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| 2011 | ||
|---|---|---|
| 36 | Antonio Mucherino, Inken Wohlers, Gunnar W. Klau, Rumen Andonov: Sparsifying Distance Matrices for Protein-Protein Structure Alignments. CTW 2011: 211-214 | |
| 35 | Noël Malod-Dognin, Mathilde Le Boudic-Jamin, Pritish Kamath, Rumen Andonov: Using Dominances for Solving the Protein Family Identification Problem. WABI 2011: 201-212 | |
| 34 | Guillaume Collet, Rumen Andonov, Nicola Yanev, Jean-François Gibrat: Local protein threading by Mixed Integer Programming. Discrete Applied Mathematics 159(16): 1707-1716 (2011) | |
| 33 | Inken Wohlers, Rumen Andonov, Gunnar W. Klau: Algorithm engineering for optimal alignment of protein structure distance matrices. Optimization Letters 5(3): 421-433 (2011) | |
| 2010 | ||
| 32 | Lazaros Mavridis, Vishwesh Venkatraman, David W. Ritchie, Naoto Morikawa, Rumen Andonov, Alexandre Cornu, Noël Malod-Dognin, Jacques Nicolas, Maja Temerinac-Ott, Marco Reisert, Hans Burkhardt, Apostolos Axenopoulos, Petros Daras: SHREC'10 Track: Protein Model Classification. 3DOR 2010: 117-124 | |
| 31 | Noël Malod-Dognin, Rumen Andonov, Nicola Yanev: Maximum Cliques in Protein Structure Comparison. SEA 2010: 106-117 | |
| 2009 | ||
| 30 | Guillaume Collet, Rumen Andonov, Nicola Yanev, Jean-François Gibrat: Protein Threading. CTW 2009: 341-344 | |
| 29 | Vincent Poirriez, Nicola Yanev, Rumen Andonov: A hybrid algorithm for the unbounded knapsack problem. Discrete Optimization 6(1): 110-124 (2009) | |
| 2008 | ||
| 28 | Rumen Andonov, Nicola Yanev, Noël Malod-Dognin: An Efficient Lagrangian Relaxation for the Contact Map Overlap Problem. WABI 2008: 162-173 | |
| 27 | Nicola Yanev, Rumen Andonov, Philippe Veber, Stefan Balev: Lagrangian approaches for a class of matching problems in computational biology. Computers & Mathematics with Applications 55(5): 1054-1067 (2008) | |
| 26 | Stefan Balev, Nicola Yanev, Arnaud Fréville, Rumen Andonov: A dynamic programming based reduction procedure for the multidimensional 0-1 knapsack problem. European Journal of Operational Research 186(1): 63-76 (2008) | |
| 2007 | ||
| 25 | Rumen Andonov, Guillaume Collet, Jean-François Gibrat, Antoine Marin, Vincent Poirriez, Nicola Yanev: Recent Advances in Solving the Protein Threading Problem CoRR abs/0707.3750: (2007) | |
| 2005 | ||
| 24 | Vincent Poirriez, Rumen Andonov, Antoine Marin, Jean-François Gibrat: FROST: Revisited and Distributed. IPDPS 2005 | |
| 23 | Philippe Veber, Nicola Yanev, Rumen Andonov, Vincent Poirriez: Optimal Protein Threading by Cost-Splitting. WABI 2005: 365-375 | |
| 22 | Rumen Andonov, Dominique Lavenier, Philippe Veber, Nicola Yanev: Dynamic programming for LR-PCR segmentation of bacterium genomes. Concurrency and Computation: Practice and Experience 17(14): 1657-1668 (2005) | |
| 2004 | ||
| 21 | Rumen Andonov, Dominique Lavenier, Philippe Veber, Nicola Yanev: Dynamic Programming for LR-PCR Segmention of Bacterium Genomes. IPDPS 2004 | |
| 20 | Nicola Yanev, Rumen Andonov: Parallel divide and conquer approach for the protein threading problem. Concurrency - Practice and Experience 16(9): 961-974 (2004) | |
