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| 2011 | ||
|---|---|---|
| 25 | Christopher J. O. Baker, Rajaraman Kanagasabai: Extraction and Grounding of Protein Mutations via Semantic Integration of Text and Sequence Information. AINA 2011: 556-563 | |
| 24 | Alexandre Kouznetsov, Jonas B. Laurila, Christopher J. O. Baker, Bradley Shoebottom: Algorithm for Population of Object Property Assertions Derived from Telecom Contact Centre Product Support Documentation. AINA Workshops 2011: 41-46 | |
| 23 | Alexandre Riazanov, Gregory W. Rose, Artjom Klein, Alan J. Forster, Christopher J. O. Baker, Arash Shaban-Nejad, David L. Buckeridge: Towards clinical intelligence with SADI semantic web services: a case study with hospital-acquired infections data. SWAT4LS 2011: 106-113 | |
| 22 | Leonid L. Chepelev, Alexandre Riazanov, Alexandre Kouznetsov, Hong Sang Low, Michel Dumontier, Christopher J. O. Baker: Prototype Semantic Infrastructure for Automated Small Molecule Classification and Annotation in Lipidomics. BMC Bioinformatics 12: 303 (2011) | |
| 21 | Nona Naderi, Thomas Kappler, Christopher J. O. Baker, René Witte: OrganismTagger: detection, normalization and grounding of organism entities in biomedical documents. Bioinformatics 27(19): 2721-2729 (2011) | |
| 2010 | ||
| 20 | Jonas Laurila Bergman, Rajaraman Kanagasabai, Christopher J. O. Baker: Algorithm for Grounding Mutation Mentions from Text to Protein Sequences. DILS 2010: 122-131 | |
| 19 | Dietrich Rebholz-Schuhmann, Antonio Jimeno-Yepes, Chen Li, Senay Kafkas, Ian Lewin, Ning Kang, Peter Corbett, David Milward, Ekaterina Buyko, Elena Beisswanger, Kerstin Hornbostel, Alexandre Kouznetsov, René Witte, Jonas B. Laurila, Christopher J. O. Baker, Chen-Ju Kuo, Simon Clematide, Fabio Rinaldi, Richárd Farkas, György Móra, Kazuo Hara, Laura Inés Furlong, Michael Rautschka, Mariana L. Neves, Alberto D. Pascual-Montano, Qi Wei, Nigel Collier, Md. Faisal Mahbub Chowdhury, Alberto Lavelli, Rafael Berlanga Llavori, Roser Morante, Vincent Van Asch, Walter Daelemans, José Luís Marina, Erik M. van Mulligen, Jan A. Kors, Udo Hahn: Assessment of NER solutions against the first and second CALBC silver standard corpus. Semantic Mining in Biomedicine 2010 | |
| 2009 | ||
| 18 | Christopher J. O. Baker, Patrick Lambrix, Jonas Laurila Bergman, Kanagasabai Rajaraman, Wee Tiong Ang: Slicing through the Scientific Literature. DILS 2009: 127-140 | |
| 17 | Christopher J. O. Baker, Dietrich Rebholz-Schuhmann: Between proteins and phenotypes: annotation and interpretation of mutations. BMC Bioinformatics 10(S-8): 0 (2009) | |
| 2008 | ||
| 16 | Christopher J. O. Baker, Jian Su: Short Paper Proceedings of the 2nd International Symposium on Languages in Biology and Medicine (LBM 2007), Singapore, December 6-7, 2007 CEUR-WS.org 2008 | |
| 15 | Donald J. Patterson, Christopher J. O. Baker, Xianghua Ding, Samuel J. Kaufman, Kah Liu, Andrew Zaldivar: Online everywhere: evolving mobile instant messaging practices. UbiComp 2008: 64-73 | |
| 14 | Christopher J. O. Baker, Kanagasabai Rajaraman, Wee Tiong Ang, Anitha Veeramani, Hong Sang Low, Markus Wenk: Towards ontology-driven navigation of the lipid bibliosphere. BMC Bioinformatics 9(S-1): (2008) | |
| 13 | Jian Su, Christopher J. O. Baker: The Second International Symposium on Languages in Biology and Medicine (LBM) 2007. BMC Bioinformatics 9(S-3): (2008) | |
| 12 | Menaka Rajapakse, Kanagasabai Rajaraman, Wee Tiong Ang, Anitha Veeramani, Mark J. Schreiber, Christopher J. O. Baker: Ontology-centric integration and navigation of the dengue literature. Journal of Biomedical Informatics 41(5): 806-815 (2008) | |
| 2007 | ||
| 11 | Kanagasabai Rajaraman, Hong Sang Low, Wee Tiong Ang, Anitha Veeramani, Markus Wenk, Christopher J. O. Baker: Literature-driven, Ontology-centric Knowledge Navigation for Lipidomics. FIRST 2007: 42-55 | |
| 10 | René Witte, Thomas Kappler, Christopher J. O. Baker: Enhanced semantic access to the protein engineering literature using ontologies populated by text mining. IJBRA 3(3): 389-413 (2007) | |
| 9 | Kanagasabai Rajaraman, Khar Heng Choo, Shoba Ranganathan, Christopher J. O. Baker: A Workflow for Mutation Extraction and Structure Annotation. J. Bioinformatics and Computational Biology 5(6): 1319-1337 (2007) | |
| 8 | René Witte, Christopher J. O. Baker: Towards a Systematic Evaluation of protein Mutation Extraction Systems. J. Bioinformatics and Computational Biology 5(6): 1339-1359 (2007) | |
| 2006 | ||
| 7 | Christopher J. O. Baker, Xiao Su, Greg Butler, Volker Haarslev: Ontoligent Interactive Query Tool. CSWWS 2006: 155-169 | |
| 6 | Farzad Kohantorabi, Gregory Butler, Christopher J. O. Baker: A Distributed Agent System upon Semantic Web Technologies to Provide Biological Data. CSWWS 2006: 63-80 | |
| 5 | Leila Kosseim, Reda Siblini, Christopher J. O. Baker, Sabine Bergler: Using Selectional Restrictions to Query an OWL Ontology. FOIS 2006: 360-371 | |
| 4 | Christopher J. O. Baker, René Witte: Mutation Mining-A Prospector's Tale. Information Systems Frontiers 8(1): 47-57 (2006) | |
| 3 | Christopher J. O. Baker, Arash Shaban-Nejad, Xiao Su, Volker Haarslev, Greg Butler: Semantic web infrastructure for fungal enzyme biotechnologists. J. Web Sem. 4(3): 168-180 (2006) | |
| 2005 | ||
| 2 | Arash Shaban-Nejad, Christopher J. O. Baker, Volker Haarslev, Greg Butler: The FungalWeb Ontology: Semantic Web Challenges in Bioinformatics and Genomics. International Semantic Web Conference 2005: 1063-1066 | |
| 1 | René Witte, Christopher J. O. Baker: Combining Biological Databases and Text Mining to Support New Bioinformatics Applications. NLDB 2005: 310-321 | |
Colors in the list of coauthors
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