Michael Brudno

	2011
31		Nilgun Donmez, Michael Brudno: Hapsembler: An Assembler for Highly Polymorphic Genomes. RECOMB 2011: 38-52
30		Joseph Andrew Whitney, Judice L. Y. Koh, Michael Costanzo, Grant Brown, Charles Boone, Michael Brudno: Clustering with Overlap for Genetic Interaction Networks via Local Search Optimization. WABI 2011: 326-338
29		H. Andrés Lagar-Cavilla, Joseph Andrew Whitney, Roy Bryant, Philip Patchin, Michael Brudno, Eyal de Lara, Stephen M. Rumble, M. Satyanarayanan, Adin Scannell: SnowFlock: Virtual Machine Cloning as a First-Class Cloud Primitive. ACM Trans. Comput. Syst. 29(1): 2 (2011)
28		Matei David, Misko Dzamba, Dan Lister, Lucian Ilie, Michael Brudno: SHRiMP2: Sensitive yet Practical Short Read Mapping. Bioinformatics 27(7): 1011-1012 (2011)
	2010
27		Can Alkan, Michael Brudno, Evan E. Eichler, Maricel G. Kann, Süleyman Cenk Sahinalp: Session Introduction. Pacific Symposium on Biocomputing 2010: 302-304
26		Seunghak Lee, Eric P. Xing, Michael Brudno: MoGUL: Detecting Common Insertions and Deletions in a Population. RECOMB 2010: 357-368
25		Marc Fiume, Vanessa Williams, Andrew Brook, Michael Brudno: Savant: genome browser for high-throughput sequencing data. Bioinformatics 26(16): 1938-1944 (2010)
24		Adrian V. Dalca, Stephen M. Rumble, Samuel Levy, Michael Brudno: VARiD: A variation detection framework for color-space and letter-space platforms. Bioinformatics [ISMB] 26(12): 343-349 (2010)
23		Adrian V. Dalca, Michael Brudno: Genome variation discovery with high-throughput sequencing data. Briefings in Bioinformatics 11(1): 3-14 (2010)
	2009
22		Horacio Andrés Lagar-Cavilla, Joseph Andrew Whitney, Adin Matthew Scannell, Philip Patchin, Stephen M. Rumble, Eyal de Lara, Michael Brudno, Mahadev Satyanarayanan: SnowFlock: rapid virtual machine cloning for cloud computing. EuroSys 2009: 1-12
21		Michael Brudno, Paul Medvedev, Jens Stoye, Francisco M. de la Vega: A report on the 2009 SIG on short read sequencing and algorithms (Short-SIG). Bioinformatics 25(21): 2863-2864 (2009)
20		Stephen M. Rumble, Phil Lacroute, Adrian V. Dalca, Marc Fiume, Arend Sidow, Michael Brudno: SHRiMP: Accurate Mapping of Short Color-space Reads. PLoS Computational Biology 5(5): (2009)
	2008
19		Seunghak Lee, Elango Cheran, Michael Brudno: A robust framework for detecting structural variations in a genome. ISMB 2008: 59-67
18		Gerald Quon, Yee Whye Teh, Esther T. Chan, Timothy R. Hughes, Michael Brudno, Quaid Morris: A mixture model for the evolution of gene expression in non-homogeneous datasets. NIPS 2008: 1297-1304
17		Michael Brudno, Bernard M. E. Moret, C. Randal Linder, Tandy Warnow: Session Introduction. Pacific Symposium on Biocomputing 2008: 1-2
16		Adrian V. Dalca, Michael Brudno: FRESCO: Flexible Alignment with Rectangle Scoring Schemes. Pacific Symposium on Biocomputing 2008: 3-14
15		Paul Medvedev, Michael Brudno: Ab Initio Whole Genome Shotgun Assembly with Mated Short Reads. RECOMB 2008: 50-64
14		Vladimir Yanovski, Stephen M. Rumble, Michael Brudno: Read Mapping Algorithms for Single Molecule Sequencing Data. WABI 2008: 38-49
	2007
13		Paul Medvedev, Konstantinos Georgiou, Gene Myers, Michael Brudno: Computability of Models for Sequence Assembly. WABI 2007: 289-301
12		Michael Brudno, Alexander Poliakov, Simon Minovitsky, Igor Ratnere, Inna Dubchak: Multiple whole genome alignments and novel biomedical applications at the VISTA portal. Nucleic Acids Research 35(Web-Server-Issue): 669-674 (2007)
	2006
11		Galina Yu. Kovaleva, Georgii A. Bazykin, Michael Brudno, Mikhail S. Gelfand: Comparative Genomics of Transcriptional Regulation in Yeasts and its Application to Identification of a Candidate Alpha-isopropylmalate Transporter. J. Bioinformatics and Computational Biology 4(5): 981-998 (2006)
	2004
10		Chuong B. Do, Michael Brudno, Serafim Batzoglou: PROBCONS: Probabilistic Consistency-Based Multiple Alignment of Amino Acid Sequences. AAAI 2004: 703-708
9		Mukund Sundararajan, Michael Brudno, Kerrin Small, Arend Sidow, Serafim Batzoglou: Chaining Algorithms for Alignment of Draft Sequence. WABI 2004: 326-337
8		Nameeta Shah, Olivier Couronne, Len A. Pennacchio, Michael Brudno, Serafim Batzoglou, E. Wes Bethel, Edward M. Rubin, Bernd Hamann, Inna Dubchak: Phylo-VISTA: interactive visualization of multiple DNA sequence alignments. Bioinformatics 20(5): 636-643 (2004)
7		Michael Brudno, Rasmus Steinkamp, Burkhard Morgenstern: The CHAOS/DIALIGN WWW server for multiple alignment of genomic sequences. Nucleic Acids Research 32(Web-Server-Issue): 41-44 (2004)
	2003
6		Michael Brudno, Sanket Malde, Alexander Poliakov, Chuong B. Do, Olivier Couronne, Inna Dubchak, Serafim Batzoglou: Glocal alignment: finding rearrangements during alignment. ISMB (Supplement of Bioinformatics) 2003: 54-62
5		Michael Brudno, Michael Chapman, Berthold Göttgens, Serafim Batzoglou, Burkhard Morgenstern: Fast and sensitive multiple alignment of large genomic sequences. BMC Bioinformatics 4: 66 (2003)
4		Leila Taher, Oliver Rinner, Saurabh Garg, Alexander Sczyrba, Michael Brudno, Serafim Batzoglou, Burkhard Morgenstern: AGenDA: homology-based gene prediction. Bioinformatics 19(12): 1575-1577 (2003)
	2002
3		Michael Brudno, Burkhard Morgenstern: Fast and Sensitive Alignment of Large Genomic Sequences. CSB 2002: 138-
	2000
2		Chris Mayor, Michael Brudno, Jody R. Schwartz, Alexander Poliakov, Edward M. Rubin, Kelly A. Frazer, Lior Pachter, Inna Dubchak: VISTA : visualizing global DNA sequence alignments of arbitrary length. Bioinformatics 16(11): 1046-1047 (2000)
1		I. Dralyuk, Michael Brudno, Mikhail S. Gelfand, Manfred Zorn, Inna Dubchak: ASDB: database of alternatively spliced genes. Nucleic Acids Research 28(1): 296-297 (2000)

