phan,
Kim D. Pruitt,
Gregory D. Schuler,
Edwin Sequeira,
Stephen T. Sherry,
Martin Shumway,
Karl Sirotkin,
Douglas J. Slotta,
Alexandre Souvorov,
Grigory Starchenko,
Tatiana A. Tatusova,
Lukas Wagner,
Yanli Wang,
W. John Wilbur,
Eugene Yaschenko,
Jian Ye:
Database resources of the National Center for Biotechnology Information.
Nucleic Acids Research 40(Database-Issue): 13-25 (2012) |
| 38 | | Yanli Wang,
Jewen Xiao,
Tugba O. Suzek,
Jian Zhang,
Jiyao Wang,
Zhigang Zhou,
Lianyi Han,
Karen Karapetyan,
Svetlana Dracheva,
Benjamin A. Shoemaker,
Evan Bolton,
Asta Gindulyte,
Stephen H. Bryant:
PubChem's BioAssay Database.
Nucleic Acids Research 40(Database-Issue): 400-412 (2012) |
| 37 | | Thomas Madej,
Kenneth J. Addess,
Jessica H. Fong,
Lewis Y. Geer,
Renata C. Geer,
Christopher J. Lanczycki,
Chunlei Liu,
Shennan Lu,
Aron Marchler-Bauer,
Anna R. Panchenko,
Jie Chen,
Paul A. Thiessen,
Yanli Wang,
Dachuan Zhang,
Stephen H. Bryant:
MMDB: 3D structures and macromolecular interactions.
Nucleic Acids Research 40(Database-Issue): 461-464 (2012) |
| 36 | | Benjamin A. Shoemaker,
Dachuan Zhang,
Manoj Tyagi,
Ratna R. Thangudu,
Jessica H. Fong,
Aron Marchler-Bauer,
Stephen H. Bryant,
Thomas Madej,
Anna R. Panchenko:
IBIS (Inferred Biomolecular Interaction Server) reports, predicts and integrates multiple types of conserved interactions for proteins.
Nucleic Acids Research 40(Database-Issue): 834-840 (2012) |
| 2011 |
|---|
| 35 | | Aron Marchler-Bauer,
Shennan Lu,
John B. Anderson,
Farideh Chitsaz,
Myra K. Derbyshire,
Carol DeWeese-Scott,
Jessica H. Fong,
Lewis Y. Geer,
Renata C. Geer,
Noreen R. Gonzales,
Marc Gwadz,
David I. Hurwitz,
John D. Jackson,
Zhaoxi Ke,
Christopher J. Lanczycki,
Fu Lu,
Gabriele H. Marchler,
Mikhail Mullokandov,
Marina V. Omelchenko,
Cynthia L. Robertson,
James S. Song,
Narmada Thanki,
Roxanne A. Yamashita,
Dachuan Zhang,
Naigong Zhang,
Chanjuan Zheng,
Stephen H. Bryant:
CDD: a Conserved Domain Database for the functional annotation of proteins.
Nucleic Acids Research 39(Database-Issue): 225-229 (2011) |
| 34 | | Eric W. Sayers,
Tanya Barrett,
Dennis A. Benson,
Evan Bolton,
Stephen H. Bryant,
Kathi Canese,
Vyacheslav Chetvernin,
Deanna M. Church,
Michael DiCuccio,
Scott Federhen,
Michael Feolo,
Ian M. Fingerman,
Lewis Y. Geer,
Wolfgang Helmberg,
Yuri Kapustin,
David Landsman,
David J. Lipman,
Zhiyong Lu,
Thomas L. Madden,
Tom Madej,
Donna R. Maglott,
Aron Marchler-Bauer,
Vadim Miller,
Ilene Mizrachi,
James Ostell,
Anna R. Panchenko,
Lon Phan,
Kim D. Pruitt,
Gregory D. Schuler,
Edwin Sequeira,
Stephen T. Sherry,
Martin Shumway,
Karl Sirotkin,
Douglas J. Slotta,
Alexandre Souvorov,
Grigory Starchenko,
Tatiana A. Tatusova,
Lukas Wagner,
Yanli Wang,
W. John Wilbur,
Eugene Yaschenko,
Jian Ye:
Database resources of the National Center for Biotechnology Information.
Nucleic Acids Research 39(Database-Issue): 38-51 (2011) |
| 2010 |
|---|
| 33 | | Saikat Chakrabarti,
Christopher J. Lanczycki,
Anna R. Panchenko,
Teresa M. Przytycka,
Paul A. Thiessen,
Stephen H. Bryant:
State of the art: refinement of multiple sequence alignments.
