Charles L. Brooks III

	2012
41		Joseph D. Yesselman, Daniel J. Price, Jennifer L. Knight, Charles L. Brooks III: MATCH: An atom-typing toolset for molecular mechanics force fields. Journal of Computational Chemistry 33(2): 189-202 (2012)
	2011
40		Jennifer L. Knight, Charles L. Brooks III: Surveying implicit solvent models for estimating small molecule absolute hydration free energies. Journal of Computational Chemistry 32(13): 2909-2923 (2011)
39		Jennifer L. Knight, Charles L. Brooks III: Applying efficient implicit nongeometric constraints in alchemical free energy simulations. Journal of Computational Chemistry 32(16): 3423-3432 (2011)
	2009
38		Charles L. Brooks III: De novo modeling of GPCR class A structures. IPDPS 2009: 1
37		Gernot Frenking, Charles L. Brooks III, Shigeyoshi Sakaki: Editors' note. Journal of Computational Chemistry 30(1): 1 (2009)
36		Bernard R. Brooks, Charles L. Brooks III, Alexander D. MacKerell Jr., L. Nilsson, Robert J. Petrella, Benoît Roux, Y. Won, G. Archontis, Christian Bartels, S. Boresch, Amedeo Caflisch, Leo S. D. Caves, Qiang Cui, Aaron R. Dinner, Michael Feig, S. Fischer, Jiali Gao, Milan Hodoscek, Wonpil Im, Krzysztof Kuczera, Themis Lazaridis, J. Ma, V. Ovchinnikov, Emanuele Paci, Richard W. Pastor, C. B. Post, J. Z. Pu, Michael Schaefer, Bruce Tidor, Richard M. Venable, H. Lee Woodcock III, X. Wu, W. Yang, Darrin M. York, Martin Karplus: CHARMM: The biomolecular simulation program. Journal of Computational Chemistry 30(10): 1545-1614 (2009)
35		Jennifer L. Knight, Charles L. Brooks III: lambda-Dynamics free energy simulation methods. Journal of Computational Chemistry 30(11): 1692-1700 (2009)
34		Mauricio Carrillo-Tripp, Craig M. Shepherd, Ian A. Borelli, Sangita Venkataraman, Gabriel Lander, Padmaja Natarajan, John E. Johnson, Charles L. Brooks III, Vijay S. Reddy: VIPERdb2: an enhanced and web API enabled relational database for structural virology. Nucleic Acids Research 37(Database-Issue): 436-442 (2009)
	2008
33		Mark A. Olson, Michael Feig, Charles L. Brooks III: Prediction of protein loop conformations using multiscale modeling methods with physical energy scoring functions. Journal of Computational Chemistry 29(5): 820-831 (2008)
	2007
32		Michela Taufer, Andre Kerstens, Trilce Estrada, David A. Flores, Richard Zamudio, Patricia J. Teller, Roger Armen, Charles L. Brooks III: Moving Volunteer Computing towards Knowledge-Constructed, Dynamically-Adaptive Modeling and Scheduling. IPDPS 2007: 1-8
31		Charles L. Brooks III, Gernot Frenking, Shigeyoshi Sakaki: Letter from the Editors. Journal of Computational Chemistry 28(11): 1775 (2007)
30		David L. Bostick, Charles L. Brooks III: Deprotonation by Dehydration: The Origin of Ammonium Sensing in the AmtB Channel. PLoS Computational Biology 3(2): (2007)
	2006
29		Michela Taufer, Chahm An, Andreas Kerstens, Charles L. Brooks III: Predictor@Home: A "Protein Structure Prediction Supercomputer' Based on Global Computing. IEEE Trans. Parallel Distrib. Syst. 17(8): 786-796 (2006)
28		Craig M. Shepherd, Ian A. Borelli, Gabriel Lander, Padmaja Natarajan, Vinay Siddavanahalli, Chandrajit L. Bajaj, John E. Johnson, Charles L. Brooks III, Vijay S. Reddy: VIPERdb: a relational database for structural virology. Nucleic Acids Research 34(Database-Issue): 386-389 (2006)
	2005
27		Michela Taufer, David P. Anderson, Pietro Cicotti, Charles L. Brooks III: Homogeneous Redundancy: a Technique to Ensure Integrity of Molecular Simulation Results Using Public Computing. IPDPS 2005
26		Michela Taufer, Chahm An, Andreas Kerstens, Charles L. Brooks III: Predictor@Home: A "Protein Structure Prediction Supercomputer" Based on Public-Resource Computing. IPDPS 2005
25		Michela Taufer, Patricia J. Teller, David P. Anderson, Charles L. Brooks III: Metrics for Effective Resource Management in Global Computing Environments. e-Science 2005: 204-211
24		Michela Taufer, Michael Crowley, Daniel J. Price, Andrew A. Chien, Charles L. Brooks III: Study of a highly accurate and fast protein-ligand docking method based on molecular dynamics. Concurrency and Computation: Practice and Experience 17(14): 1627-1641 (2005)
23		Daniel J. Price, Charles L. Brooks III: Detailed considerations for a balanced and broadly applicable force field: A study of substituted benzenes modeled with OPLS-AA. Journal of Computational Chemistry 26(14): 1529-1541 (2005)
22		Jianhan Chen, Wonpil Im, Charles L. Brooks III: Application of torsion angle molecular dynamics for efficient sampling of protein conformations. Journal of Computational Chemistry 26(15): 1565-1578 (2005)
21		Charles L. Brooks III: Editorial. Journal of Computational Chemistry 26(16): 1667 (2005)
