Niko Beerenwinkel

	2012
22		Osvaldo Zagordi, Armin Töpfer, Sandhya Prabhakaran, Volker Roth, Eran Halperin, Niko Beerenwinkel: Probabilistic Inference of Viral Quasispecies Subject to Recombination. RECOMB 2012: 342-354
	2011
21		Osvaldo Zagordi, Arnab Bhattacharya, Nicholas Eriksson, Niko Beerenwinkel: ShoRAH: estimating the genetic diversity of a mixed sample from next-generation sequencing data. BMC Bioinformatics 12: 119 (2011)
	2009
20		Fahad Saeed, Ashfaq A. Khokhar, Osvaldo Zagordi, Niko Beerenwinkel: Multiple Sequence Alignment System for Pyrosequencing Reads. BICoB 2009: 362-375
19		Osvaldo Zagordi, Lukas Geyrhofer, Volker Roth, Niko Beerenwinkel: Deep Sequencing of a Genetically Heterogeneous Sample: Local Haplotype Reconstruction and Read Error Correction. RECOMB 2009: 271-284
18		Moritz Gerstung, Michael Baudis, Holger Moch, Niko Beerenwinkel: Quantifying cancer progression with conjunctive Bayesian networks. Bioinformatics 25(21): 2809-2815 (2009)
	2008
17		Nicholas Eriksson, Lior Pachter, Yumi Mitsuya, Soo-Yon Rhee, Chunlin Wang, Baback Gharizadeh, Mostafa Ronaghi, Robert W. Shafer, Niko Beerenwinkel: Viral Population Estimation Using Pyrosequencing. PLoS Computational Biology 4(5): (2008)
	2007
16		Niko Beerenwinkel, Tibor Antal, David Dingli, Arne Traulsen, Kenneth W. Kinzler, Victor E. Velculescu, Bert Vogelstein, Martin A. Nowak: Genetic Progression and the Waiting Time to Cancer. PLoS Computational Biology 3(11): (2007)
	2006
15		Kirsten Roomp, Niko Beerenwinkel, Tobias Sing, Eugen Schülter, Joachim Büch, Saleta Sierra-Aragon, Martin Däumer, Daniel Hoffmann, Rolf Kaiser, Thomas Lengauer, Joachim Selbig: Arevir: A Secure Platform for Designing Personalized Antiretroviral Therapies Against HIV. DILS 2006: 185-194
14		Tobias Sing, Niko Beerenwinkel: Mutagenetic tree Fisher kernel improves prediction of HIV drug resistance from viral genotype. NIPS 2006: 1297-1304
	2005
13		Tobias Sing, Niko Beerenwinkel, Thomas Lengauer, Valentina Svicher, Francesca Ceccherini-Silberstein, Carlo-Federico Perno: Supervised and Unsupervised Approaches for Analyzing Covariation and Phenotypic Impact of HIV Drug Resistance Mutations. LWA 2005: 234-239
12		Tobias Sing, Valentina Svicher, Niko Beerenwinkel, Francesca Ceccherini-Silberstein, Martin Däumer, Rolf Kaiser, Hauke Walter, Klaus Korn, Daniel Hoffmann, Mark Oette, Jürgen K. Rockstroh, Gerd Fätkenheuer, Carlo-Federico Perno, Thomas Lengauer: Characterization of Novel HIV Drug Resistance Mutations Using Clustering, Multidimensional Scaling and SVM-Based Feature Ranking. PKDD 2005: 285-296
11		Jörg Rahnenführer, Niko Beerenwinkel, Wolfgang A. Schulz, Christian Hartmann, Andreas von Deimling, Bernd Wullich, Thomas Lengauer: Estimating cancer survival and clinical outcome based on genetic tumor progression scores. Bioinformatics 21(10): 2438-2446 (2005)
10		Tobias Sing, Oliver Sander, Niko Beerenwinkel, Thomas Lengauer: ROCR: visualizing classifier performance in R. Bioinformatics 21(20): 3940-3941 (2005)
9		Niko Beerenwinkel, Tobias Sing, Thomas Lengauer, Jörg Rahnenführer, Kirsten Roomp, Igor Savenkov, Roman Fischer, Daniel Hoffmann, Joachim Selbig, Klaus Korn, Hauke Walter, Thomas Berg, Patrick Braun, Gerd Fätkenheuer, Mark Oette, Jürgen K. Rockstroh, Bernd Kupfer, Rolf Kaiser, Martin Däumer: Computational methods for the design of effective therapies against drug resistant HIV strains. Bioinformatics 21(21): 3943-3950 (2005)
8		Niko Beerenwinkel, Jörg Rahnenführer, Rolf Kaiser, Daniel Hoffmann, Joachim Selbig, Thomas Lengauer: Mtreemix: a software package for learning and using mixture models of mutagenetic trees. Bioinformatics 21(9): 2106-2107 (2005)
7		Niko Beerenwinkel, Jörg Rahnenführer, Martin Däumer, Daniel Hoffmann, Rolf Kaiser, Joachim Selbig, Thomas Lengauer: Learning Multiple Evolutionary Pathways from Cross-Sectional Data. Journal of Computational Biology 12(6): 584-598 (2005)
	2004
6		Niko Beerenwinkel, Jörg Rahnenführer, Martin Däumer, Daniel Hoffmann, Rolf Kaiser, Joachim Selbig, Thomas Lengauer: Learning multiple evolutionary pathways from cross-sectional data. RECOMB 2004: 36-44
5		Tobias Sing, Niko Beerenwinkel, Thomas Lengauer: Learning Mixtures of Localized Rules by Maximizing the Area Under the ROC Curve. ROCAI 2004: 89-96
	2003
4		Niko Beerenwinkel, Thomas Lengauer, Martin Däumer, Rolf Kaiser, Hauke Walter, Klaus Korn, Daniel Hoffmann, Joachim Selbig: Methods for optimizing antiviral combination therapies. ISMB (Supplement of Bioinformatics) 2003: 16-25
3		Niko Beerenwinkel, Martin Däumer, Mark Oette, Klaus Korn, Daniel Hoffmann, Rolf Kaiser, Thomas Lengauer, Joachim Selbig, Hauke Walter: Geno2pheno: estimating phenotypic drug resistance from HIV-1 genotypes. Nucleic Acids Research 31(13): 3850-3855 (2003)
	2001
2		Niko Beerenwinkel, Barbara Schmidt, Hauke Walter, Rolf Kaiser, Thomas Lengauer, Daniel Hoffmann, Klaus Korn, Joachim Selbig: Identifying drug resistance-associated patterns in HIV genotypes. German Conference on Bioinformatics 2001: 126-130
1		Niko Beerenwinkel, Barbara Schmidt, Hauke Walter, Rolf Kaiser, Thomas Lengauer, Daniel Hoffmann, Klaus Korn, Joachim Selbig: Geno2pheno: Interpreting Genotypic HIV Drug Resistance Tests. IEEE Intelligent Systems 16(6): 35-41 (2001)