| 19 | Rumen Andonov, Stefan Balev, Nicola Yanev: Protein Threading: From Mathematical Models to Parallel Implementations. INFORMS Journal on Computing 16(4): 393-405 (2004) | |
| 2003 | ||
| 18 | Nicola Yanev, Rumen Andonov: Solving the Protein Threading Problem in Parallel. IPDPS 2003: 157 | |
| 17 | Francisco Almeida, Rumen Andonov, Luz Marina Moreno, Vincent Poirriez, Melquíades Pérez Pérez, Casiano Rodríguez: On the parallel prediction of the RNA secondary structure. PARCO 2003: 525-532 | |
| 16 | Rumen Andonov, Stephan Balev, Sanjay V. Rajopadhye, Nicola Yanev: Optimal Semi-Oblique Tiling. IEEE Trans. Parallel Distrib. Syst. 14(9): 944-960 (2003) | |
| 2002 | ||
| 15 | Francisco Almeida, Rumen Andonov, Daniel González, Luz Marina Moreno, Vincent Poirriez, Casiano Rodríguez: Optimal tiling for the RNA base pairing problem. SPAA 2002: 173-182 | |
| 2001 | ||
| 14 | Rumen Andonov, Stephan Balev, Sanjay V. Rajopadhye, Nicola Yanev: Optimal semi-oblique tiling. SPAA 2001: 153-162 | |
| 2000 | ||
| 13 | Rumen Andonov, Vincent Poirriez, Sanjay V. Rajopadhye: Unbounded knapsack problem: Dynamic programming revisited. European Journal of Operational Research 123(2): 394-407 (2000) | |
| 1999 | ||
| 12 | Hafid Bourzoufi, Benamar Sidi-Boulenouar, Rumen Andonov: Tiling and Processors Allocation for Three Dimensional Iteration Space. HiPC 1999: 125-129 | |
| 11 | Stephan Balev, Rumen Andonov, Arnaud Fréville: A Parallel Branch-and-Bound Algorithm for the Classification Problem. HiPC 1999: 274-278 | |
| 1998 | ||
| 10 | Rumen Andonov, Sanjay V. Rajopadhye, Nicola Yanev: Optimal Orthogonal Tiling. Euro-Par 1998: 480-490 | |
| 1997 | ||
| 9 | Rumen Andonov, Nicola Yanev, Hafid Bourzoufi: Three-dimensional orthogonal tile sizing problem: mathematical programming approach. ASAP 1997: 209-218 | |
| 8 | Rumen Andonov, Sanjay V. Rajopadhye: Knapsack on VLSI: from Algorithm to Optimal Circuit. IEEE Trans. Parallel Distrib. Syst. 8(6): 545-561 (1997) | |
| 7 | Rumen Andonov, Sanjay V. Rajopadhye: Optimal Orthogonal Tiling of 2-D Iterations. J. Parallel Distrib. Comput. 45(2): 159-165 (1997) | |
| 1996 | ||
| 6 | Florent de Dinechin, Doran Wilde, Sanjay V. Rajopadhye, Rumen Andonov: A Regular VLSI Array for an Irregular Algorithm. IRREGULAR 1996: 195-200 | |
| 1995 | ||
| 5 | Rumen Andonov, Patrice Quinton, Sanjay V. Rajopadhye, Doran Wilde: A Shift Registered-Based Systolic Array for the Unbounded Knapsack Problem. Parallel Processing Letters 5: 251-262 (1995) | |
| 1994 | ||
| 4 | Rumen Andonov, Sanjay V. Rajopadhye: Optimal Tile Sizing. CONPAR 1994: 701-712 | |
| 3 | Rumen Andonov, Patrice Quinton, Sanjay V. Rajopadhye, Doran Wilde: Pure Systolic Array for a Class of Dynamic Dependency Recurrences. Parcella 1994: 207-214 | |
| 1992 | ||
| 2 | Rumen Andonov, Patrice Quinton: Efficient Linear Systolic Array for the Knapsack Problem. CONPAR 1992: 247-258 | |
| 1991 | ||
| 1 | Rumen Andonov, Frédéric Gruau: A 2D toroidal systolic array for the knapsack problem. Algorithms and Parallel VLSI Architectures 1991: 71-78 | |
Colors in the list of coauthors
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