Matthew Berriman

	2012
14		Tim Carver, Simon R. Harris, Matthew Berriman, Julian Parkhill, Jacqueline A. McQuillan: Artemis: an integrated platform for visualization and analysis of high-throughput sequence-based experimental data. Bioinformatics 28(4): 464-469 (2012)
13		Karen Yook, Todd W. Harris, Tamberlyn Bieri, Abigail Cabunoc, Juancarlos Chan, Wen J. Chen, Paul Davis, Norie De La Cruz, Adrian Duong, Ruihua Fang, Uma Ganesan, Christian Grove, Kevin L. Howe, Snehalata Kadam, Ranjana Kishore, Raymond Lee, Yuling Li, Hans-Michael Müller, Cecilia Nakamura, Bill Nash, Philip Ozersky, Michael Paulini, Daniela Raciti, Arun Rangarajan, Gary Schindelman, Xiaoqi Shi, Erich M. Schwarz, Mary Ann Tuli, Kimberly Van Auken, Daniel Wang, Xiaodong Wang, Gary Williams, Jonathan Hodgkin, Matthew Berriman, Richard Durbin, Paul Kersey, John Spieth, Lincoln Stein, Paul W. Sternberg: WormBase 2012: more genomes, more data, new website. Nucleic Acids Research 40(Database-Issue): 735-741 (2012)
12		Flora J. Logan-Klumpler, Nishadi De Silva, Ulrike Böhme, Matthew B. Rogers, Giles Velarde, Jacqueline A. McQuillan, Tim Carver, Martin Aslett, Christian Olsen, Sandhya Subramanian, Isabelle Phan, Carol Farris, Siddhartha Mitra, Gowthaman Ramasamy, Haiming Wang, Adrian Tivey, Andrew Jackson, Robin Houston, Julian Parkhill, Matthew Holden, Omar S. Harb, Brian P. Brunk, Peter J. Myler, David S. Roos, Mark Carrington, Deborah F. Smith, Christiane Hertz-Fowler, Matthew Berriman: GeneDB - an annotation database for pathogens. Nucleic Acids Research 40(Database-Issue): 98-108 (2012)
	2010
11		Thomas D. Otto, Mandy Sanders, Matthew Berriman, Chris Newbold: Iterative Correction of Reference Nucleotides (iCORN) using second generation sequencing technology. Bioinformatics 26(14): 1704-1707 (2010)
10		Tim Carver, Ulrike Böhme, Thomas D. Otto, Julian Parkhill, Matthew Berriman: BamView: viewing mapped read alignment data in the context of the reference sequence. Bioinformatics 26(5): 676-677 (2010)
9		Martin Aslett, Cristina Aurrecoechea, Matthew Berriman, John Brestelli, Brian P. Brunk, Mark Carrington, Daniel P. Depledge, Steve Fischer, Bindu Gajria, Xin Gao, Malcolm J. Gardner, Alan Gingle, Gregory R. Grant, Omar S. Harb, Mark Heiges, Christiane Hertz-Fowler, Robin Houston, Frank Innamorato, John Iodice, Jessica C. Kissinger, Eileen Kraemer, Wei Li, Flora J. Logan, John A. Miller, Siddhartha Mitra, Peter J. Myler, Vishal Nayak, Cary Pennington, Isabelle Phan, Deborah F. Pinney, Gowthaman Ramasamy, Matthew B. Rogers, David S. Roos, Chris Ross, Dhileep Sivam, Deborah F. Smith, Ganesh Srinivasamoorthy, Christian J. Stoeckert Jr., Sandhya Subramanian, Ryan Thibodeau, Adrian Tivey, Charles Treatman, Giles Velarde, Haiming Wang: TriTrypDB: a functional genomic resource for the Trypanosomatidae. Nucleic Acids Research 38(Database-Issue): 457-462 (2010)
	2009
8		Tim J. Carver, Nick Thomson, Alan J. Bleasby, Matthew Berriman, Julian Parkhill: DNAPlotter: circular and linear interactive genome visualization. Bioinformatics 25(1): 119-120 (2009)
7		Samuel Assefa, Thomas M. Keane, Thomas D. Otto, Chris Newbold, Matthew Berriman: ABACAS: algorithm-based automatic contiguation of assembled sequences. Bioinformatics 25(15): 1968-1969 (2009)
	2008
6		Bridget Chukualim, Nick Peters, Christiane Hertz-Fowler, Matthew Berriman: TrypanoCyc - a metabolic pathway database for Trypanosoma brucei. BMC Bioinformatics 9(S-10): (2008)
5		Tim J. Carver, Matthew Berriman, Adrian Tivey, Chinmay Patel, Ulrike Böhme, Bart Barrell, Julian Parkhill, Marie-Adèle Rajandream: Artemis and ACT: viewing, annotating and comparing sequences stored in a relational database. Bioinformatics 24(23): 2672-2676 (2008)
	2005
4		Tim J. Carver, Kim Rutherford, Matthew Berriman, Marie-Adèle Rajandream, Bart Barrell, Julian Parkhill: ACT: the Artemis comparison tool. Bioinformatics 21(16): 3422-3423 (2005)
	2004
3		David M. A. Martin, Matthew Berriman, Geoffrey J. Barton: GOtcha: a new method for prediction of protein function assessed by the annotation of seven genomes. BMC Bioinformatics 5: 178 (2004)
2		Christiane Hertz-Fowler, Chris S. Peacock, Valerie Wood, Martin Aslett, Arnaud Kerhornou, Paul Mooney, Adrian Tivey, Matthew Berriman, Neil Hall, Kim Rutherford, Julian Parkhill, Alasdair C. Ivens, Marie-Adèle Rajandream, Bart Barrell: GeneDB: a resource for prokaryotic and eukaryotic organisms. Nucleic Acids Research 32(Database-Issue): 339-343 (2004)
	2003
1		Matthew Berriman, Kim Rutherford: Viewing and Annotating Sequence Data with Artemis. Briefings in Bioinformatics 4(2): 124 (2003)

