Søren Brunak

	2011
54		Qiyuan Li, Aron C. Eklund, Nicolai J. Birkbak, Christine Desmedt, Benjamin Haibe-Kains, Christos Sotiriou, W. Fraser Symmans, Lajos Pusztai, Søren Brunak, Andrea L. Richardson, Zoltan Szallasi: Consistent metagenes from cancer expression profiles yield agent specific predictors of chemotherapy response. BMC Bioinformatics 12: 310 (2011)
53		Kai Wang, Rasmus Wernersson, Søren Brunak: The strength of intron donor splice sites in human genes displays a bell-shaped pattern. Bioinformatics 27(22): 3079-3084 (2011)
52		Olivier Taboureau, Sonny Kim Nielsen, Karine Audouze, Nils Weinhold, Daniel Edsgärd, Francisco S. Roque, Irene Kouskoumvekaki, Alina Bora, Ramona Curpan, Thomas Skøt Jensen, Søren Brunak, Tudor I. Oprea: ChemProt: a disease chemical biology database. Nucleic Acids Research 39(Database-Issue): 367-372 (2011)
51		Francisco S. Roque, Peter B. Jensen, Henriette Schmock, Marlene Dalgaard, Massimo Andreatta, Thomas Hansen, Karen Søeby, Søren Bredkjær, Anders Juul, Thomas Werge, Lars Juhl Jensen, Søren Brunak: Using Electronic Patient Records to Discover Disease Correlations and Stratify Patient Cohorts. PLoS Computational Biology 7(8): (2011)
	2010
50		Nicholas Paul Gauthier, Lars Juhl Jensen, Rasmus Wernersson, Søren Brunak, Thomas Skøt Jensen: Cyclebase.org: version 2.0, an updated comprehensive, multi-species repository of cell cycle experiments and derived analysis results. Nucleic Acids Research 38(Database-Issue): 699-702 (2010)
49		Karine Audouze, Agnieszka Sierakowska Juncker, Francisco S. Roque, Konrad Krysiak-Baltyn, Nils Weinhold, Olivier Taboureau, Thomas Skøt Jensen, Søren Brunak: Deciphering Diseases and Biological Targets for Environmental Chemicals using Toxicogenomics Networks. PLoS Computational Biology 6(5): (2010)
	2009
48		Francesco Pappalardo, Mark D. Halling-Brown, Nicolas Rapin, Ping Zhang, Davide Alemani, Andrew Emerson, Paola Paci, Patrice Duroux, Marzio Pennisi, Arianna Palladini, Olivo Miotto, Daniel Churchill, Elda Rossi, Adrian J. Shepherd, David S. Moss, Filippo Castiglione, Massimo Bernaschi, Marie-Paule Lefranc, Søren Brunak, Santo Motta, Pierluigi Lollini, Kaye E. Basford, Vladimir Brusic: ImmunoGrid, an integrative environment for large-scale simulation of the immune system for vaccine discovery, design and optimization. Briefings in Bioinformatics 10(3): 330-340 (2009)
	2008
47		Nicholas Paul Gauthier, Malene Erup Larsen, Rasmus Wernersson, Ulrik de Lichtenberg, Lars Juhl Jensen, Søren Brunak, Thomas Skøt Jensen: Cyclebase.org - a comprehensive multi-organism online database of cell-cycle experiments. Nucleic Acids Research 36(Database-Issue): 854-859 (2008)
	2007
46		Frank Panitz, Henrik Stengaard, Henrik Hornshøj, Jan Gorodkin, Jakob Hedegaard, Susanna Cirera, Bo Thomsen, Lone B. Madsen, Anette Høj, Rikke K. Vingborg, Bujie Zahn, Xuegang Wang, Xuefei Wang, Rasmus Wernersson, Claus B. Jørgensen, Karsten Scheibye-Knudsen, Troels Arvin, Steen Lumholdt, Milena Sawera, Trine Green, Bente J. Nielsen, Jakob Hull Havgaard, Søren Brunak, Merete Fredholm, Christian Bendixen: SNP mining porcine ESTs with MAVIANT, a novel tool for SNP evaluation and annotation. ISMB/ECCB (Supplement of Bioinformatics) 2007: 387-391