BMC Bioinformatics 11: 3 (2010) |
| 32 | | Ratna R. Thangudu,
Manoj Tyagi,
Benjamin A. Shoemaker,
Stephen H. Bryant,
Anna R. Panchenko,
Thomas Madej:
Knowledge-based annotation of small molecule binding sites in proteins.
BMC Bioinformatics 11: 365 (2010) |
| 31 | | Tiejun Cheng,
Yanli Wang,
Stephen H. Bryant:
Investigating the correlations among the chemical structures, bioactivity profiles and molecular targets of small molecules.
Bioinformatics 26(22): 2881-2888 (2010) |
| 30 | | Yanli Wang,
Evan Bolton,
Svetlana Dracheva,
Karen Karapetyan,
Benjamin A. Shoemaker,
Tugba O. Suzek,
Jiyao Wang,
Jewen Xiao,
Jian Zhang,
Stephen H. Bryant:
An overview of the PubChem BioAssay resource.
Nucleic Acids Research 38(Database-Issue): 255-266 (2010) |
| 29 | | Lewis Y. Geer,
Aron Marchler-Bauer,
Renata C. Geer,
Lianyi Han,
Jane He,
Siqian He,
Chunlei Liu,
Wenyao Shi,
Stephen H. Bryant:
The NCBI BioSystems database.
Nucleic Acids Research 38(Database-Issue): 492-496 (2010) |
| 28 | | Eric W. Sayers,
Tanya Barrett,
Dennis A. Benson,
Evan Bolton,
Stephen H. Bryant,
Kathi Canese,
Vyacheslav Chetvernin,
Deanna M. Church,
Michael DiCuccio,
Scott Federhen,
Michael Feolo,
Lewis Y. Geer,
Wolfgang Helmberg,
Yuri Kapustin,
David Landsman,
David J. Lipman,
Zhiyong Lu,
Thomas L. Madden,
Tom Madej,
Donna R. Maglott,
Aron Marchler-Bauer,
Vadim Miller,
Ilene Mizrachi,
James Ostell,
Anna R. Panchenko,
Kim D. Pruitt,
Gregory D. Schuler,
Edwin Sequeira,
Stephen T. Sherry,
Martin Shumway,
Karl Sirotkin,
Douglas J. Slotta,
Alexandre Souvorov,
Grigory Starchenko,
Tatiana A. Tatusova,
Lukas Wagner,
Yanli Wang,
W. John Wilbur,
Eugene Yaschenko,
Jian Ye:
Database resources of the National Center for Biotechnology Information.
Nucleic Acids Research 38(Database-Issue): 5-16 (2010) |
| 27 | | Benjamin A. Shoemaker,
Dachuan Zhang,
Ratna R. Thangudu,
Manoj Tyagi,
Jessica H. Fong,
Aron Marchler-Bauer,
Stephen H. Bryant,
Tom Madej,
Anna R. Panchenko:
Inferred Biomolecular Interaction Server - a web server to analyze and predict protein interacting partners and binding sites.
Nucleic Acids Research 38(Database-Issue): 518-524 (2010) |
| 2009 |
|---|
| 26 |  | Yanli Wang,
Stephen H. Bryant:
PubChem: The NIH Public Repository for Small Molecules and Biological Screening Results.
BIOCOMP 2009: 726-728 |
| 25 | | Lianyi Han,
Yanli Wang,
Stephen H. Bryant:
A survey of across-target bioactivity results of small molecules in PubChem.
Bioinformatics 25(17): 2251-2255 (2009) |
| 24 | | Qingliang Li,
Yanli Wang,
Stephen H. Bryant:
A novel method for mining highly imbalanced high-throughput screening data in PubChem.
Bioinformatics 25(24): 3310-3316 (2009) |
| 23 | | Zhigang Zhou,
Yanli Wang,
Stephen H. Bryant:
Computational analysis of the cathepsin B inhibitors activities through LR-MMPBSA binding affinity calculation based on docked complex.
