Mark Borodovsky

	2012
27		Yang Li, Hong-Mei Li, Paul Burns, Mark Borodovsky, Gene E. Robinson, Jian Ma: TrueSight: Self-training Algorithm for Splice Junction Detection Using RNA-seq. RECOMB 2012: 163-164
	2011
26		Mark Borodovsky, Teresa M. Przytycka, Sanguthevar Rajasekaran, Alexander Zelikovsky: Guest Editors' Introduction to the Special Section on Bioinformatics Research and Applications. IEEE/ACM Trans. Comput. Biology Bioinform. 8(4): 865-866 (2011)
	2010
25		Aidong Zhang, Mark Borodovsky, Gultekin Özsoyoglu, Armin R. Mikler: Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology, BCB 2010, Niagara Falls, NY, USA, August 2-4, 2010 ACM 2010
24		Mark Borodovsky, Johann Peter Gogarten, Teresa M. Przytycka, Sanguthevar Rajasekaran: Bioinformatics Research and Applications, 6th International Symposium, ISBRA 2010, Storrs, CT, USA, May 23-26, 2010. Proceedings Springer 2010
23		Jeffrey Martin, Wenhan Zhu, Karla D. Passalacqua, Nicholas H. Bergman, Mark Borodovsky: Bacillus anthracis genome organization in light of whole transcriptome sequencing. BMC Bioinformatics 11(S-3): 10 (2010)
22		Ivan Antonov, Mark Borodovsky: Genetack: frameshift Identification in protein-Coding Sequences by the Viterbi Algorithm. J. Bioinformatics and Computational Biology 8(3): 535-551 (2010)
	2009
21		Jeffrey Martin, Wenhan Zhu, Nicholas H. Bergman, Mark Borodovsky: Assessment of Gene Annotation Accuracy by Inferring Transcripts from RNA-Seq. BIBM 2009: 54-59
20		Andrey Kislyuk, Alexandre Lomsadze, Alla L. Lapidus, Mark Borodovsky: Frameshift detection in prokaryotic genomic sequences. IJBRA 5(4): 458-477 (2009)
	2007
19		Mark Borodovsky: Decoding Novel Genomes: From Microbiomes to the Eukaryota. BIBE 2007: 3
18		Mark Borodovsky: Invited Talk: Ab Initio Gene Finding Engines: What Is Under the Hood. ISBRA 2007: 577
	2006
17		Zafer Aydin, Yucel Altunbasak, Mark Borodovsky: Protein secondary structure prediction for a single-sequence using hidden semi-Markov models. BMC Bioinformatics 7: 178 (2006)
16		Alexander Yu. Mitrophanov, Mark Borodovsky: Statistical significance in biological sequence analysis. Briefings in Bioinformatics 7(1): 2-24 (2006)
15		Seoung Bum Kim, Kwok-Leung Tsui, Mark Borodovsky: Multiple testing in large-scale contingency tables: inferring patterns of pair-wise amino acid association in beta-sheets. IJBRA 2(2): 193-217 (2006)
14		Svetlana Ekisheva, Mark Borodovsky: Probabilistic models for biological sequences: selection and Maximum Likelihood estimation. IJBRA 2(3): 305-324 (2006)
	2005
13		Jin Hong, Dong Hyun Jeong, Christopher D. Shaw, William Ribarsky, Mark Borodovsky, Chang Geun Song: GVis: A Scalable Visualization Framework for Genomic Data. EuroVis 2005: 191-198
12		Mark Borodovsky, Andrey Rzhetsky, Dmitrij Frishman: The Fifth Georgia Tech - Oak Ridge National Laboratory International Conference in Bioinformatics: in silico Biology, Computational Genomics and Evolutionary Biology. Bioinformatics 21(S3): 1 (2005)
11		John Besemer, Mark Borodovsky: GeneMark: web software for gene finding in prokaryotes, eukaryotes and viruses. Nucleic Acids Research 33(Web-Server-Issue): 451-454 (2005)
	2004
10		Rajeev K. Azad, Mark Borodovsky: Effects of choice of DNA sequence model structure on gene identification accuracy. Bioinformatics 20(7): 993-1005 (2004)
9		Rajeev K. Azad, Mark Borodovsky: Probabilistic methods of identifying genes in prokaryotic genomes: Connections to the HMM theory. Briefings in Bioinformatics 5(2): 118-130 (2004)
	2001
8		Mark Borodovsky, Eugene V. Koonin, Chris Burge, James W. Fickett, John Logsdon, Andrej Sali, Gary D. Stormo, Igor B. Zhulin: The Third Georgia Tech-Emory International Conference on Bioinformatics: In Silico Biology; Bioinformatics After Human Genome (November 15-18, 2001, Atlanta, Georgia, USA). Bioinformatics 17(10): 859-861 (2001)
	1999
7		Chris Burge, Andrej Sali, Mark Borodovsky: The Second Georgia Tech International Conference on Bioinformatics: Sequence, Structure and Function (November 11-14, 1999, Atlanta, Georgia, USA). Bioinformatics 15(11): 865-866 (1999)
6		Anton M. Shmatkov, Arik A. Melikyan, Felix L. Chernousko, Mark Borodovsky: Finding prokaryotic genes by the `frame-by-frame' algorithm: targeting gene starts and overlapping genes. Bioinformatics 15(11): 874-886 (1999)
	1996
5		James D. McIninch, William S. Hayes, Mark Borodovsky: Applications of GeneMark in Multispecies Environments. ISMB 1996: 165-175
4		Jürgen Kleffe, Klaus Hermann, Mark Borodovsky: Statistical Analysis of Genemark Performance by Cross-validation. Computers & Chemistry 20(1): 123-133 (1996)
	1994
3		Mark Borodovsky, Anatoly Peresetsky: Deriving Non-homogeneous DNA Markov Chain Models by Cluster Analysis Algorithm Minimizing Multiple Alignment Entropy. Computers & Chemistry 18(3): 259-267 (1994)
	1993
2		Mark Borodovsky, James D. McIninch: GENMARK: Parallel Gene Recognition for Both DNA Strands. Computers & Chemistry 17(2): 123-133 (1993)
	1992
1		Jürgen Kleffe, Mark Borodovsky: First and second moment of counts of words in random texts generated by Markov chains. Computer Applications in the Biosciences 8(5): 433-441 (1992)

