 | 2011 |
| 7 |  | Antony Le Béchec,
Elodie Portales-Casamar,
Guillaume Vetter,
Michèle Moes,
Pierre-Joachim Zindy,
Anne Saumet,
David J. Arenillas,
Charles Theillet,
Wyeth W. Wasserman,
Charles-Henri Lecellier,
Evelyne Friederich:
MIR@NT@N: a framework integrating transcription factors, microRNAs and their targets to identify sub-network motifs in a meta-regulation network model.
BMC Bioinformatics 12: 67 (2011) |
| 6 |  | Andrew T. Kwon,
Alice Yi Chou,
David J. Arenillas,
Wyeth W. Wasserman:
Validation of Skeletal Muscle cis-Regulatory Module Predictions Reveals Nucleotide Composition Bias in Functional Enhancers.
PLoS Computational Biology 7(12): (2011) |
| 2010 |
| 5 |  | Elodie Portales-Casamar,
Supat Thongjuea,
Andrew T. Kwon,
David J. Arenillas,
Xiaobei Zhao,
Eivind Valen,
Dimas Yusuf,
Boris Lenhard,
Wyeth W. Wasserman,
Albin Sandelin:
JASPAR 2010: the greatly expanded open-access database of transcription factor binding profiles.
Nucleic Acids Research 38(Database-Issue): 105-110 (2010) |
| 2009 |
| 4 |  | Elodie Portales-Casamar,
David J. Arenillas,
Jonathan S. Lim,
Magdalena I. Swanson,
Steven Jiang,
Anthony McCallum,
Stefan Kirov,
Wyeth W. Wasserman:
The PAZAR database of gene regulatory information coupled to the ORCA toolkit for the study of regulatory sequences.
Nucleic Acids Research 37(Database-Issue): 54-60 (2009) |
| 2008 |
| 3 |  | Malin C. Andersen,
Pär G. Engström,
Stuart Lithwick,
David J. Arenillas,
Per Eriksson,
Boris Lenhard,
Wyeth W. Wasserman,
Jacob Odeberg:
In Silico Detection of Sequence Variations Modifying Transcriptional Regulation.
PLoS Computational Biology 4(1): (2008) |
| 2007 |
| 2 |  | Shannan J. Ho Sui,
Debra L. Fulton,
David J. Arenillas,
Andrew T. Kwon,
Wyeth W. Wasserman:
oPOSSUM: integrated tools for analysis of regulatory motif over-representation.
Nucleic Acids Research 35(Web-Server-Issue): 245-252 (2007) |
| 2006 |
| 1 |  | Shao-Shan Huang,
Debra L. Fulton,
David J. Arenillas,
Paul Perco,
Shannan J. Ho Sui,
James R. Mortimer,
Wyeth W. Wasserman:
Identification of Over-Represented Combinations of Transcription Factor Binding Sites in Sets of Co-Expressed Genes.
APBC 2006: 247-256 |