 | 2012 |
| 16 |  | Jason E. Stajich,
Todd Harris,
Brian P. Brunk,
John Brestelli,
Steve Fischer,
Omar S. Harb,
Jessica C. Kissinger,
Wei Li,
Vishal Nayak,
Deborah F. Pinney,
Christian J. Stoeckert Jr.,
David S. Roos:
FungiDB: an integrated functional genomics database for fungi.
Nucleic Acids Research 40(Database-Issue): 675-681 (2012) |
| 15 |  | Flora J. Logan-Klumpler,
Nishadi De Silva,
Ulrike Böhme,
Matthew B. Rogers,
Giles Velarde,
Jacqueline A. McQuillan,
Tim Carver,
Martin Aslett,
Christian Olsen,
Sandhya Subramanian,
Isabelle Phan,
Carol Farris,
Siddhartha Mitra,
Gowthaman Ramasamy,
Haiming Wang,
Adrian Tivey,
Andrew Jackson,
Robin Houston,
Julian Parkhill,
Matthew Holden,
Omar S. Harb,
Brian P. Brunk,
Peter J. Myler,
David S. Roos,
Mark Carrington,
Deborah F. Smith,
Christiane Hertz-Fowler,
Matthew Berriman:
GeneDB - an annotation database for pathogens.
Nucleic Acids Research 40(Database-Issue): 98-108 (2012) |
| 2011 |
| 14 |  | Gregory R. Grant,
Michael H. Farkas,
Angel D. Pizarro,
Nicholas F. Lahens,
Jonathan Schug,
Brian P. Brunk,
Christian J. Stoeckert Jr.,
John B. Hogenesch,
Eric A. Pierce:
Comparative analysis of RNA-Seq alignment algorithms and the RNA-Seq unified mapper (RUM).
Bioinformatics 27(18): 2518-2528 (2011) |
| 13 |  | Cristina Aurrecoechea,
Ana Barreto,
John Brestelli,
Brian P. Brunk,
Elisabet V. Caler,
Steve Fischer,
Bindu Gajria,
Xin Gao,
Alan Gingle,
Gregory R. Grant,
Omar S. Harb,
Mark Heiges,
John Iodice,
Jessica C. Kissinger,
Eileen Kraemer,
Wei Li,
Vishal Nayak,
Cary Pennington,
Deborah F. Pinney,
Brian Pitts,
David S. Roos,
Ganesh Srinivasamoorthy,
Christian J. Stoeckert Jr.,
Charles Treatman,
Haiming Wang:
AmoebaDB and MicrosporidiaDB: functional genomic resources for Amoebozoa and Microsporidia species.
Nucleic Acids Research 39(Database-Issue): 612-619 (2011) |
| 2010 |
| 12 |  | Cristina Aurrecoechea,
John Brestelli,
Brian P. Brunk,
Steve Fischer,
Bindu Gajria,
Xin Gao,
Alan Gingle,
Gregory R. Grant,
Omar S. Harb,
Mark Heiges,
Frank Innamorato,
John Iodice,
Jessica C. Kissinger,
Eileen Kraemer,
Wei Li,
John A. Miller,
Vishal Nayak,
Cary Pennington,
Deborah F. Pinney,
David S. Roos,
Chris Ross,
Ganesh Srinivasamoorthy,
Christian J. Stoeckert Jr.,
Ryan Thibodeau,
Charles Treatman,
Haiming Wang:
EuPathDB: a portal to eukaryotic pathogen databases.
Nucleic Acids Research 38(Database-Issue): 415-419 (2010) |
| 11 |  | Martin Aslett,
Cristina Aurrecoechea,
Matthew Berriman,
John Brestelli,
Brian P. Brunk,
Mark Carrington,
Daniel P. Depledge,
Steve Fischer,
Bindu Gajria,
Xin Gao,
Malcolm J. Gardner,
Alan Gingle,
Gregory R. Grant,
Omar S. Harb,
Mark Heiges,
Christiane Hertz-Fowler,
Robin Houston,
Frank Innamorato,
John Iodice,
Jessica C. Kissinger,
Eileen Kraemer,
Wei Li,
Flora J. Logan,
John A. Miller,
Siddhartha Mitra,
Peter J. Myler,
Vishal Nayak,
Cary Pennington,
Isabelle Phan,
Deborah F. Pinney,
Gowthaman Ramasamy,
Matthew B. Rogers,
David S. Roos,
Chris Ross,
Dhileep Sivam,
Deborah F. Smith,
Ganesh Srinivasamoorthy,
Christian J. Stoeckert Jr.,
Sandhya Subramanian,
Ryan Thibodeau,
Adrian Tivey,
Charles Treatman,
Giles Velarde,
Haiming Wang:
TriTrypDB: a functional genomic resource for the Trypanosomatidae.