	2004
20		Derrick Kondo, Michela Taufer, Charles L. Brooks III, Henri Casanova, Andrew A. Chien: Characterizing and Evaluating Desktop Grids: An Empirical Study. IPDPS 2004
19		Michela Taufer, Michael Crowley, Daniel J. Price, Andrew A. Chien, Charles L. Brooks III: Study of a Highly Accurate and Fast Protein-Ligand Docking Algorithm Based on Molecular Dynamics. IPDPS 2004
18		Anand Natrajan, Michael Crowley, Nancy Wilkins-Diehr, Marty A. Humphrey, Anthony D. Fox, Andrew S. Grimshaw, Charles L. Brooks III: Studying protein folding on the Grid: experiences using CHARMM on NPACI resources under Legion. Concurrency and Computation: Practice and Experience 16(4): 385-397 (2004)
17		Sandeep Patel, Charles L. Brooks III: CHARMM fluctuating charge force field for proteins: I parameterization and application to bulk organic liquid simulations. Journal of Computational Chemistry 25(1): 1-16 (2004)
16		Alexander D. MacKerell Jr., Michael Feig, Charles L. Brooks III: Extending the treatment of backbone energetics in protein force fields: Limitations of gas-phase quantum mechanics in reproducing protein conformational distributions in molecular dynamics simulations. Journal of Computational Chemistry 25(11): 1400-1415 (2004)
15		Sandeep Patel, Alexander D. MacKerell Jr., Charles L. Brooks III: CHARMM fluctuating charge force field for proteins: II Protein/solvent properties from molecular dynamics simulations using a nonadditive electrostatic model. Journal of Computational Chemistry 25(12): 1504-1514 (2004)
14		Michael Feig, Alexey Onufriev, Michael S. Lee, Wonpil Im, David A. Case, Charles L. Brooks III: Performance comparison of generalized born and Poisson methods in the calculation of electrostatic solvation energies for protein structures. Journal of Computational Chemistry 25(2): 265-284 (2004)
13		Olgun Guvench, Charles L. Brooks III: Efficient approximate all-atom solvent accessible surface area method parameterized for folded and denatured protein conformations. Journal of Computational Chemistry 25(8): 1005-1014 (2004)
	2003
12		Michael S. Lee, Michael Feig, Freddie R. Salsbury Jr., Charles L. Brooks III: New analytic approximation to the standard molecular volume definition and its application to generalized Born calculations. Journal of Computational Chemistry 24(11): 1348-1356 (2003)
11		Guosheng Wu, Daniel H. Robertson, Charles L. Brooks III, Michal Vieth: Detailed analysis of grid-based molecular docking: A case study of CDOCKER - A CHARMm-based MD docking algorithm. Journal of Computational Chemistry 24(13): 1549-1562 (2003)
10		Wonpil Im, Michael S. Lee, Charles L. Brooks III: Generalized born model with a simple smoothing function. Journal of Computational Chemistry 24(14): 1691-1702 (2003)
9		Michael S. Lee, Michael Feig, Freddie R. Salsbury Jr., Charles L. Brooks III: New analytic approximation to the standard molecular volume definition and its application to generalized born calculations - Erratum. Journal of Computational Chemistry 24(14): 1821 (2003)
8		Badry D. Bursulaya, Maxim Totrov, Ruben Abagyan, Charles L. Brooks III: Comparative study of several algorithms for flexible ligand docking. Journal of Computer-Aided Molecular Design 17(11): 755-763 (2003)
	2002
7		Brian N. Dominy, Charles L. Brooks III: Identifying native-like protein structures using physics-based potentials. Journal of Computational Chemistry 23(1): 147-160 (2002)
6		Daniel J. Price, Charles L. Brooks III: Modern protein force fields behave comparably in molecular dynamics simulations. Journal of Computational Chemistry 23(11): 1045-1057 (2002)
	2001
5		Anand Natrajan, Anthony D. Fox, Marty A. Humphrey, Andrew S. Grimshaw, Nancy Wilkins-Diehr, Michael Crowley, Charles L. Brooks III: Studying Protein Folding on the Grid: Experiences Using CHARMM on NPACI Resources under Legion. HPDC 2001: 14-21
	1998
4		Michal Vieth, Jonathan D. Hirst, Andrzej Kolinski, Charles L. Brooks III: Assessing energy functions for flexible docking. Journal of Computational Chemistry 19(14): 1612-1622 (1998)
3		Michal Vieth, Jonathan D. Hirst, Brian N. Dominy, Heidi Daigler, Charles L. Brooks III: Assessing search strategies for flexible docking. Journal of Computational Chemistry 19(14): 1623-1631 (1998)
	1995
2		William S. Young, Charles L. Brooks III: Dynamic Load Balancing Algorithms for Replicated Data Molecular Dynamics. Journal of Computational Chemistry 16(6): 715-722 (1995)
	1994
1		William S. Young, Charles L. Brooks III: Implementation of a Data Parallel, Logical Domain Decomposition Method for Interparticle Interactions in Molecular Dynamics of Structured Molecular Fluids. Journal of Computational Chemistry 15(1): 44-53 (1994)