45		Claus Lundegaard, Ole Lund, Can Kesmir, Søren Brunak, Morten Nielsen: Modeling the adaptive immune system: predictions and simulations. Bioinformatics 23(24): 3265-3275 (2007)
	2006
44		Philip E. Bourne, Søren Brunak: ISMB 2006. ISMB (Supplement of Bioinformatics) 2006: 1-2
43		Goran Neshich, Philip E. Bourne, Søren Brunak: ISMB 2006. PLoS Computational Biology 2(2): (2006)
	2005
42		Jannick Dyrløv Bendtsen, Henrik Nielsen, David Widdick, Tracy Palmer, Søren Brunak: Prediction of twin-arginine signal peptides. BMC Bioinformatics 6: 167 (2005)
41		Svava Ósk Jónsdóttir, Flemming Steen Jørgensen, Søren Brunak: Prediction methods and databases within chemoinformatics: emphasis on drugs and drug candidates. Bioinformatics 21(10): 2145-2160 (2005)
40		Ulrik de Lichtenberg, Lars Juhl Jensen, Anders Fausbøll, Thomas Skøt Jensen, Peer Bork, Søren Brunak: Comparison of computational methods for the identification of cell cycle-regulated genes. Bioinformatics 21(7): 1164-1171 (2005)
	2004
39		Claus Lundegaard, Morten Nielsen, Kasper Lamberth, Peder Worning, Christina Sylvester-Hvid, Søren Buus, Søren Brunak, Ole Lund: MHC Class I Epitope Binding Prediction Trained on Small Data Sets. ICARIS 2004: 217-225
38		Claus A. F. Andersen, Søren Brunak: Representation of Protein-Sequence Information by Amino Acid Subalphabets. AI Magazine 25(1): 97-104 (2004)
37		Lars Kiemer, Ole Lund, Søren Brunak, Nikolaj Blom: Coronavirus 3CLpro proteinase cleavage sites: Possible relevance to SARS virus pathology. BMC Bioinformatics 5: 72 (2004)
36		Morten Nielsen, Claus Lundegaard, Peder Worning, Christina Sylvester-Hvid, Kasper Lamberth, Søren Buus, Søren Brunak, Ole Lund: Improved prediction of MHC class I and class II epitopes using a novel Gibbs sampling approach. Bioinformatics 20(9): 1388-1397 (2004)
	2003
35		Claus Lundegaard, Thomas Nordahl Petersen, Morten Nielsen, Henrik Bohr, Jakob Bohr, Søren Brunak, Garry Gippert, Ole Lund: Prediction of Protein Secondary Structure at High Accuracy Using a Combination of Many Neural Networks. Mathematical Methods for Protein Structure Analysis and Design 2003: 117-122
34		Lars Juhl Jensen, Ramneek Gupta, Hans Henrik Stærfeldt, Søren Brunak: Prediction of human protein function according to Gene Ontology categories. Bioinformatics 19(5): 635-642 (2003)
33		Jens Kaae Christensen, Kasper Lamberth, Morten Nielsen, Claus Lundegaard, Peder Worning, Sanne Lise Lauemøller, Søren Buus, Søren Brunak, Ole Lund: Selecting Informative Data for Developing Peptide-MHC Binding Predictors Using a Query by Committee Approach. Neural Computation 15(12): 2931-2942 (2003)
32		Tanja la Cour, Ramneek Gupta, Kristoffer Rapacki, Karen Skriver, Flemming M. Poulsen, Søren Brunak: NESbase version 1.0: a database of nuclear export signals. Nucleic Acids Research 31(1): 393-396 (2003)
	2002
31		Ramneek Gupta, Søren Brunak: Prediction of Glycosylation Across the Human Proteome and the Correlation to Protein Function. Pacific Symposium on Biocomputing 2002: 310-322
30		Jeppe S. Spicker, Friedrik Wikman, Ming-Lan Lu, Carlos Cordon-Cardo, Christopher T. Workman, Torben F. Ørntoft, Søren Brunak, Steen Knudsen: Neural network predicts sequence of TP53 gene based on DNA chip. Bioinformatics 18(8): 1133-1134 (2002)
