Srinivas Aluru

	2012
98		Srinivas Aluru: Invited: Reverse engineering whole-genome networks. ICCABS 2012: 1
97		Srinivas Aluru: Workshop: Taxonomic clustering of large-scale metagnomic data. ICCABS 2012: 1
96		Xiao Yang, Florian Sikora, Guillaume Blin, Sylvie Hamel, Romeo Rizzi, Srinivas Aluru: An Algorithmic View on Multi-Related-Segments: A Unifying Model for Approximate Common Interval. TAMC 2012: 319-329
	2011
95		Srinivas Aluru, Sanghamitra Bandyopadhyay, Ümit V. Çatalyürek, Devdatt P. Dubhashi, Phillip H. Jones, Manish Parashar, Bertil Schmidt: Contemporary Computing - 4th International Conference, IC3 2011, Noida, India, August 8-10, 2011. Proceedings Springer 2011
94		Aditya Varma, Abhiram Ranade, Srinivas Aluru: An improved maximum likelihood formulation for accurate genome assembly. ICCABS 2011: 165-170
93		Xiao Yang, Karin S. Dorman, Srinivas Aluru: Workshop: Flexible read decomposition for improved short read error correction. ICCABS 2011: 277
92		Olga Nikolova, Srinivas Aluru: Parallel Discovery of Direct Causal Relations and Markov Boundaries with Applications to Gene Networks. ICPP 2011: 512-521
91		Xiao Yang, Jaroslaw Zola, Srinivas Aluru: Parallel Metagenomic Sequence Clustering Via Sketching and Maximal Quasi-clique Enumeration on Map-Reduce Clouds. IPDPS 2011: 1223-1233
90		Ananth Kalyanaraman, Srinivas Aluru, David A. Bader: HiCOMB Introduction. IPDPS Workshops 2011: 426-427
89		Srinivas Aluru: Bioinformatics. Encyclopedia of Parallel Computing 2011: 134-136
88		Jaroslaw Zola, Srinivas Aluru, Srinivas Aluru: Systems Biology, Network Inference in. Encyclopedia of Parallel Computing 2011: 1997-2002
87		Jaroslaw Zola, Srinivas Aluru, Srinivas Aluru: Systems Biology, Network Inference in. Encyclopedia of Parallel Computing 2011: 1997-2002
86		Abhinav Sarje, Jaroslaw Zola, Srinivas Aluru: Accelerating Pairwise Computations on Cell Processors. IEEE Trans. Parallel Distrib. Syst. 22(1): 69-77 (2011)
	2010
85		Xiao Yang, Srinivas Aluru: An Improved Model for Gene Cluster Inference. BICoB 2010: 190-195
84		William Sarje, Srinivas Aluru: A MapReduce Style Framework for Computations on Trees. ICPP 2010: 343-352
83		Benjamin G. Jackson, Matthew Regennitter, Xiao Yang, Patrick S. Schnable, Srinivas Aluru: Parallel de novo assembly of large genomes from high-throughput short reads. IPDPS 2010: 1-10
82		George Karypis, Srinivas Aluru, David A. Bader: Message from the workshop chairs. IPDPS Workshops 2010: 1-2
81		Abhinav Sarje, Srinivas Aluru: Parallel applications employing pairwise computations on emerging architectures. IPDPS Workshops 2010: 1-4
80		Xiao Yang, Karin S. Dorman, Srinivas Aluru: Reptile: representative tiling for short read error correction. Bioinformatics 26(20): 2526-2533 (2010)
79		Jaroslaw Zola, Maneesha Aluru, Abhinav Sarje, Srinivas Aluru: Parallel Information-Theory-Based Construction of Genome-Wide Gene Regulatory Networks. IEEE Trans. Parallel Distrib. Syst. 21(12): 1721-1733 (2010)