Coauthor Index

1	Tibor Antal	[16]
2	Michael Baudis	[18]
3	Thomas Berg	[9]
4	Arnab Bhattacharya	[21]
5	Patrick Braun	[9]
6	Joachim Büch	[15]
7	Francesca Ceccherini-Silberstein	[12] [13]
8	Martin Däumer	[3] [4] [6] [7] [9] [12] [15]
9	Andreas von Deimling	[11]
10	David Dingli	[16]
11	Nicholas Eriksson	[17] [21]
12	Gerd Fätkenheuer	[9] [12]
13	Roman Fischer	[9]
14	Moritz Gerstung	[18]
15	Lukas Geyrhofer	[19]
16	Baback Gharizadeh	[17]
17	Eran Halperin	[22]
18	Christian Hartmann	[11]
19	Daniel Hoffmann	[1] [2] [3] [4] [6] [7] [8] [9] [12] [15]
20	Rolf Kaiser	[1] [2] [3] [4] [6] [7] [8] [9] [12] [15]
21	Ashfaq A. Khokhar	[20]
22	Kenneth W. Kinzler	[16]
23	Klaus Korn	[1] [2] [3] [4] [9] [12]
24	Bernd Kupfer	[9]
25	Thomas Lengauer	[1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [15]
26	Yumi Mitsuya	[17]
27	Holger Moch	[18]
28	Martin A. Nowak	[16]
29	Mark Oette	[3] [9] [12]
30	Lior Pachter	[17]
31	Carlo-Federico Perno	[12] [13]
32	Sandhya Prabhakaran	[22]
33	Jörg Rahnenführer	[6] [7] [8] [9] [11]
34	Soo-Yon Rhee	[17]
35	Jürgen K. Rockstroh	[9] [12]
36	Mostafa Ronaghi	[17]
37	Kirsten Roomp	[9] [15]
38	Volker Roth	[19] [22]
39	Fahad Saeed	[20]
40	Oliver Sander	[10]
41	Igor Savenkov	[9]
42	Barbara Schmidt	[1] [2]
43	Eugen Schülter	[15]
44	Wolfgang A. Schulz	[11]
45	Joachim Selbig	[1] [2] [3] [4] [6] [7] [8] [9] [15]
46	Robert W. Shafer	[17]
47	Saleta Sierra-Aragon	[15]
48	Tobias Sing	[5] [9] [10] [12] [13] [14] [15]
49	Valentina Svicher	[12] [13]
50	Armin Töpfer	[22]
51	Arne Traulsen	[16]
52	Victor E. Velculescu	[16]
53	Bert Vogelstein	[16]
54	Hauke Walter	[1] [2] [3] [4] [9] [12]
55	Chunlin Wang	[17]
56	Bernd Wullich	[11]
57	Osvaldo Zagordi	[19] [20] [21] [22]

Colors in the list of coauthors

Last update Sun May 27 04:04:01 2012 CET by the DBLP Team — Data released under the ODC-BY 1.0 license — See also our legal information page