Nucleic Acids Research 38(Database-Issue): 457-462 (2010) |
| 2009 |
| 10 |  | Cristina Aurrecoechea,
John Brestelli,
Brian P. Brunk,
Jane M. Carlton,
Jennifer Dommer,
Steve Fischer,
Bindu Gajria,
Xin Gao,
Alan Gingle,
Gregory R. Grant,
Omar S. Harb,
Mark Heiges,
Frank Innamorato,
John Iodice,
Jessica C. Kissinger,
Eileen Kraemer,
Wei Li,
John A. Miller,
Hilary G. Morrison,
Vishal Nayak,
Cary Pennington,
Deborah F. Pinney,
David S. Roos,
Chris Ross,
Christian J. Stoeckert Jr.,
Steven Sullivan,
Charles Treatman,
Haiming Wang:
GiardiaDB and TrichDB: integrated genomic resources for the eukaryotic protist pathogens Giardia lamblia and Trichomonas vaginalis.
Nucleic Acids Research 37(Database-Issue): 526-530 (2009) |
| 9 |  | Cristina Aurrecoechea,
John Brestelli,
Brian P. Brunk,
Jennifer Dommer,
Steve Fischer,
Bindu Gajria,
Xin Gao,
Alan Gingle,
Gregory R. Grant,
Omar S. Harb,
Mark Heiges,
Frank Innamorato,
John Iodice,
Jessica C. Kissinger,
Eileen Kraemer,
Wei Li,
John A. Miller,
Vishal Nayak,
Cary Pennington,
Deborah F. Pinney,
David S. Roos,
Chris Ross,
Christian J. Stoeckert Jr.,
Charles Treatman,
Haiming Wang:
PlasmoDB: a functional genomic database for malaria parasites.
Nucleic Acids Research 37(Database-Issue): 539-543 (2009) |
| 2008 |
| 8 |  | Bindu Gajria,
Amit Bahl,
John Brestelli,
Jennifer Dommer,
Steve Fischer,
Xin Gao,
Mark Heiges,
John Iodice,
Jessica C. Kissinger,
Aaron J. Mackey,
Deborah F. Pinney,
David S. Roos,
Christian J. Stoeckert Jr.,
Haiming Wang,
Brian P. Brunk:
ToxoDB: an integrated Toxoplasma gondii database resource.
Nucleic Acids Research 36(Database-Issue): 553-556 (2008) |
| 2003 |
| 7 |  | Amit Bahl,
Brian P. Brunk,
Jonathan Crabtree,
Martin J. Fraunholz,
Bindu Gajria,
Gregory R. Grant,
Hagai Ginsburg,
Dinesh Gupta,
Jessica C. Kissinger,
Philip Labo,
Li Li,
Matthew D. Mailman,
Arthur J. Milgram,
David S. Pearson,
David S. Roos,
Jonathan Schug,
Christian J. Stoeckert Jr.,
Patricia L. Whetzel:
PlasmoDB: the Plasmodium genome resource. A database integrating experimental and computational data.
Nucleic Acids Research 31(1): 212-215 (2003) |
| 2002 |
| 6 |  | Amit Bahl,
Brian P. Brunk,
Ross L. Coppel,
Jonathan Crabtree,
Sharon J. Diskin,
Martin J. Fraunholz,
Gregory R. Grant,
Dinesh Gupta,
Robert L. Huestis,
Jessica C. Kissinger,
Philip Labo,
Li Li,
Shannon K. McWeeney,
Arthur J. Milgram,
David S. Roos,
Jonathan Schug,
Christian J. Stoeckert Jr.:
PlasmoDB: the Plasmodium genome resource. An integrated database providing tools for accessing, analyzing and mapping expression and sequence data (both finished and unfinished).
Nucleic Acids Research 30(1): 87-90 (2002) |
| 2001 |
| 5 |  | Christian J. Stoeckert Jr.,
Angel D. Pizarro,
Elisabetta Manduchi,
M. Gibson,
Brian P. Brunk,
Jonathan Crabtree,
Jonathan Schug,
Shai Shen-Orr,
G. Christian Overton:
A relational schema for both array-based and SAGE gene expression experiments.
Bioinformatics 17(4): 300-308 (2001) |
| 4 |  | Susan B. Davidson,
Jonathan Crabtree,
Brian P. Brunk,
Jonathan Schug,
Val Tannen,
G. Christian Overton,
Christian J. Stoeckert Jr.:
K2/Kleisli and GUS: Experiments in integrated access to genomic data sources.
IBM Systems Journal 40(2): 512-531 (2001) |
| 1999 |
| 3 |  | Steve Fischer,
Jonathan Crabtree,
Brian P. Brunk,
M. Gibson,
G. Christian Overton:
bioWidgets: data interaction components for genomics.
Bioinformatics 15(10): 837-846 (1999) |
| 2 |  | Christian J. Stoeckert Jr.,
Fidel Salas,
Brian P. Brunk,
G. Christian Overton:
EpoDB: a prototype database for the analysis of genes expressed during vertebrate erythropoiesis.
Nucleic Acids Research 27(1): 200-203 (1999) |
| 1998 |
| 1 |  | Fidel Salas,
Juergen Haas,
Brian P. Brunk,
Christian J. Stoeckert Jr.,
G. Christian Overton:
EpoDB: a database of genes expressed during vertebrate erythropoiesis.
Nucleic Acids Research 26(1): 288-289 (1998) |