 | 2011 |
| 11 |  | Mehmet Serkan Apaydin,
Bülent Çatay,
Nicholas Patrick,
Bruce Randall Donald:
NVR-BIP: Nuclear Vector Replacement using Binary Integer Programming for NMR Structure-Based Assignments.
Comput. J. 54(5): 708-716 (2011) |
| 2010 |
| 10 |  | Mehmet Çagri Çalpur,
Hakan Erdogan,
Bülent Çatay,
Bruce Randall Donald,
Mehmet Serkan Apaydin:
Developing a Scoring Function for NMR Structure-based Assignments using Machine Learning.
ISCIS 2010: 87-90 |
| 2009 |
| 9 |  | Mehmet Serkan Apaydin,
Bülent Çatay,
Nicholas Patrick,
Bruce Randall Donald:
NVR-BIP: Nuclear vector replacement using binary integer programming for NMR structure-based assignments.
ISCIS 2009: 177-182 |
| 2007 |
| 8 |  | Tsung-Han Chiang,
Mehmet Serkan Apaydin,
Douglas L. Brutlag,
David Hsu,
Jean-Claude Latombe:
Using Stochastic Roadmap Simulation to Predict Experimental Quantities in Protein Folding Kinetics: Folding Rates and Phi-Values.
Journal of Computational Biology 14(5): 578-593 (2007) |
| 2006 |
| 7 |  | Tsung-Han Chiang,
Mehmet Serkan Apaydin,
Douglas L. Brutlag,
David Hsu,
Jean-Claude Latombe:
Predicting Experimental Quantities in Protein Folding Kinetics Using Stochastic Roadmap Simulation.
RECOMB 2006: 410-424 |
| 2003 |
| 6 |  | Mehmet Serkan Apaydin,
Douglas L. Brutlag,
Carlos Guestrin,
David Hsu,
Jean-Claude Latombe,
Chris Varma:
Stochastic Roadmap Simulation: An Efficient Representation and Algorithm for Analyzing Molecular Motion.
Journal of Computational Biology 10(3/4): 257-281 (2003) |
| 2002 |
| 5 |  | Mehmet Serkan Apaydin,
Carlos Guestrin,
Chris Varma,
Douglas L. Brutlag,
Jean-Claude Latombe:
Stochastic roadmap simulation for the study of ligand-protein interactions.
ECCB 2002: 18-26 |
| 4 |  | Douglas L. Brutlag,
Mehmet Serkan Apaydin,
Carlos Guestrin,
David Hsu,
Chris Varma,
Amit Pal Singh,
Jean-Claude Latombe:
Using robotics to fold proteins and dock ligands.
ECCB 2002: 74-74 |
| 3 |  | Mehmet Serkan Apaydin,
Douglas L. Brutlag,
Carlos Guestrin,
David Hsu,
Jean-Claude Latombe:
Stochastic roadmap simulation: an efficient representation and algorithm for analyzing molecular motion.
RECOMB 2002: 12-21 |
| 2001 |
| 2 |  | Mehmet Serkan Apaydin,
Amit Pal Singh,
Douglas L. Brutlag,
Jean-Claude Latombe:
Capturing Molecular Energy Landscapes with Probabilistic Conformational Roadmaps.
ICRA 2001: 932-939 |
| 1 |  | Richard Beigel,
Noga Alon,
Simon Kasif,
Mehmet Serkan Apaydin,
Lance Fortnow:
An optimal procedure for gap closing in whole genome shotgun sequencing.
RECOMB 2001: 22-30 |