Journal of Computational Chemistry 30(14): 2165-2175 (2009) |
| 22 | | Aron Marchler-Bauer,
John B. Anderson,
Farideh Chitsaz,
Myra K. Derbyshire,
Carol DeWeese-Scott,
Jessica H. Fong,
Lewis Y. Geer,
Renata C. Geer,
Noreen R. Gonzales,
Marc Gwadz,
Siqian He,
David I. Hurwitz,
John D. Jackson,
Zhaoxi Ke,
Christopher J. Lanczycki,
Cynthia A. Liebert,
Chunlei Liu,
Fu Lu,
Shennan Lu,
Gabriele H. Marchler,
Mikhail Mullokandov,
James S. Song,
Asba Tasneem,
Narmada Thanki,
Roxanne A. Yamashita,
Dachuan Zhang,
Naigong Zhang,
Stephen H. Bryant:
CDD: specific functional annotation with the Conserved Domain Database.
Nucleic Acids Research 37(Database-Issue): 205-210 (2009) |
| 21 | | Eric W. Sayers,
Tanya Barrett,
Dennis A. Benson,
Stephen H. Bryant,
Kathi Canese,
Vyacheslav Chetvernin,
Deanna M. Church,
Michael DiCuccio,
Ron Edgar,
Scott Federhen,
Michael Feolo,
Lewis Y. Geer,
Wolfgang Helmberg,
Yuri Kapustin,
David Landsman,
David J. Lipman,
Thomas L. Madden,
Donna R. Maglott,
Vadim Miller,
Ilene Karsch-Mizrachi,
James Ostell,
Kim D. Pruitt,
Gregory D. Schuler,
Edwin Sequeira,
Stephen T. Sherry,
Martin Shumway,
Karl Sirotkin,
Alexandre Souvorov,
Grigory Starchenko,
Tatiana A. Tatusova,
Lukas Wagner,
Eugene Yaschenko,
Jian Ye:
Database resources of the National Center for Biotechnology Information.
Nucleic Acids Research 37(Database-Issue): 5-15 (2009) |
| 20 | | Yanli Wang,
Jewen Xiao,
Tugba O. Suzek,
Jian Zhang,
Jiyao Wang,
Stephen H. Bryant:
PubChem: a public information system for analyzing bioactivities of small molecules.
Nucleic Acids Research 37(Web-Server-Issue): 623-633 (2009) |
| 2008 |
|---|
| 19 | | Lianyi Han,
Yanli Wang,
Stephen H. Bryant:
Developing and validating predictive decision tree models from mining chemical structural fingerprints and high-throughput screening data in PubChem.
BMC Bioinformatics 9: (2008) |
| 18 | | David L. Wheeler,
Tanya Barrett,
Dennis A. Benson,
Stephen H. Bryant,
Kathi Canese,
Vyacheslav Chetvernin,
Deanna M. Church,
Michael DiCuccio,
Ron Edgar,
Scott Federhen,
Michael Feolo,
Lewis Y. Geer,
Wolfgang Helmberg,
Yuri Kapustin,
Oleg Khovayko,
David Landsman,
David J. Lipman,
Thomas L. Madden,
Donna R. Maglott,
Vadim Miller,
James Ostell,
Kim D. Pruitt,
Gregory D. Schuler,
Martin Shumway,
Edwin Sequeira,
Steven T. Sherry,
Karl Sirotkin,
Alexandre Souvorov,
Grigory Starchenko,
Roman L. Tatusov,
Tatiana A. Tatusova,
Lukas Wagner,
Eugene Yaschenko:
Database resources of the National Center for Biotechnology Information.
Nucleic Acids Research 36(Database-Issue): 13-21 (2008) |
| 2007 |
|---|
| 17 | | Aron Marchler-Bauer,
John B. Anderson,
Myra K. Derbyshire,
Carol DeWeese-Scott,
Noreen R. Gonzales,
Marc Gwadz,
Luning Hao,
Siqian He,
David I. Hurwitz,
John D. Jackson,
Zhaoxi Ke,
Dmitri M. Krylov,
Christopher J. Lanczycki,
Cynthia A. Liebert,
Chunlei Liu,
Fu Lu,
Shennan Lu,
Gabriele H. Marchler,
Mikhail Mullokandov,
James S. Song,
Narmada Thanki,
Roxanne A. Yamashita,
Jodie J. Yin,
Dachuan Zhang,
Stephen H. Bryant:
CDD: a conserved domain database for interactive domain family analysis.
Nucleic Acids Research 35(Database-Issue): 237-240 (2007) |
| 16 | | Yanli Wang,
Kenneth J. Addess,
Jie Chen,
Lewis Y. Geer,
Jane He,
Siqian He,
Shennan Lu,
Thomas Madej,
Aron Marchler-Bauer,
Paul A. Thiessen,
Naigong Zhang,
Stephen H. Bryant:
MMDB: annotating protein sequences with Entrez's 3D-structure database.
