Rainer Breitling

	2012
27		Darren J. Creek, Andris Jankevics, Karl E. V. Burgess, Rainer Breitling, Michael P. Barrett: IDEOM: an Excel interface for analysis of LC-MS-based metabolomics data. Bioinformatics 28(7): 1048-1049 (2012)
26		Fiona Achcar, Eduard J. Kerkhoven, Barbara M. Bakker, Michael P. Barrett, Rainer Breitling: Dynamic Modelling under Uncertainty: The Case of Trypanosoma brucei Energy Metabolism. PLoS Computational Biology 8(1): (2012)
	2011
25		Rainer Breitling, Frank J. Bruggeman, Corrado Priami, Adelinde M. Uhrmacher: Formal Methods in Molecular Biology (Dagstuhl Seminar 11151). Dagstuhl Reports 1(4): 41-64 (2011)
24		Marnix H. Medema, Kai Blin, Peter Cimermancic, Victor de Jager, Piotr Zakrzewski, Michael A. Fischbach, Tilmann Weber, Eriko Takano, Rainer Breitling: antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences. Nucleic Acids Research 39(Web-Server-Issue): 339-346 (2011)
	2010
23		Corrado Priami, Rainer Breitling, David Gilbert, Monika Heiner, Adelinde M. Uhrmacher: Transactions on Computational Systems Biology XII, Special Issue on Modeling Methodologies Springer 2010
22		Bruno M. Tesson, Rainer Breitling, Ritsert C. Jansen: DiffCoEx: a simple and sensitive method to find differentially coexpressed gene modules. BMC Bioinformatics 11: 497 (2010)
21		Rainer Breitling, Robin Donaldson, David R. Gilbert, Monika Heiner: Biomodel Engineering - From Structure to Behavior. T. Comp. Sys. Biology 12: 1-12 (2010)
	2009
20		Yang Li, Morris A. Swertz, Gonzalo Vera, Jingyuan Fu, Rainer Breitling, Ritsert C. Jansen: designGG: an R-package and web tool for the optimal design of genetical genomics experiments. BMC Bioinformatics 10: (2009)
19		Simon Rogers, Richard A. Scheltema, Mark A. Girolami, Rainer Breitling: Probabilistic assignment of formulas to mass peaks in metabolomics experiments. Bioinformatics 25(4): 512-518 (2009)
	2008
18		David Gilbert, Rainer Breitling, Monika Heiner, Robin Donaldson: An Introduction to BioModel Engineering, Illustrated for Signal Transduction Pathways. Workshop on Membrane Computing 2008: 13-28
17		Fabien Jourdan, Rainer Breitling, Michael P. Barrett, David Gilbert: MetaNetter: inference and visualization of high-resolution metabolomic networks. Bioinformatics 24(1): 143-145 (2008)
16		Fangxin Hong, Rainer Breitling: A comparison of meta-analysis methods for detecting differentially expressed genes in microarray experiments. Bioinformatics 24(3): 374-382 (2008)
15		Rainer Breitling, David Gilbert, Monika Heiner, Richard J. Orton: A structured approach for the engineering of biochemical network models, illustrated for signalling pathways. Briefings in Bioinformatics 9(5): 404-421 (2008)
	2007
14		Michael Biehl, Rainer Breitling, Yang Li: Analysis of Tiling Microarray Data by Learning Vector Quantization and Relevance Learning. IDEAL 2007: 880-889
13		Ali Al-Shahib, David Gilbert, Rainer Breitling: Discriminating Microbial Species Using Protein Sequence Properties and Machine Learning. IDEAL 2007: 890-897
12		Rudi Alberts, Peter Terpstra, Menno Hardonk, Leonid V. Bystrykh, Gerald de Haan, Rainer Breitling, Jan Peter Nap, Ritsert C. Jansen: A verification protocol for the probe sequences of Affymetrix genome arrays reveals high probe accuracy for studies in mouse, human and rat. BMC Bioinformatics 8: (2007)
11		Evert-Jan Blom, Dinne W. J. Bosman, Sacha A. F. T. van Hijum, Rainer Breitling, Lars Tijsma, Remko Silvis, Jos B. T. M. Roerdink, Oscar P. Kuipers: FIVA: Functional Information Viewer and Analyzer extracting biological knowledge from transcriptome data of prokaryotes. Bioinformatics 23(9): 1161-1163 (2007)
	2006
10		Julie L. Morrison, Rainer Breitling, Desmond J. Higham, David R. Gilbert: A lock-and-key model for protein-protein interactions. Bioinformatics 22(16): 2012-2019 (2006)
9		Fangxin Hong, Rainer Breitling, Connor W. McEntee, Ben S. Wittner, Jennifer L. Nemhauser, Joanne Chory: RankProd: a bioconductor package for detecting differentially expressed genes in meta-analysis. Bioinformatics 22(22): 2825-2827 (2006)
	2005
8		Rainer Breitling, Patrick Armengaud, Anna Amtmann: Vector analysis as a fast and easy method to compare gene expression responses between different experimental backgrounds. BMC Bioinformatics 6: 181 (2005)
7		Julie L. Morrison, Rainer Breitling, Desmond J. Higham, David R. Gilbert: GeneRank: Using search engine technology for the analysis of microarray experiments. BMC Bioinformatics 6: 233 (2005)
6		Simon Rogers, Mark Girolami, Colin Campbell, Rainer Breitling: The Latent Process Decomposition of cDNA Microarray Data Sets. IEEE/ACM Trans. Comput. Biology Bioinform. 2(2): 143-156 (2005)
5		Ali Al-Shahib, Rainer Breitling, David Gilbert: Franksum: new feature selection method for protein function prediction. Int. J. Neural Syst. 15(4): 259-275 (2005)
4		Rainer Breitling, Pawel Herzyk: Rank-based Methods as a Non-parametric Alternative of the T-statistic for the Analysis of Biological Microarray Data. J. Bioinformatics and Computational Biology 3(5): 1171-1190 (2005)
	2004
3		Rainer Breitling, Anna Amtmann, Pawel Herzyk: Graph-based iterative Group Analysis enhances microarray interpretation. BMC Bioinformatics 5: 100 (2004)
2		Rainer Breitling, Anna Amtmann, Pawel Herzyk: Iterative Group Analysis (iGA): A simple tool to enhance sensitivity and facilitate interpretation of microarray experiments. BMC Bioinformatics 5: 34 (2004)
1		Mark Girolami, Rainer Breitling: Biologically valid linear factor models of gene expression. Bioinformatics 20(17): 3021-3033 (2004)

