Mathieu Blanchette

	2011
42		Glenn Hickey, Mathieu Blanchette: A Probabilistic Model for Sequence Alignment with Context-Sensitive Indels. RECOMB 2011: 85-103
41		Mathieu Rousseau, James Fraser, Maria A. Ferraiuolo, Josee Dostie, Mathieu Blanchette: Three-dimensional modeling of chromatin structure from interaction frequency data using Markov chain Monte Carlo sampling. BMC Bioinformatics 12: 414 (2011)
40		Javad Sadri, Abdoulaye Baniré Diallo, Mathieu Blanchette: Predicting site-specific human selective pressure using evolutionary signatures. Bioinformatics [ISMB/ECCB] 27(13): 266-274 (2011)
39		Glenn Hickey, Mathieu Blanchette, Paz Carmi, Anil Maheshwari, Norbert Zeh: An Approximation Algorithm for the Noah's Ark Problem with Random Feature Loss. IEEE/ACM Trans. Comput. Biology Bioinform. 8(2): 551-556 (2011)
	2010
38		Glenn Hickey, Mathieu Blanchette: A Practical Algorithm for Estimation of the Maximum Likelihood Ancestral Reconstruction Error. Pacific Symposium on Biocomputing 2010: 31-42
37		Emmanuel Mongin, Ken Dewar, Mathieu Blanchette: Mapping Association between Long-Range Cis-Regulatory Regions and Their Target Genes Using Comparative Genomics. RECOMB-CG 2010: 216-227
36		Denis Bertrand, Yves Gagnon, Mathieu Blanchette, Nadia El-Mabrouk: Reconstruction of Ancestral Genome Subject to Whole Genome Duplication, Speciation, Rearrangement and Loss. WABI 2010: 78-89
35		Abdoulaye Baniré Diallo, Vladimir Makarenkov, Mathieu Blanchette: Ancestors 1.0: a web server for ancestral sequence reconstruction. Bioinformatics 26(1): 130-131 (2010)
34		James R. Wagner, Bing Ge, Dmitry Pokholok, Kevin L. Gunderson, Tomi Pastinen, Mathieu Blanchette: Computational Analysis of Whole-Genome Differential Allelic Expression Data in Human. PLoS Computational Biology 6(7): (2010)
	2009
33		Mathieu Lavallée-Adam, Benoit Coulombe, Mathieu Blanchette: Detection of Locally Over-Represented GO Terms in Protein-Protein Interaction Networks. RECOMB 2009: 302-320
	2008
32		Dunarel Badescu, Abdoulaye Baniré Diallo, Mathieu Blanchette, Vladimir Makarenkov: An Evolutionary Study of the Human Papillomavirus Genomes. RECOMB-CG 2008: 128-142
31		Denis Bertrand, Mathieu Blanchette, Nadia El-Mabrouk: A Phylogenetic Approach to Genetic Map Refinement. RECOMB-CG 2008: 198-210
30		Mathieu Blanchette: Substring Parsimony. Encyclopedia of Algorithms 2008
29		Martin Smith, Mathieu Blanchette, Barbara Papadopoulou: Improving the prediction of mRNA extremities in the parasitic protozoan Leishmania. BMC Bioinformatics 9: (2008)
28		François Fauteux, Mathieu Blanchette, Martina V. Stromvik: Seeder: discriminative seeding DNA motif discovery. Bioinformatics 24(20): 2303-2307 (2008)
	2007
27		Xiaoyu Chen, Mathieu Blanchette: Prediction of tissue-specific cis-regulatory modules using Bayesian networks and regression trees. BMC Bioinformatics 8(S-10): (2007)
26		Guillaume Blin, Eric Blais, Danny Hermelin, Pierre Guillon, Mathieu Blanchette, Nadia El-Mabrouk: Gene Maps Linearization Using Genomic Rearrangement Distances. Journal of Computational Biology 14(4): 394-407 (2007)
25		Abdoulaye Baniré Diallo, Vladimir Makarenkov, Mathieu Blanchette: Exact and Heuristic Algorithms for the Indel Maximum Likelihood Problem. Journal of Computational Biology 14(4): 446-461 (2007)
24		Vincent Ferretti, Christian Poitras, Dominique Bergeron, Benoit Coulombe, François Robert, Mathieu Blanchette: PReMod: a database of genome-wide mammalian cis-regulatory module predictions. Nucleic Acids Research 35(Database-Issue): 122-126 (2007)
	2006
23		Eric Blais, Mathieu Blanchette: Common Substrings in Random Strings. CPM 2006: 129-140
22		Éric Gaul, Mathieu Blanchette: Ordering Partially Assembled Genomes Using Gene Arrangements. Comparative Genomics 2006: 113-128
21		Abdoulaye Baniré Diallo, Vladimir Makarenkov, Mathieu Blanchette: Finding Maximum Likelihood Indel Scenarios. Comparative Genomics 2006: 171-185
20		Guillaume Blin, Eric Blais, Pierre Guillon, Mathieu Blanchette, Nadia El-Mabrouk: Inferring Gene Orders from Gene Maps Using the Breakpoint Distance. Comparative Genomics 2006: 99-112
19		Leonid Chindelevitch, Zhentao Li, Eric Blais, Mathieu Blanchette: On the Inference of Parsimonious Indel Evolutionary Scenarios. J. Bioinformatics and Computational Biology 4(3): 721-744 (2006)
18		Fei Fang, Mathieu Blanchette: FootPrinter3: phylogenetic footprinting in partially alignable sequences. Nucleic Acids Research 34(Web-Server-Issue): 617-620 (2006)
	2004
17		Gill Bejerano, David Haussler, Mathieu Blanchette: Into the heart of darkness: large-scale clustering of human non-coding DNA. ISMB/ECCB (Supplement of Bioinformatics) 2004: 40-48
16		Amol Prakash, Mathieu Blanchette, Saurabh Sinha, Martin Tompa: Motif Discovery in Heterogeneous Sequence Data. Pacific Symposium on Biocomputing 2004: 348-359
15		Anne Bergeron, Mathieu Blanchette, Annie Chateau, Cedric Chauve: Reconstructing Ancestral Gene Orders Using Conserved Intervals. WABI 2004: 14-25
14		Saurabh Sinha, Mathieu Blanchette, Martin Tompa: PhyME: A probabilistic algorithm for finding motifs in sets of orthologous sequences. BMC Bioinformatics 5: 170 (2004)
	2003
13		Mathieu Blanchette, Samson Kwong, Martin Tompa: An Empirical Comparison of Tools for Phylogenetic Footprinting. BIBE 2003: 69-78
12		Mathieu Blanchette: A comparative analysis method for detecting binding sites in coding regions. RECOMB 2003: 57-66
11		Mathieu Blanchette, Martin Tompa: FootPrinter: a program designed for phylogenetic footprinting. Nucleic Acids Research 31(13): 3840-3842 (2003)
	2002
10		Mathieu Blanchette, Benno Schwikowski, Martin Tompa: Algorithms for Phylogenetic Footprinting. Journal of Computational Biology 9(2): 211-223 (2002)
	2001
9		Mathieu Blanchette, Saurabh Sinha: Separating real motifs from their artifacts. ISMB (Supplement of Bioinformatics) 2001: 30-38
8		Mathieu Blanchette: Evolutionary Puzzles: An Introduction to Genome Rearrangement. International Conference on Computational Science (2) 2001: 1003-1011
7		Mathieu Blanchette: Algorithms for phylogenetic footprinting. RECOMB 2001: 49-58
	2000
6		Mathieu Blanchette, Benno Schwikowski, Martin Tompa: An Exact Algorithm to Identify Motifs in Orthologous Sequences from Multiple Species. ISMB 2000: 37-45
	1999
5		David Sankoff, Mathieu Blanchette: Probability models for genome rearrangement and linear invariants for phylogenetic inference. RECOMB 1999: 302-309
4		David Sankoff, Mathieu Blanchette: Phylogenetic Invariants for Genome Rearrangements. Journal of Computational Biology 6(3/4): (1999)
	1998
3		David Sankoff, Mathieu Blanchette: Multiple genome rearrangements. RECOMB 1998: 243-247
2		David Sankoff, Mathieu Blanchette: Multiple Genome Rearrangement and Breakpoint Phylogeny. Journal of Computational Biology 5(3): 555-570 (1998)
	1997
1		David Sankoff, Mathieu Blanchette: The Median Problem for Breakpoints in Comparative Genomics. COCOON 1997: 251-264