78		André Wehe, Wen-Chieh Chang, Oliver Eulenstein, Srinivas Aluru: A scalable parallelization of the gene duplication problem. J. Parallel Distrib. Comput. 70(3): 237-244 (2010)
	2009
77		Sanjay Ranka, Srinivas Aluru, Rajkumar Buyya, Yeh-Ching Chung, Sumeet Dua, Ananth Grama, Sandeep K. S. Gupta, Rajeev Kumar, Vir V. Phoha: Contemporary Computing - Second International Conference, IC3 2009, Noida, India, August 17-19, 2009. Proceedings Springer 2009
76		Benjamin G. Jackson, Patrick S. Schnable, Srinivas Aluru: Assembly of Large Genomes from Paired Short Reads. BICoB 2009: 30-43
75		Olga Nikolova, Jaroslaw Zola, Srinivas Aluru: A parallel algorithm for exact Bayesian network inference. HiPC 2009: 342-349
74		Jaroslaw Zola, Abhinav Sarje, Srinivas Aluru: Constructing Gene Regulatory Networks on Clusters of Cell Processors. ICPP 2009: 108-115
73		Melapudi Vikram, Andrew Baczewzki, B. Shanker, Srinivas Aluru: Parallel accelerated cartesian expansions for particle dynamics simulations. IPDPS 2009: 1-11
72		Benjamin G. Jackson, Patrick S. Schnable, Srinivas Aluru: Parallel short sequence assembly of transcriptomes. BMC Bioinformatics 10(S-1): (2009)
71		Abhinav Sarje, Srinivas Aluru: Parallel Genomic Alignments on the Cell Broadband Engine. IEEE Trans. Parallel Distrib. Syst. 20(11): 1600-1610 (2009)
	2008
70		Jaroslaw Zola, Maneesha Aluru, Srinivas Aluru: Parallel Information Theory Based Construction of Gene Regulatory Networks. HiPC 2008: 336-349
69		Sudip Seal, Michael Moody, Anna Ceguerra, Simon Ringer, Krishna Rajan, Srinivas Aluru: Tracking Nanostructural Evolution in Alloys: Large-Scale Analysis of Atom Probe Tomography Data on Blue Gene/L. ICPP 2008: 338-345
68		Benjamin G. Jackson, Srinivas Aluru: Parallel Construction of Bidirected String Graphs for Genome Assembly. ICPP 2008: 346-353
67		Andrew Janowczyk, Sharat Chandran, Srinivas Aluru: Fast, Processor-Cardinality Agnostic PRNG with a Tracking Application. ICVGIP 2008: 171-178
66		Abhinav Sarje, Srinivas Aluru: Parallel biological sequence alignments on the Cell Broadband Engine. IPDPS 2008: 1-11
65		Srinivas Aluru: Text Indexing. Encyclopedia of Algorithms 2008
64		Benjamin G. Jackson, Patrick S. Schnable, Srinivas Aluru: Consensus Genetic Maps as Median Orders from Inconsistent Sources. IEEE/ACM Trans. Comput. Biology Bioinform. 5(2): 161-171 (2008)
63		David A. Bader, Srinivas Aluru: High-performance computational biology. Parallel Computing 34(11): 613-615 (2008)
62		Michael Ott, Jaroslaw Zola, Srinivas Aluru, Andrew D. Johnson, Daniel Janies, Alexandros Stamatakis: Large-scale phylogenetic analysis on current HPC architectures. Scientific Programming 16(2-3): 255-270 (2008)
	2007
61		Srinivas Aluru, Manish Parashar, Ramamurthy Badrinath, Viktor K. Prasanna: High Performance Computing - HiPC 2007, 14th International Conference, Goa, India, December 18-21, 2007, Proceedings Springer 2007
60		Srinivas Aluru: The Combinatorics of Sequencing the Corn Genome. COCOON 2007: 1
