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| 2011 | ||
|---|---|---|
| 20 | John H. Morris, Leonard Apeltsin, Aaron M. Newman, Jan Baumbach, Tobias Wittkop, Gang Su, Gary D. Bader, Thomas E. Ferrin: clusterMaker: a multi-algorithm clustering plugin for Cytoscape. BMC Bioinformatics 12: 436 (2011) | |
| 19 | Xiaojian Shao, Chris S. H. Tan, Courtney Voss, Shawn S. C. Li, Naiyang Deng, Gary D. Bader: A regression framework incorporating quantitative and negative interaction data improves quantitative prediction of PDZ domain-peptide interaction from primary sequence. Bioinformatics 27(3): 383-390 (2011) | |
| 18 | Ethan G. Cerami, Benjamin E. Gross, Emek Demir, Igor Rodchenkov, Özgün Babur, Nadia Anwar, Nikolaus Schultz, Gary D. Bader, Chris Sander: Pathway Commons, a web resource for biological pathway data. Nucleic Acids Research 39(Database-Issue): 685-690 (2011) | |
| 17 | Magali Michaut, Anastasia Baryshnikova, Michael Costanzo, Chad L. Myers, Brenda J. Andrews, Charles Boone, Gary D. Bader: Protein Complexes are Central in the Yeast Genetic Landscape. PLoS Computational Biology 7(2): (2011) | |
| 2010 | ||
| 16 | Shirley Hui, Gary D. Bader: Proteome scanning to predict PDZ domain interactions using support vector machines. BMC Bioinformatics 11: 507 (2010) | |
| 15 | Shobhit Jain, Gary D. Bader: An improved method for scoring protein-protein interactions using semantic similarity within the Gene Ontology. BMC Bioinformatics 11: 562 (2010) | |
| 14 | Christian Tannus Lopes, Max Franz, Farzana Kazi, Sylva L. Donaldson, Quaid Morris, Gary D. Bader: Cytoscape Web: an interactive web-based network browser. Bioinformatics 26(18): 2347-2348 (2010) | |
| 13 | Jason Montojo, Khalid Zuberi, H. Rodriguez, Farzana Kazi, George Wright, Sylva L. Donaldson, Quaid Morris, Gary D. Bader: GeneMANIA Cytoscape plugin: fast gene function predictions on the desktop. Bioinformatics 26(22): 2927-2928 (2010) | |
| 12 | Judice L. Y. Koh, Huiming Ding, Michael Costanzo, Anastasia Baryshnikova, Kiana Toufighi, Gary D. Bader, Chad L. Myers, Brenda J. Andrews, Charles Boone: DRYGIN: a database of quantitative genetic interaction networks in yeast. Nucleic Acids Research 38(Database-Issue): 502-507 (2010) | |
| 11 | David Warde-Farley, Sylva L. Donaldson, Ovi Comes, Khalid Zuberi, Rashad Badrawi, Pauline Chao, Max Franz, Chris Grouios, Farzana Kazi, Christian Tannus Lopes, Anson Maitland, Sara Mostafavi, Jason Montojo, Quentin Shao, George Wright, Gary D. Bader, Quaid Morris: The GeneMANIA prediction server: biological network integration for gene prioritization and predicting gene function. Nucleic Acids Research 38(Web-Server-Issue): 214-220 (2010) | |
| 2008 | ||
| 10 | Maital Ashkenazi, Gary D. Bader, Allan Kuchinsky, Menachem Moshelion, David J. States: Cytoscape ESP: simple search of complex biological networks. Bioinformatics 24(12): 1465-1466 (2008) | |
| 2007 | ||
| 9 | Jomol P. Mathew, Barry S. Taylor, Gary D. Bader, Saiju Pyarajan, Marco Antoniotti, Arul M. Chinnaiyan, Chris Sander, Steven J. Burakoff, Bud Mishra: From Bytes to Bedside: Data Integration and Computational Biology for Translational Cancer Research. PLoS Computational Biology 3(2): (2007) | |
| 2006 | ||
| 8 | Ethan G. Cerami, Gary D. Bader, Benjamin E. Gross, Chris Sander: cPath: open source software for collecting, storing, and querying biological pathways. BMC Bioinformatics 7: 497 (2006) | |
| 7 | Gary D. Bader, Michael P. Cary, Chris Sander: Pathguide: a Pathway Resource List. Nucleic Acids Research 34(Database-Issue): 504-506 (2006) | |
| 2003 | ||
| 6 | Ian M. Donaldson, Joel D. Martin, Berry de Bruijn, Cheryl Wolting, Vicki Lay, Brigitte Tuekam, Shudong Zhang, Berivan Baskin, Gary D. Bader, Katerina Michalickova, Tony Pawson, Christopher W. V. Hogue: PreBIND and Textomy - mining the biomedical literature for protein-protein interactions using a support vector machine. BMC Bioinformatics 4: 11 (2003) | |
| 5 | Gary D. Bader, Christopher W. V. Hogue: An automated method for finding molecular complexes in large protein interaction networks. BMC Bioinformatics 4: 2 (2003) | |
| 4 | Gary D. Bader, Doron Betel, Christopher W. V. Hogue: BIND: the Biomolecular Interaction Network Database. Nucleic Acids Research 31(1): 248-250 (2003) | |
| 2002 | ||
| 3 | Katerina Michalickova, Gary D. Bader, Michel Dumontier, Hao Lieu, Doron Betel, Ruth Isserlin, Christopher W. V. Hogue: SeqHound: biological sequence and structure database as a platform for bioinformatics research. BMC Bioinformatics 3: 32 (2002) | |
| 2001 | ||
| 2 | Gary D. Bader, Ian M. Donaldson, Cheryl Wolting, B. F. Francis Ouellette, Tony Pawson, Christopher W. V. Hogue: BIND - The Biomolecular Interaction Network Database. Nucleic Acids Research 29(1): 242-245 (2001) | |
| 2000 | ||
| 1 | Gary D. Bader, Christopher W. V. Hogue: BIND-a data specification for storing and describing biomolecular interactions, molecular complexes and pathways. Bioinformatics 16(5): 465-477 (2000) | |
Colors in the list of coauthors
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