Brona Brejová

Bronislava Brejová

	2011
28		Bronislava Brejová, Stefan Dobrev, Rastislav Královic, Tomás Vinar: Routing in Carrier-Based Mobile Networks. SIROCCO 2011: 222-233
27		Brona Brejová, Gad M. Landau, Tomás Vinar: Fast Computation of a String Duplication History under No-Breakpoint-Reuse - (Extended Abstract). SPIRE 2011: 144-155
26		Brona Brejová, Michal Burger, Tomás Vinar: Automated Segmentation of DNA Sequences with Complex Evolutionary Histories. WABI 2011: 1-13
25		Jakub Kovác, Brona Brejová, Tomás Vinar: A Practical Algorithm for Ancestral Rearrangement Reconstruction. WABI 2011: 163-174
	2010
24		Michal Nánási, Tomás Vinar, Brona Brejová: The Highest Expected Reward Decoding for HMMs with Application to Recombination Detection. CPM 2010: 164-176
23		Martina Visnovská, Michal Nánási, Tomás Vinar, Brona Brejová: Estimating effective DNA database size via compression. ITAT 2010: 63-70
22		Michal Nánási, Tomás Vinar, Brona Brejová: The Highest Expected Reward Decoding for HMMs with Application to Recombination Detection CoRR abs/1001.4499: (2010)
	2009
21		Tomás Vinar, Brona Brejová, Giltae Song, Adam C. Siepel: Reconstructing Histories of Complex Gene Clusters on a Phylogeny. RECOMB-CG 2009: 150-163
20		Jakub Kovác, Tomás Vinar, Brona Brejová: Predicting Gene Structures from Multiple RT-PCR Tests. WABI 2009: 181-193
19		Tomás Vinar, Brona Brejová, Giltae Song, Adam C. Siepel: Bayesian History Reconstruction of Complex Human Gene Clusters on a Phylogeny CoRR abs/0906.2635: (2009)
	2007
18		Xuefeng Cui, Tomás Vinar, Brona Brejová, Dennis Shasha, Ming Li: Homology search for genes. ISMB/ECCB (Supplement of Bioinformatics) 2007: 97-103
17		Rastislav Srámek, Brona Brejová, Tomás Vinar: On-Line Viterbi Algorithm for Analysis of Long Biological Sequences. WABI 2007: 240-251
16		Rastislav Srámek, Brona Brejová, Tomás Vinar: On-line Viterbi Algorithm and Its Relationship to Random Walks CoRR abs/0704.0062: (2007)
15		Brona Brejová, Daniel G. Brown, Tomás Vinar: The most probable annotation problem in HMMs and its application to bioinformatics. J. Comput. Syst. Sci. 73(7): 1060-1077 (2007)
	2006
14		Brona Brejová, Daniel G. Brown, Ian M. Harrower, Tomás Vinar: New Bounds for Motif Finding in Strong Instances. CPM 2006: 94-105
	2005
13		Brona Brejová, Daniel G. Brown, Ian M. Harrower, Alejandro López-Ortiz, Tomás Vinar: Sharper Upper and Lower Bounds for an Approximation Scheme for Consensus-Pattern. CPM 2005: 1-10
12		Brona Brejová, Daniel G. Brown, Ming Li, Tomás Vinar: ExonHunter: a comprehensive approach to gene finding. ISMB (Supplement of Bioinformatics) 2005: 57-65
11		Brona Brejová, Daniel G. Brown, Tomás Vinar: Vector seeds: An extension to spaced seeds. J. Comput. Syst. Sci. 70(3): 364-380 (2005)
	2004
10		Brona Brejová, Daniel G. Brown, Tomás Vinar: The Most Probable Labeling Problem in HMMs and Its Application to Bioinformatics. WABI 2004: 426-437
9		Brona Brejová, Daniel G. Brown, Tomás Vinar: Optimal Spaced Seeds for Homologous Coding Regions. J. Bioinformatics and Computational Biology 1(4): 595-610 (2004)
8		Therese C. Biedl, Brona Brejová, Erik D. Demaine, Angèle M. Hamel, Alejandro López-Ortiz, Tomás Vinar: Finding hidden independent sets in interval graphs. Theor. Comput. Sci. 310(1-3): 287-307 (2004)
	2003
7		Therese C. Biedl, Brona Brejová, Erik D. Demaine, Angèle M. Hamel, Alejandro López-Ortiz, Tomás Vinar: Finding Hidden Independent Sets in Interval Graphs. COCOON 2003: 182-191
6		Brona Brejová, Daniel G. Brown, Tomás Vinar: Optimal Spaced Seeds for Hidden Markov Models, with Application to Homologous Coding Regions. CPM 2003: 42-54
5		Brona Brejová, Daniel G. Brown, Tomás Vinar: Vector Seeds: An Extension to Spaced Seeds Allows Substantial Improvements in Sensitivity and Specifity. WABI 2003: 39-54
4		Brona Brejová, Daniel G. Brown, Tomás Vinar: Optimal DNA Signal Recognition Models with a Fixed Amount of Intrasignal Dependency. WABI 2003: 78-94
	2002
3		Brona Brejová, Tomás Vinar: A Better Method for Length Distribution Modeling in HMMs and Its Application to Gene Finding. CPM 2002: 190-202
	2001
2		Brona Brejová: Analyzing variants of Shellsort. Inf. Process. Lett. 79(5): 223-227 (2001)
	2000
1		Therese C. Biedl, Brona Brejová, Tomás Vinar: Simplifying Flow Networks. MFCS 2000: 192-201

Coauthor Index

1	Therese C. Biedl	[1] [7] [8]
2	Daniel G. Brown (Daniel Gregory Brown)	[4] [5] [6] [9] [10] [11] [12] [13] [14] [15]
3	Michal Burger	[26]
4	Xuefeng Cui	[18]
5	Erik D. Demaine	[7] [8]
6	Stefan Dobrev	[28]
7	Angèle M. Hamel	[7] [8]
8	Ian M. Harrower	[13] [14]
9	Jakub Kovác	[20] [25]
10	Rastislav Kralovic (Rastislav Královic)	[28]
11	Gad M. Landau	[27]
12	Ming Li	[12] [18]
13	Alejandro López-Ortiz (Alex López-Ortiz)	[7] [8] [13]
14	Michal Nánási	[22] [23] [24]
15	Dennis Shasha (Dennis E. Shasha)	[18]
16	Adam C. Siepel	[19] [21]
17	Giltae Song	[19] [21]
18	Rastislav Srámek	[16] [17]
19	Tomás Vinar	[1] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] [22] [23] [24] [25] [26] [27] [28]
20	Martina Visnovská	[23]

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