Nucleic Acids Research 35(Database-Issue): 298-300 (2007) |
| 15 | | David L. Wheeler,
Tanya Barrett,
Dennis A. Benson,
Stephen H. Bryant,
Kathi Canese,
Vyacheslav Chetvernin,
Deanna M. Church,
Michael DiCuccio,
Ron Edgar,
Scott Federhen,
Lewis Y. Geer,
Yuri Kapustin,
Oleg Khovayko,
David Landsman,
David J. Lipman,
Thomas L. Madden,
Donna R. Maglott,
James Ostell,
Vadim Miller,
Kim D. Pruitt,
Gregory D. Schuler,
Edwin Sequeira,
Steven T. Sherry,
Karl Sirotkin,
Alexandre Souvorov,
Grigory Starchenko,
Roman L. Tatusov,
Tatiana A. Tatusova,
Lukas Wagner,
Eugene Yaschenko:
Database resources of the National Center for Biotechnology Information.
Nucleic Acids Research 35(Database-Issue): 5-12 (2007) |
| 2006 |
|---|
| 14 | | Saikat Chakrabarti,
Christopher J. Lanczycki,
Anna R. Panchenko,
Teresa M. Przytycka,
Paul A. Thiessen,
Stephen H. Bryant:
State of the art: refinement of multiple sequence alignments.
BMC Bioinformatics 7: 499 (2006) |
| 13 | | David L. Wheeler,
Tanya Barrett,
Dennis A. Benson,
Stephen H. Bryant,
Kathi Canese,
Vyacheslav Chetvernin,
Deanna M. Church,
Michael DiCuccio,
Ron Edgar,
Scott Federhen,
Lewis Y. Geer,
Wolfgang Helmberg,
Yuri Kapustin,
David L. Kenton,
Oleg Khovayko,
David J. Lipman,
Thomas L. Madden,
Donna R. Maglott,
James Ostell,
Kim D. Pruitt,
Gregory D. Schuler,
Lynn M. Schriml,
Edwin Sequeira,
Stephen T. Sherry,
Karl Sirotkin,
Alexandre Souvorov,
Grigory Starchenko,
Tugba O. Suzek,
Roman L. Tatusov,
Tatiana A. Tatusova,
Lukas Wagner,
Eugene Yaschenko:
Database resources of the National Center for Biotechnology Information.
Nucleic Acids Research 34(Database-Issue): 173-180 (2006) |
| 2005 |
|---|
| 12 | | Maricel G. Kann,
Paul A. Thiessen,
Anna R. Panchenko,
Alejandro A. Schäffer,
Stephen F. Altschul,
Stephen H. Bryant:
A structure-based method for protein sequence alignment.
Bioinformatics 21(8): 1451-1456 (2005) |
| 11 | | Aron Marchler-Bauer,
John B. Anderson,
Praveen F. Cherukuri,
Carol DeWeese-Scott,
Lewis Y. Geer,
Marc Gwadz,
Siqian He,
David I. Hurwitz,
John D. Jackson,
Zhaoxi Ke,
Christopher J. Lanczycki,
Cynthia A. Liebert,
Chunlei Liu,
Fu Lu,
Gabriele H. Marchler,
Mikhail Mullokandov,
Benjamin A. Shoemaker,
Vahan Simonyan,
James S. Song,
Paul A. Thiessen,
Roxanne A. Yamashita,
Jodie J. Yin,
Dachuan Zhang,
Stephen H. Bryant:
CDD: a Conserved Domain Database for protein classification.
Nucleic Acids Research 33(Database-Issue): 192-196 (2005) |
| 10 | | David L. Wheeler,
Tanya Barrett,
Dennis A. Benson,
Stephen H. Bryant,
Kathi Canese,
Deanna M. Church,
Michael DiCuccio,
Ron Edgar,
Scott Federhen,
Wolfgang Helmberg,
David L. Kenton,
Oleg Khovayko,
David J. Lipman,
Thomas L. Madden,
Donna R. Maglott,
James Ostell,
Joan U. Pontius,
Kim D. Pruitt,
Gregory D. Schuler,
Lynn M. Schriml,
Edwin Sequeira,
Steven T. Sherry,
Karl Sirotkin,
Grigory Starchenko,
Tugba O. Suzek,
Roman L. Tatusov,
Tatiana A. Tatusova,
Lukas Wagner,
Eugene Yaschenko:
Database resources of the National Center for Biotechnology Information.