Coauthor Index

1	Martin Aslett	[2] [9] [12]
2	Samuel Assefa	[7]
3	Kimberly Van Auken	[13]
4	Cristina Aurrecoechea	[9]
5	Bart Barrell	[2] [4] [5]
6	Geoffrey J. Barton	[3]
7	Tamberlyn Bieri	[13]
8	Alan J. Bleasby	[8]
9	Ulrike Böhme	[5] [10] [12]
10	John Brestelli	[9]
11	Brian P. Brunk	[9] [12]
12	Abigail Cabunoc	[13]
13	Mark Carrington	[9] [12]
14	Tim J. Carver (Tim Carver)	[4] [5] [8] [10] [12] [14]
15	Juancarlos Chan	[13]
16	Wen J. Chen	[13]
17	Bridget Chukualim	[6]
18	Norie De La Cruz	[13]
19	Paul Davis	[13]
20	Daniel P. Depledge	[9]
21	Adrian Duong	[13]
22	Richard Durbin	[13]
23	Ruihua Fang	[13]
24	Carol Farris	[12]
25	Steve Fischer	[9]
26	Bindu Gajria	[9]
27	Uma Ganesan	[13]
28	Xin Gao	[9]
29	Malcolm J. Gardner	[9]
30	Alan Gingle	[9]
31	Gregory R. Grant	[9]
32	Christian Grove	[13]
33	Neil Hall	[2]
34	Omar S. Harb	[9] [12]
35	Simon R. Harris	[14]
36	Todd W. Harris	[13]
37	Mark Heiges	[9]
38	Christiane Hertz-Fowler	[2] [6] [9] [12]
39	Jonathan Hodgkin	[13]
40	Matthew Holden	[12]
41	Robin Houston	[9] [12]
42	Kevin L. Howe	[13]
43	Frank Innamorato	[9]
44	John Iodice	[9]
45	Alasdair C. Ivens	[2]
46	Andrew Jackson	[12]
47	Snehalata Kadam	[13]
48	Thomas M. Keane	[7]
49	Arnaud Kerhornou	[2]
50	Paul Kersey	[13]
51	Ranjana Kishore	[13]
52	Jessica C. Kissinger	[9]
53	Eileen Kraemer	[9]
54	Raymond Lee	[13]
55	Wei Li	[9]
56	Yuling Li	[13]
57	Flora J. Logan-Klumpler (Flora J. Logan)	[9] [12]
58	David M. A. Martin	[3]
59	Jacqueline A. McQuillan	[12] [14]
60	John A. Miller	[9]
61	Siddhartha Mitra	[9] [12]
62	Paul Mooney	[2]
63	Hans-Michael Müller	[13]
64	Peter J. Myler	[9] [12]
65	Cecilia Nakamura	[13]
66	Bill Nash	[13]
67	Vishal Nayak	[9]
68	Chris Newbold	[7] [11]
69	Christian Olsen	[12]
70	Thomas D. Otto	[7] [10] [11]
71	Philip Ozersky	[13]
72	Julian Parkhill	[2] [4] [5] [8] [10] [12] [14]
73	Chinmay Patel	[5]
74	Michael Paulini	[13]
75	Chris S. Peacock	[2]
76	Cary Pennington	[9]
77	Nick Peters	[6]
78	Isabelle Phan (I. Q. H. Phan)	[9] [12]
79	Deborah F. Pinney	[9]
80	Daniela Raciti	[13]
81	Marie-Adèle Rajandream	[2] [4] [5]
82	Gowthaman Ramasamy	[9] [12]
83	Arun Rangarajan	[13]
84	Matthew B. Rogers	[9] [12]
85	David S. Roos	[9] [12]
86	Chris Ross	[9]
87	Kim Rutherford	[1] [2] [4]
88	Mandy Sanders	[11]
89	Gary Schindelman	[13]
90	Erich M. Schwarz	[13]
91	Xiaoqi Shi	[13]
92	Nishadi De Silva	[12]
93	Dhileep Sivam	[9]
94	Deborah F. Smith	[9] [12]
95	John Spieth	[13]
96	Ganesh Srinivasamoorthy	[9]
97	Lincoln Stein (Lincoln D. Stein)	[13]
98	Paul W. Sternberg	[13]
99	Christian J. Stoeckert Jr.	[9]
100	Sandhya Subramanian	[9] [12]
101	Ryan Thibodeau	[9]
102	Nick Thomson	[8]
103	Adrian Tivey	[2] [5] [9] [12]
104	Charles Treatman	[9]
105	Mary Ann Tuli	[13]
106	Giles Velarde	[9] [12]
107	Daniel Wang	[13]
108	Haiming Wang	[9] [12]
109	Xiaodong Wang	[13]
110	Gary Williams	[13]
111	Valerie Wood	[2]
112	Karen Yook	[13]

Colors in the list of coauthors

Last update Sun May 27 04:04:01 2012 CET by the DBLP Team — Data released under the ODC-BY 1.0 license — See also our legal information page