Coauthor Index

1	Dunarel Badescu	[32]
2	Gill Bejerano	[17]
3	Anne Bergeron	[15]
4	Dominique Bergeron	[24]
5	Denis Bertrand	[31] [36]
6	Eric Blais	[19] [20] [23] [26]
7	Guillaume Blin	[20] [26]
8	Paz Carmi	[39]
9	Annie Chateau	[15]
10	Cedric Chauve	[15]
11	Xiaoyu Chen	[27]
12	Leonid Chindelevitch	[19]
13	Benoit Coulombe	[24] [33]
14	Ken Dewar	[37]
15	Abdoulaye Baniré Diallo	[21] [25] [32] [35] [40]
16	Josee Dostie	[41]
17	Nadia El-Mabrouk	[20] [26] [31] [36]
18	Fei Fang	[18]
19	François Fauteux	[28]
20	Maria A. Ferraiuolo	[41]
21	Vincent Ferretti	[24]
22	James Fraser	[41]
23	Yves Gagnon	[36]
24	Éric Gaul	[22]
25	Bing Ge	[34]
26	Pierre Guillon	[20] [26]
27	Kevin L. Gunderson	[34]
28	David Haussler	[17]
29	Danny Hermelin	[26]
30	Glenn Hickey	[38] [39] [42]
31	Samson Kwong	[13]
32	Mathieu Lavallée-Adam	[33]
33	Zhentao Li	[19]
34	Anil Maheshwari	[39]
35	Vladimir Makarenkov	[21] [25] [32] [35]
36	Emmanuel Mongin	[37]
37	Barbara Papadopoulou	[29]
38	Tomi Pastinen	[34]
39	Christian Poitras	[24]
40	Dmitry Pokholok	[34]
41	Amol Prakash	[16]
42	François Robert	[24]
43	Mathieu Rousseau	[41]
44	Javad Sadri	[40]
45	David Sankoff	[1] [2] [3] [4] [5]
46	Benno Schwikowski	[6] [10]
47	Saurabh Sinha	[9] [14] [16]
48	Martin Smith	[29]
49	Martina V. Stromvik	[28]
50	Martin Tompa	[6] [10] [11] [13] [14] [16]
51	James R. Wagner	[34]
52	Norbert Zeh	[39]

Colors in the list of coauthors

Last update Sun May 27 04:04:01 2012 CET by the DBLP Team — Data released under the ODC-BY 1.0 license — See also our legal information page