29		David Ussery, Dikeos Mario Soumpasis, Søren Brunak, Hans Henrik Stærfeldt, Peder Worning, Anders Krogh: Bias of Purine Stretches in Sequenced Chromosomes. Computers & Chemistry 26(5): 531-541 (2002)
	2001
28		Pierre Baldi, Søren Brunak: Bioinformatics - the machine learning approach (2. ed.). MIT Press 2001: I-XXI, 1-452
27		Søren Brunak, Anders Krogh: ISMB 2001. ISMB (Supplement of Bioinformatics) 2001: 1-4
26		Pierre Baldi, Søren Brunak: Bioethics, Fiction Science, and the Future of Mankind - Session Introduction. Pacific Symposium on Biocomputing 2001
25		Pierre Baldi, Søren Brunak, Paolo Frasconi, Gianluca Pollastri, Giovanni Soda: Bidirectional Dynamics for Protein Secondary Structure Prediction. Sequence Learning 2001: 80-104
24		Pierre-François Baisnée, Pierre Baldi, Søren Brunak, Anders Gorm Pedersen: Flexibility of the genetic code with respect to DNA structure. Bioinformatics 17(3): 237-248 (2001)
23		Jan Gorodkin, Bodil Søgaard, Hanne Bay, Hans Doll, Per Kølster, Søren Brunak: Recognition of Environmental and Genetic Effects on Barley Phenolic Fingerprints by Neural Networks. Computers & Chemistry 25(3): 301-307 (2001)
	2000
22		Pierre Baldi, Søren Brunak: Bioinformatics - the machine learning approach. MIT Press 2000: 1-44
21		Pierre Baldi, Gianluca Pollastri, Claus A. F. Andersen, Søren Brunak: Matching Protein b-Sheet Partners by Feedforward and Recurrent Neural Networks. ISMB 2000: 25-36
20		Pierre Baldi, Søren Brunak, Yves Chauvin, Claus A. F. Andersen, Henrik Nielsen: Assessing the accuracy of prediction algorithms for classification: an overview. Bioinformatics 16(5): 412-424 (2000)
19		Thomas M. Frimurer, Robert Bywater, Lars Nærum, Leif Nørskov Lauritsen, Søren Brunak: Improving the Odds in Discriminating "Drug-like" from "Non Drug-like" Compounds. Journal of Chemical Information and Computer Sciences 40(6): 1315-1324 (2000)
	1999
18		Jan Gorodkin, Ole Lund, Claus A. F. Andersen, Søren Brunak: Using Sequence Motifs for Enhanced Neural Network Prediction of Protein Distance Constraints. ISMB 1999: 95-105
17		Pierre Baldi, Søren Brunak, Yves Chauvin, Anders Gorm Pedersen: Structural basis for triplet repeat disorders: a computational analysis. Bioinformatics 15(11): 918-929 (1999)
16		Pierre Baldi, Søren Brunak, Paolo Frasconi, Giovanni Soda, Gianluca Pollastri: Exploiting the past and the future in protein secondary structure prediction. Bioinformatics 15(11): 937-946 (1999)
15		Jan Gorodkin, Hans Henrik Stærfeldt, Ole Lund, Søren Brunak: MatrixPlot: visualizing sequence constraints. Bioinformatics 15(9): 769-770 (1999)
14		Anders Gorm Pedersen, Pierre Baldi, Yves Chauvin, Søren Brunak: The Biology of Eukaryotic Promoter Prediction - A Review. Computers & Chemistry 23(3-4): 191-207 (1999)
13		Andres Kreegipuu, Nikolaj Blom, Søren Brunak: PhosphoBase, a database of phosphorylation sites: release 2.0. Nucleic Acids Research 27(1): 237-239 (1999)
12		Ramneek Gupta, Hanne Birch, Kristoffer Rapacki, Søren Brunak, Jan E. Hansen: O-GLYCBASE version 4.0: a revised database of O-glycosylated proteins. Nucleic Acids Research 27(1): 370-372 (1999)
	1998