Nucleic Acids Research 33(Database-Issue): 39-45 (2005) |
| 2004 |
|---|
| 9 | | Aron Marchler-Bauer,
Stephen H. Bryant:
CD-Search: protein domain annotations on the fly.
Nucleic Acids Research 32(Web-Server-Issue): 327-331 (2004) |
| 2003 |
|---|
| 8 | | Aron Marchler-Bauer,
John B. Anderson,
Carol DeWeese-Scott,
Natalie D. Fedorova,
Lewis Y. Geer,
Siqian He,
David I. Hurwitz,
John D. Jackson,
Aviva R. Jacobs,
Christopher J. Lanczycki,
Cynthia A. Liebert,
Chunlei Liu,
Thomas Madej,
Gabriele H. Marchler,
Raja Mazumder,
Anastasia N. Nikolskaya,
Anna R. Panchenko,
Bachoti S. Rao,
Benjamin A. Shoemaker,
Vahan Simonyan,
James S. Song,
Paul A. Thiessen,
Sona Vasudevan,
Yanli Wang,
Roxanne A. Yamashita,
Jodie J. Yin,
Stephen H. Bryant:
CDD: a curated Entrez database of conserved domain alignments.
Nucleic Acids Research 31(1): 383-387 (2003) |
| 7 | | Jie Chen,
John B. Anderson,
Carol DeWeese-Scott,
Natalie D. Fedorova,
Lewis Y. Geer,
Siqian He,
David I. Hurwitz,
John D. Jackson,
Aviva R. Jacobs,
Christopher J. Lanczycki,
Cynthia A. Liebert,
Chunlei Liu,
Thomas Madej,
Aron Marchler-Bauer,
Gabriele H. Marchler,
Raja Mazumder,
Anastasia N. Nikolskaya,
Bachoti S. Rao,
Anna R. Panchenko,
Benjamin A. Shoemaker,
Vahan Simonyan,
James S. Song,
Paul A. Thiessen,
Sona Vasudevan,
Yanli Wang,
Roxanne A. Yamashita,
Jodie J. Yin,
Stephen H. Bryant:
MMDB: Entrez's 3D-structure database.
Nucleic Acids Research 31(1): 474-477 (2003) |
| 2002 |
|---|
| 6 | | Yanli Wang,
John B. Anderson,
Jie Chen,
Lewis Y. Geer,
Siqian He,
David I. Hurwitz,
Cynthia A. Liebert,
Thomas Madej,
Gabriele H. Marchler,
Aron Marchler-Bauer,
Anna R. Panchenko,
Benjamin A. Shoemaker,
James S. Song,
Paul A. Thiessen,
Roxanne A. Yamashita,
Stephen H. Bryant:
MMDB: Entrez's 3D-structure database.
Nucleic Acids Research 30(1): 249-252 (2002) |
| 5 | | Aron Marchler-Bauer,
Anna R. Panchenko,
Benjamin A. Shoemaker,
Paul A. Thiessen,
Lewis Y. Geer,
Stephen H. Bryant:
CDD: a database of conserved domain alignments with links to domain three-dimensional structure.
Nucleic Acids Research 30(1): 281-283 (2002) |
| 2000 |
|---|
| 4 | | S. J. Wheelan,
Aron Marchler-Bauer,
Stephen H. Bryant:
Domain size distributions can predict domain boundaries.
Bioinformatics 16(7): 613-618 (2000) |
| 3 | | Yanli Wang,
Kenneth J. Addess,
Lewis Y. Geer,
Thomas Madej,
Aron Marchler-Bauer,
Diane Zimmerman,
Stephen H. Bryant:
MMDB: 3D structure data in Entrez.
Nucleic Acids Research 28(1): 243-245 (2000) |
| 1999 |
|---|
| 2 | | Aron Marchler-Bauer,
Kenneth J. Addess,
Colombe Chappey,
Lewis Y. Geer,
Thomas Madej,
Yo Matsuo,
Yanli Wang,
Stephen H. Bryant:
MMDB: Entrez's 3D structure database.
Nucleic Acids Research 27(1): 240-243 (1999) |
| 1995 |
|---|
| 1 | | Hitomi Ohkawa,
James Ostell,
Stephen H. Bryant:
MMDB: An ASN.1 Specification for Macromolecular Structure.
ISMB 1995: 259-267 |
Data released under the ODC-BY 1.0 license — See also our legal information page