Coauthor Index

1	Yucel Altunbasak	[17]
2	Ivan Antonov	[22]
3	Zafer Aydin	[17]
4	Rajeev K. Azad	[9] [10]
5	Nicholas H. Bergman	[21] [23]
6	John Besemer	[11]
7	Chris Burge	[7] [8]
8	Paul Burns	[27]
9	Felix L. Chernousko	[6]
10	Svetlana Ekisheva	[14]
11	James W. Fickett	[8]
12	Dmitrij Frishman	[12]
13	J. Peter Gogarten (Johann Peter Gogarten)	[24]
14	William S. Hayes	[5]
15	Klaus Hermann	[4]
16	Jin Hong	[13]
17	Dong Hyun Jeong	[13]
18	Seoung Bum Kim	[15]
19	Andrey Kislyuk	[20]
20	Jürgen Kleffe	[1] [4]
21	Eugene V. Koonin	[8]
22	Alla L. Lapidus	[20]
23	Hong-Mei Li	[27]
24	Yang Li	[27]
25	John Logsdon	[8]
26	Alexandre Lomsadze	[20]
27	Jian Ma	[27]
28	Jeffrey Martin	[21] [23]
29	James D. McIninch	[2] [5]
30	Arik A. Melikyan	[6]
31	Armin R. Mikler	[25]
32	Alexander Yu. Mitrophanov	[16]
33	Gultekin Özsoyoglu	[25]
34	Karla D. Passalacqua	[23]
35	Anatoly Peresetsky	[3]
36	Teresa M. Przytycka	[24] [26]
37	Sanguthevar Rajasekaran	[24] [26]
38	William Ribarsky	[13]
39	Gene E. Robinson	[27]
40	Andrey Rzhetsky	[12]
41	Andrej Sali	[7] [8]
42	Chris Shaw (Christopher D. Shaw)	[13]
43	Anton M. Shmatkov	[6]
44	Chang Geun Song	[13]
45	Gary D. Stormo	[8]
46	Kwok-Leung Tsui	[15]
47	Alexander Zelikovsky	[26]
48	Aidong Zhang	[25]
49	Wenhan Zhu	[21] [23]
50	Igor B. Zhulin	[8]

Colors in the list of coauthors

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