11		Pierre Baldi, Søren Brunak, Yves Chauvin, Anders Gorm Pedersen: Computational Applications of DNA Structural Scales. ISMB 1998: 35-42
10		Nikolaj Blom, Andres Kreegipuu, Søren Brunak: PhosphoBase: a database of phosphorylation sites. Nucleic Acids Research 26(1): 382-386 (1998)
9		Jan E. Hansen, Ole Lund, Jette Nilsson, Kristoffer Rapacki, Søren Brunak: O-GLYCBASE Version 3.0: a revised database of O-glycosylated proteins. Nucleic Acids Research 26(1): 387-389 (1998)
	1997
8		Jan Gorodkin, Laurie J. Heyer, Søren Brunak, Gary D. Stormo: Displaying the information contents of structural RNA alignments: the structure logos. Computer Applications in the Biosciences 13(6): 583-586 (1997)
7		Henrik Nielsen, Jacob Engelbrecht, Søren Brunak, Gunnar von Heijne: A Neural Network Method for Identification of Prokaryotic and Eukaryotic Signal Peptides and Prediction of their Cleavage Sites. Int. J. Neural Syst. 8(5-6): 581-599 (1997)
6		Jan E. Hansen, Ole Lund, Kristoffer Rapacki, Søren Brunak: O-GLYCBASE version 2.0: a revised database of O-glycosylated proteins. Nucleic Acids Research 25(1): 278-282 (1997)
	1996
5		Anders Gorm Pedersen, Pierre Baldi, Søren Brunak, Yves Chauvin: Characterization of Prokaryotic and Eukaryotic Promoters Using Hidden Markov Models. ISMB 1996: 182-191
4		Jan E. Hansen, Ole Lund, Jens O. Nielsen, John-E. S. Hansen, Søren Brunak: O-GLYCBASE: a revised database of O-glycosylated proteins. Nucleic Acids Research 24(1): 248-252 (1996)
	1995
3		Pierre Baldi, Søren Brunak, Yves Chauvin, Jacob Engelbrecht, Anders Krogh: Periodic Sequence Patterns in Human Exons. ISMB 1995: 30-38
	1993
2		Pierre Baldi, Søren Brunak, Yves Chauvin, Jacob Engelbrecht, Anders Krogh: Hidden Markov Models for Human Genes. NIPS 1993: 761-768
	1990
1		Henrik Fredholm, Henrik Bohr, Jakob Bohr, Søren Brunak, Rodney M. J. Cotterill, Benny Lautrup, Steffen B. Petersen: A Novel Approach to Prediction of the 3-Dimensional Structures. NIPS 1990: 523-529

Coauthor Index

1	Davide Alemani	[48]
2	Claus A. F. Andersen	[18] [20] [21] [38]
3	Massimo Andreatta	[51]
4	Troels Arvin	[46]
5	Karine Audouze	[49] [52]
6	Pierre-François Baisnée	[24]
7	Pierre Baldi	[2] [3] [5] [11] [14] [16] [17] [20] [21] [22] [24] [25] [26] [28]
8	Kaye E. Basford	[48]
9	Hanne Bay	[23]
10	Christian Bendixen	[46]
11	Jannick Dyrløv Bendtsen	[42]
12	Massimo Bernaschi	[48]
13	Hanne Birch	[12]
14	Nicolai J. Birkbak	[54]
15	Nikolaj Blom	[10] [13] [37]
16	Henrik Bohr	[1] [35]
17	Jakob Bohr	[1] [35]
18	Alina Bora	[52]
19	Peer Bork	[40]
20	Philip E. Bourne	[43] [44]
21	Søren Bredkjær	[51]
22	Vladimir Brusic	[48]
23	Søren Buus	[33] [36] [39]
24	Robert Bywater	[19]
25	Filippo Castiglione	[48]
26	Yves Chauvin	[2] [3] [5] [11] [14] [17] [20]
27	Jens Kaae Christensen	[33]
28	Daniel Churchill	[48]
29	Susanna Cirera	[46]
30	Carlos Cordon-Cardo	[30]
31	Rodney M. J. Cotterill	[1]
32	Tanja la Cour	[32]
33	Ramona Curpan	[52]
34	Marlene Dalgaard	[51]
35	Christine Desmedt	[54]
36	Hans Doll	[23]
37	Patrice Duroux	[48]
38	Daniel Edsgärd	[52]
39	Aron C. Eklund	[54]
40	Andrew Emerson	[48]
41	Jacob Engelbrecht	[2] [3] [7]
42	Anders Fausbøll	[40]
43	Paolo Frasconi	[16] [25]
44	Henrik Fredholm	[1]
45	Merete Fredholm	[46]
46	Thomas M. Frimurer	[19]