Coauthor Index

1	Can Alkan	[27]
2	Serafim Batzoglou	[4] [5] [6] [8] [9] [10]
3	Georgii A. Bazykin	[11]
4	E. Wes Bethel (Wes Bethel)	[8]
5	Charles Boone	[30]
6	Andrew Brook	[25]
7	Grant Brown	[30]
8	Roy Bryant	[29]
9	Esther T. Chan	[18]
10	Michael Chapman	[5]
11	Elango Cheran	[19]
12	Michael Costanzo	[30]
13	Olivier Couronne	[6] [8]
14	Adrian V. Dalca	[16] [20] [23] [24]
15	Matei David	[28]
16	Chuong B. Do	[6] [10]
17	Nilgun Donmez	[31]
18	I. Dralyuk	[1]
19	Inna Dubchak	[1] [2] [6] [8] [12]
20	Misko Dzamba	[28]
21	Evan E. Eichler	[27]
22	Marc Fiume	[20] [25]
23	Kelly A. Frazer	[2]
24	Saurabh Garg	[4]
25	Mikhail S. Gelfand	[1] [11]
26	Konstantinos Georgiou (Constantinos Georgiou)	[13]
27	Berthold Göttgens	[5]
28	Bernd Hamann	[8]
29	Timothy R. Hughes	[18]
30	Lucian Ilie	[28]
31	Maricel G. Kann	[27]
32	Judice L. Y. Koh	[30]
33	Galina Yu. Kovaleva	[11]
34	Phil Lacroute	[20]
35	H. Andrés Lagar-Cavilla (Horacio Andrés Lagar-Cavilla)	[22] [29]
36	Eyal de Lara	[22] [29]
37	Seunghak Lee	[19] [26]
38	Samuel Levy	[24]
39	C. Randal Linder	[17]
40	Dan Lister	[28]
41	Sanket Malde	[6]
42	Chris Mayor	[2]
43	Paul Medvedev	[13] [15] [21]
44	Simon Minovitsky	[12]
45	Bernard M. E. Moret	[17]
46	Burkhard Morgenstern	[3] [4] [5] [7]
47	Quaid Morris	[18]
48	Eugene W. Myers (Gene Myers)	[13]
49	Lior Pachter	[2]
50	Philip Patchin	[22] [29]
51	Len A. Pennacchio	[8]
52	Alexander Poliakov	[2] [6] [12]
53	Gerald Quon	[18]
54	Igor Ratnere	[12]
55	Oliver Rinner	[4]
56	Edward M. Rubin	[2] [8]
57	Stephen M. Rumble	[14] [20] [22] [24] [29]
58	Süleyman Cenk Sahinalp	[27]
59	Mahadev Satyanarayanan (M. Satyanarayanan)	[22] [29]
60	Adin Scannell (Adin Matthew Scannell)	[22] [29]
61	Jody R. Schwartz	[2]
62	Alexander Sczyrba	[4]
63	Nameeta Shah	[8]
64	Arend Sidow	[9] [20]
65	Kerrin Small	[9]
66	Rasmus Steinkamp	[7]
67	Jens Stoye	[21]
68	Mukund Sundararajan	[9]
69	Leila Taher	[4]
70	Yee Whye Teh	[18]
71	Francisco M. de la Vega	[21]
72	Tandy Warnow	[17]
73	Joseph Andrew Whitney	[22] [29] [30]
74	Vanessa Williams	[25]
75	Eric P. Xing	[26]
76	Vladimir Yanovski	[14]
77	Manfred Zorn	[1]

Colors in the list of coauthors

Last update Sun May 27 04:04:01 2012 CET by the DBLP Team — Data released under the ODC-BY 1.0 license — See also our legal information page