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| 2011 | ||
|---|---|---|
| 21 | Andreas Leha, Tim Beißbarth, Klaus Jung: Sequential Interim Analyses of Survival Data in DNA Microarray Experiments. BMC Bioinformatics 12: 127 (2011) | |
| 20 | Klaus Jung, Tim Friede, Tim Beißbarth: Reporting FDR analogous confidence intervals for the log fold change of differentially expressed genes. BMC Bioinformatics 12: 288 (2011) | |
| 19 | Christian Bender, Silvia vd Heyde, Frauke Henjes, Stefan Wiemann, Ulrike Korf, Tim Beißbarth: Inferring signalling networks from longitudinal data using sampling based approaches in the R-package 'ddepn'. BMC Bioinformatics 12: 291 (2011) | |
| 18 | Klaus Jung, Benjamin Becker, Edgar Brunner, Tim Beißbarth: Comparison of global tests for functional gene sets in two-group designs and selection of potentially effect-causing genes. Bioinformatics 27(10): 1377-1383 (2011) | |
| 17 | Marc Johannes, Holger Fröhlich, Holger Sültmann, Tim Beißbarth: pathClass: an R-package for integration of pathway knowledge into support vector machines for biomarker discovery. Bioinformatics 27(10): 1442-1443 (2011) | |
| 2010 | ||
| 16 | Marc Johannes, Jan C. Brase, Holger Fröhlich, Stephan Gade, Mathias C. Gehrmann, Maria Fälth, Holger Sültmann, Tim Beißbarth: Integration of pathway knowledge into a reweighted recursive feature elimination approach for risk stratification of cancer patients. Bioinformatics 26(17): 2136-2144 (2010) | |
| 15 | Heiko A. Mannsperger, Stephan Gade, Frauke Henjes, Tim Beißbarth, Ulrike Korf: RPPanalyzer: Analysis of reverse-phase protein array data. Bioinformatics 26(17): 2202-2203 (2010) | |
| 14 | Christian Bender, Frauke Henjes, Holger Fröhlich, Stefan Wiemann, Ulrike Korf, Tim Beißbarth: Dynamic deterministic effects propagation networks: learning signalling pathways from longitudinal protein array data. Bioinformatics 26(18): (2010) | |
| 13 | Anika Jöcker, Johanna Sonntag, Frauke Henjes, Frank Götschel, Achim Tresch, Tim Beißbarth, Stefan Wiemann, Ulrike Korf: QuantProReloaded: quantitative analysis of microspot immunoassays. Bioinformatics 26(19): 2480-2481 (2010) | |
| 12 | Klaus Jung, Marian Grade, Jochen Gaedcke, Peter Jo, Lennart Opitz, Heinz Becker, B. Michael Ghadimi, Tim Beißbarth: A new sensitivity-preferred strategy to build prediction rules for therapy response of cancer patients using gene expression data. Computer Methods and Programs in Biomedicine 100(2): 132-139 (2010) | |
| 2009 | ||
| 11 | Holger Fröhlich, Özgür Sahin, Dorit Arlt, Christian Bender, Tim Beißbarth: Deterministic Effects Propagation Networks for reconstructing protein signaling networks from multiple interventions. BMC Bioinformatics 10: 322 (2009) | |
| 2008 | ||
| 10 | Florian Hahne, Alexander Mehrle, Dorit Arlt, Annemarie Poustka, Stefan Wiemann, Tim Beißbarth: Extending pathways based on gene lists using InterPro domain signatures. BMC Bioinformatics 9: (2008) | |
| 9 | Holger Fröhlich, Mark Fellmann, Holger Sültmann, Annemarie Poustka, Tim Beißbarth: Predicting pathway membership via domain signatures. Bioinformatics 24(19): 2137-2142 (2008) | |
| 8 | Holger Fröhlich, Tim Beißbarth, Achim Tresch, Dennis Kostka, Juby Jacob, Rainer Spang, Florian Markowetz: Analyzing gene perturbation screens with nested effects models in R and bioconductor. Bioinformatics 24(21): 2549-2550 (2008) | |
| 7 | Holger Fröhlich, Mark Fellmann, Holger Sültmann, Annemarie Poustka, Tim Beißbarth: Estimating large-scale signaling networks through nested effect models with intervention effects from microarray data. Bioinformatics 24(22): 2650-2656 (2008) | |
| 2007 | ||
| 6 | Holger Fröhlich, Mark Fellmann, Holger Sültmann, Annemarie Poustka, Tim Beißbarth: Estimating Large Scale Scale Signaling Networks through Nested Effects Models from Intervention Effects in Microarray Data. German Conference on Bioinformatics 2007: 45-54 | |
| 5 | Holger Fröhlich, Nora Speer, Annemarie Poustka, Tim Beißbarth: GOSim - an R-package for computation of information theoretic GO similarities between terms and gene products. BMC Bioinformatics 8: (2007) | |
| 4 | Holger Fröhlich, Mark Fellmann, Holger Sültmann, Annemarie Poustka, Tim Beißbarth: Large scale statistical inference of signaling pathways from RNAi and microarray data. BMC Bioinformatics 8: (2007) | |
| 3 | Achim Tresch, Tim Beißbarth, Holger Sültmann, Ruprecht Kuner, Annemarie Poustka, Andreas Buness: Discrimination of Direct and Indirect Interactions in a Network of Regulatory Effects. Journal of Computational Biology 14(9): 1217-1228 (2007) | |
| 2005 | ||
| 2 | Tim Beißbarth, Jason A. Tye-Din, Gordon K. Smyth, Terence P. Speed, Robert P. Anderson: A systematic approach for comprehensive T-cell epitope discovery using peptide libraries. ISMB (Supplement of Bioinformatics) 2005: 29-37 | |
| 2000 | ||
| 1 | Tim Beißbarth, Kurt Fellenberg, Benedikt Brors, R. Arribas-Prat, J. M. Boer, Nicole C. Hauser, Marcel Scheideler, Jörg D. Hoheisel, G. Schütz, Annemarie Poustka, Martin Vingron: Processing and quality control of DNA array hybridization data. Bioinformatics 16(11): 1014-1022 (2000) | |
Colors in the list of coauthors
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