 | 2011 |
| 10 |  | Andrew J. Bordner,
Barry Zorman,
Ruben Abagyan:
Efficient molecular mechanics simulations of the folding, orientation, and assembly of peptides in lipid bilayers using an implicit atomic solvation model.
Journal of Computer-Aided Molecular Design 25(10): 895-911 (2011) |
| 2010 |
| 9 |  | Xiuping Tao,
Andrew J. Bordner,
Thomas C. Schulthess,
Andrey A. Gorin:
Kernelling Method for Identifying Near-Native Protein Decoy Structures.
BIOCOMP 2010: 225-228 |
| 8 |  | Andrew J. Bordner:
Orientation-dependent backbone-only residue pair scoring functions for fixed backbone protein design.
BMC Bioinformatics 11: 192 (2010) |
| 7 |  | Andrew J. Bordner,
Hans D. Mittelmann:
Prediction of the binding affinities of peptides to class II MHC using a regularized thermodynamic model.
BMC Bioinformatics 11: 41 (2010) |
| 6 |  | Andrew J. Bordner,
Hans D. Mittelmann:
MultiRTA: A simple yet reliable method for predicting peptide binding affinities for multiple class II MHC allotypes.
BMC Bioinformatics 11: 482 (2010) |
| 2009 |
| 5 |  | Andrew J. Bordner:
Predicting protein-protein binding sites in membrane proteins.
BMC Bioinformatics 10: 312 (2009) |
| 2008 |
| 4 |  | Andrew J. Bordner,
Andrey A. Gorin:
Comprehensive inventory of protein complexes in the Protein Data Bank from consistent classification of interfaces.
BMC Bioinformatics 9: (2008) |
| 3 |  | Andrew J. Bordner:
Predicting small ligand binding sites in proteins using backbone structure.
Bioinformatics 24(24): 2865-2871 (2008) |
| 2005 |
| 2 |  | Andrew J. Bordner,
Ruben Abagyan:
REVCOM: a robust Bayesian method for evolutionary rate estimation.
Bioinformatics 21(10): 2315-2321 (2005) |
| 2003 |
| 1 |  | Andrew J. Bordner,
G. A. Huber:
Boundary element solution of the linear Poisson-Boltzmann equation and a multipole method for the rapid calculation of forces on macromolecules in solution.
Journal of Computational Chemistry 24(3): 353-367 (2003) |