Coauthor Index

1	Ruben Abagyan	[8]
2	Chahm An	[26] [29]
3	David P. Anderson	[25] [27]
4	G. Archontis	[36]
5	Roger Armen	[32]
6	Chandrajit L. Bajaj	[28]
7	Christian Bartels	[36]
8	Ian A. Borelli	[28] [34]
9	S. Boresch	[36]
10	David L. Bostick	[30]
11	Bernard R. Brooks	[36]
12	Badry D. Bursulaya	[8]
13	Amedeo Caflisch	[36]
14	Mauricio Carrillo-Tripp	[34]
15	Henri Casanova	[20]
16	David A. Case	[14]
17	Leo S. D. Caves	[36]
18	Jianhan Chen	[22]
19	Andrew A. Chien	[19] [20] [24]
20	Pietro Cicotti	[27]
21	Michael Crowley	[5] [18] [19] [24]
22	Qiang Cui	[36]
23	Heidi Daigler	[3]
24	Aaron R. Dinner	[36]
25	Brian N. Dominy	[3] [7]
26	Trilce Estrada	[32]
27	Michael Feig	[9] [12] [14] [16] [33] [36]
28	S. Fischer	[36]
29	David A. Flores	[32]
30	Anthony D. Fox	[5] [18]
31	Gernot Frenking	[31] [37]
32	Jiali Gao	[36]
33	Andrew S. Grimshaw	[5] [18]
34	Olgun Guvench	[13]
35	Jonathan D. Hirst	[3] [4]
36	Milan Hodoscek	[36]
37	Marty Humphrey (Marty A. Humphrey)	[5] [18]
38	Wonpil Im	[10] [14] [22] [36]
39	John E. Johnson	[28] [34]
40	Martin Karplus	[36]
41	Andre Kerstens	[32]
42	Andreas Kerstens	[26] [29]
43	Jennifer L. Knight	[35] [39] [40] [41]
44	Andrzej Kolinski	[4]
45	Derrick Kondo	[20]
46	Krzysztof Kuczera	[36]
47	Gabriel Lander	[28] [34]
48	Themis Lazaridis	[36]
49	Michael S. Lee	[9] [10] [12] [14]
50	J. Ma	[36]
51	Alexander D. MacKerell Jr.	[15] [16] [36]
52	Padmaja Natarajan	[28] [34]
53	Anand Natrajan	[5] [18]
54	L. Nilsson	[36]
55	Mark A. Olson	[33]
56	Alexey Onufriev	[14]
57	V. Ovchinnikov	[36]
58	Emanuele Paci	[36]
59	Richard W. Pastor	[36]
60	Sandeep Patel	[15] [17]
61	Robert J. Petrella	[36]
62	C. B. Post	[36]
63	Daniel J. Price	[6] [19] [23] [24] [41]
64	J. Z. Pu	[36]
65	Vijay S. Reddy	[28] [34]
66	Daniel H. Robertson	[11]
67	Benoît Roux	[36]
68	Shigeyoshi Sakaki	[31] [37]
69	Freddie R. Salsbury Jr.	[9] [12]
70	Michael Schaefer	[36]
71	Craig M. Shepherd	[28] [34]
72	Vinay Siddavanahalli	[28]
73	Michela Taufer	[19] [20] [24] [25] [26] [27] [29] [32]
74	Patricia J. Teller	[25] [32]
75	Bruce Tidor	[36]
76	Maxim Totrov	[8]
77	Richard M. Venable	[36]
78	Sangita Venkataraman	[34]
79	Michal Vieth	[3] [4] [11]
80	Nancy Wilkins-Diehr	[5] [18]
81	Y. Won	[36]
82	H. Lee Woodcock III	[36]
83	Guosheng Wu	[11]
84	X. Wu	[36]
85	W. Yang	[36]
86	Joseph D. Yesselman	[41]
87	Darrin M. York	[36]
88	William S. Young	[1] [2]
89	Richard Zamudio	[32]

Colors in the list of coauthors

Last update Sun May 27 04:04:01 2012 CET by the DBLP Team — Data released under the ODC-BY 1.0 license — See also our legal information page