Coauthor Index

1	Fiona Achcar	[26]
2	Ali Al-Shahib	[5] [13]
3	Rudi Alberts	[12]
4	Anna Amtmann	[2] [3] [8]
5	Patrick Armengaud	[8]
6	Barbara M. Bakker	[26]
7	Michael P. Barrett	[17] [26] [27]
8	Michael Biehl	[14]
9	Kai Blin	[24]
10	Evert-Jan Blom	[11]
11	Dinne W. J. Bosman	[11]
12	Frank J. Bruggeman	[25]
13	Karl E. V. Burgess	[27]
14	Leonid V. Bystrykh	[12]
15	Colin Campbell	[6]
16	Joanne Chory	[9]
17	Peter Cimermancic	[24]
18	Darren J. Creek	[27]
19	Robin Donaldson	[18] [21]
20	Michael A. Fischbach	[24]
21	Jingyuan Fu	[20]
22	David Gilbert (David R. Gilbert)	[5] [7] [10] [13] [15] [17] [18] [21] [23]
23	Mark A. Girolami (Mark Girolami)	[1] [6] [19]
24	Gerald de Haan	[12]
25	Menno Hardonk	[12]
26	Monika Heiner	[15] [18] [21] [23]
27	Pawel Herzyk	[2] [3] [4]
28	Desmond J. Higham	[7] [10]
29	Sacha A. F. T. van Hijum	[11]
30	Fangxin Hong	[9] [16]
31	Victor de Jager	[24]
32	Andris Jankevics	[27]
33	Ritsert C. Jansen	[12] [20] [22]
34	Fabien Jourdan	[17]
35	Eduard J. Kerkhoven	[26]
36	Oscar P. Kuipers	[11]
37	Yang Li	[14] [20]
38	Connor W. McEntee	[9]
39	Marnix H. Medema	[24]
40	Julie L. Morrison	[7] [10]
41	Jan Peter Nap	[12]
42	Jennifer L. Nemhauser	[9]
43	Richard J. Orton	[15]
44	Corrado Priami	[23] [25]
45	J. B. T. M. Roerdink (Jos B. T. M. Roerdink)	[11]
46	Simon Rogers	[6] [19]
47	Richard A. Scheltema	[19]
48	Remko Silvis	[11]
49	Morris A. Swertz	[20]
50	Eriko Takano	[24]
51	Peter Terpstra	[12]
52	Bruno M. Tesson	[22]
53	Lars Tijsma	[11]
54	Adelinde M. Uhrmacher (Adelinde Uhrmacher)	[23] [25]
55	Gonzalo Vera	[20]
56	Tilmann Weber	[24]
57	Ben S. Wittner	[9]
58	Piotr Zakrzewski	[24]

Colors in the list of coauthors

Last update Sun May 27 04:04:01 2012 CET by the DBLP Team — Data released under the ODC-BY 1.0 license — See also our legal information page