47	Nicholas Paul Gauthier	[47] [50]
48	Garry Gippert	[35]
49	Jan Gorodkin	[8] [15] [18] [23] [46]
50	Trine Green	[46]
51	Ramneek Gupta	[12] [31] [32] [34]
52	Benjamin Haibe-Kains	[54]
53	Mark D. Halling-Brown	[48]
54	Jan E. Hansen	[4] [6] [9] [12]
55	John-E. S. Hansen	[4]
56	Thomas Hansen	[51]
57	Jakob Hull Havgaard	[46]
58	Jakob Hedegaard	[46]
59	Gunnar von Heijne	[7]
60	Laurie J. Heyer	[8]
61	Anette Høj	[46]
62	Henrik Hornshøj	[46]
63	Lars Juhl Jensen	[34] [40] [47] [50] [51]
64	Peter B. Jensen	[51]
65	Thomas Skøt Jensen	[40] [47] [49] [50] [52]
66	Svava Ósk Jónsdóttir	[41]
67	Claus B. Jørgensen	[46]
68	Flemming Steen Jørgensen	[41]
69	Agnieszka Sierakowska Juncker	[49]
70	Anders Juul	[51]
71	Can Kesmir	[45]
72	Lars Kiemer	[37]
73	Steen Knudsen	[30]
74	Per Kølster	[23]
75	Irene Kouskoumvekaki	[52]
76	Andres Kreegipuu	[10] [13]
77	Anders Krogh	[2] [3] [27] [29]
78	Konrad Krysiak-Baltyn	[49]
79	Kasper Lamberth	[33] [36] [39]
80	Malene Erup Larsen	[47]
81	Sanne Lise Lauemøller	[33]
82	Leif Nørskov Lauritsen	[19]
83	Benny Lautrup	[1]
84	Marie-Paule Lefranc	[48]
85	Qiyuan Li	[54]
86	Ulrik de Lichtenberg	[40] [47]
87	Pierluigi Lollini	[48]
88	Ming-Lan Lu	[30]
89	Steen Lumholdt	[46]
90	Ole Lund	[4] [6] [9] [15] [18] [33] [35] [36] [37] [39] [45]
91	Claus Lundegaard	[33] [35] [36] [39] [45]
92	Lone B. Madsen	[46]
93	Olivo Miotto	[48]
94	David S. Moss	[48]
95	Santo Motta	[48]
96	Lars Nærum	[19]
97	Goran Neshich	[43]
98	Bente J. Nielsen	[46]
99	Henrik Nielsen	[7] [20] [42]
100	Jens O. Nielsen	[4]
101	Morten Nielsen	[33] [35] [36] [39] [45]
102	Sonny Kim Nielsen	[52]
103	Jette Nilsson	[9]
104	Tudor I. Oprea	[52]
105	Torben F. Ørntoft	[30]
106	Paola Paci	[48]
107	Arianna Palladini	[48]
108	Tracy Palmer	[42]
109	Frank Panitz	[46]
110	Francesco Pappalardo	[48]
111	Anders Gorm Pedersen	[5] [11] [14] [17] [24]
112	Marzio Pennisi	[48]
113	Steffen B. Petersen	[1]
114	Thomas Nordahl Petersen	[35]
115	Gianluca Pollastri	[16] [21] [25]
116	Flemming M. Poulsen	[32]
117	Lajos Pusztai	[54]
118	Kristoffer Rapacki	[6] [9] [12] [32]
119	Nicolas Rapin	[48]
120	Andrea L. Richardson	[54]
121	Francisco S. Roque	[49] [51] [52]
122	Elda Rossi	[48]
123	Milena Sawera	[46]
124	Karsten Scheibye-Knudsen	[46]
125	Henriette Schmock	[51]
126	Adrian J. Shepherd	[48]
127	Karen Skriver	[32]
128	Giovanni Soda	[16] [25]
129	Karen Søeby	[51]
130	Bodil Søgaard	[23]
131	Christos Sotiriou	[54]
132	Dikeos Mario Soumpasis	[29]
133	Jeppe S. Spicker	[30]
134	Hans Henrik Stærfeldt	[15] [29] [34]
135	Henrik Stengaard	[46]
136	Gary D. Stormo	[8]
137	Christina Sylvester-Hvid	[36] [39]
138	W. Fraser Symmans	[54]
139	Zoltan Szallasi	[54]
140	Olivier Taboureau	[49] [52]
141	Bo Thomsen	[46]
142	David Ussery	[29]
143	Rikke K. Vingborg	[46]
144	Kai Wang	[53]
145	Xuefei Wang	[46]
146	Xuegang Wang	[46]
147	Nils Weinhold	[49] [52]
148	Thomas Werge	[51]
149	Rasmus Wernersson	[46] [47] [50] [53]
150	David Widdick	[42]
151	Friedrik Wikman	[30]
152	Christopher T. Workman	[30]
153	Peder Worning	[29] [33] [36] [39]
154	Bujie Zahn	[46]
155	Ping Zhang	[48]

Colors in the list of coauthors

Last update Sun May 27 04:04:01 2012 CET by the DBLP Team — Data released under the ODC-BY 1.0 license — See also our legal information page