59		Srinivas Aluru, David A. Bader, Anantharaman Kalyanaraman: Symposium Evening Tutorial: High-performance Computing Methods for Computational Genomics. IPDPS 2007: 13
58		Jaroslaw Zola, Xiao Yang, Adrian Rospondek, Srinivas Aluru: PARALLEL-TCOFFEE: A parallel multiple sequence aligner. ISCA PDCS 2007: 248-253
57		Scott J. Emrich, Anantharaman Kalyanaraman, Srinivas Aluru: Massively parallel expressed sequence tag clustering. ISCA PDCS 2007: 254-261
56		Michael Ott, Jaroslaw Zola, Alexandros Stamatakis, Srinivas Aluru: Large-scale maximum likelihood-based phylogenetic analysis on the IBM BlueGene/L. SC 2007: 4
55		Pang Ko, Srinivas Aluru: Optimal Self-adjusting Trees for Dynamic String Data in Secondary Storage. SPIRE 2007: 184-194
54		Anantharaman Kalyanaraman, Scott J. Emrich, Patrick S. Schnable, Srinivas Aluru: Assembling genomes on large-scale parallel computers. J. Parallel Distrib. Comput. 67(12): 1240-1255 (2007)
	2006
53		Pang Ko, Srinivas Aluru: Obtaining Provably Good Performance from Suffix Trees in Secondary Storage. CPM 2006: 72-83
52		Srikanta Tirthapura, Sudip Seal, Srinivas Aluru: A Formal Analysis of Space Filling Curves for Parallel Domain Decomposition. ICPP 2006: 505-512
51		Anantharaman Kalyanaraman, Scott J. Emrich, Patrick S. Schnable, Srinivas Aluru: Assembling genomes on large-scale parallel computers. IPDPS 2006
50		Sudip Seal, Srinivas Aluru: Communication-aware Parallel Domain Decomposition using Space Filling Curves. ISCA PDCS 2006: 159-164
49		Srinivas Aluru, David A. Bader, Anantharaman Kalyanaraman: M11 - High-performance computing methods for computational genomics. SC 2006: 225
48		Srinivas Aluru, Nancy M. Amato, David A. Bader: Editorial: Special Section on High-Performance Computational Biology. IEEE Trans. Parallel Distrib. Syst. 17(8): 737-739 (2006)
47		Anantharaman Kalyanaraman, Srinivas Aluru: Efficient Algorithms and Software for Detection of Full-length Ltr Retrotransposons. J. Bioinformatics and Computational Biology 4(2): 197-216 (2006)
	2005
46		Benjamin G. Jackson, Srinivas Aluru, Patrick S. Schnable: Consensus Genetic Maps: A Graph Theoretic Approach. CSB 2005: 35-43
45		Anantharaman Kalyanaraman, Srinivas Aluru: Efficient Algorithms and Software for Detection of Full-Length LTR Retrotransposons. CSB 2005: 56-64
44		Zhenhui Shen, Srinivas Aluru, Srikanta Tirthapura: Indexing for Subscription Covering in Publish-Subscribe Systems. ISCA PDCS 2005: 328-333
43		Rama Sangireddy, Natsuhiko Futamura, Srinivas Aluru, Arun K. Somani: Scalable, memory efficient, high-speed IP lookup algorithms. IEEE/ACM Trans. Netw. 13(4): 802-812 (2005)
42		Sudip Seal, Srikanth Komarina, Srinivas Aluru: An optimal hierarchical clustering algorithm for gene expression data. Inf. Process. Lett. 93(3): 143-147 (2005)
41		Pang Ko, Srinivas Aluru: Space efficient linear time construction of suffix arrays. J. Discrete Algorithms 3(2-4): 143-156 (2005)
40		Fatih Erdogan Sevilgen, Srinivas Aluru, Natsuhiko Futamura: Parallel algorithms for tree accumulations. J. Parallel Distrib. Comput. 65(1): 85-93 (2005)
39		Bhanu Hariharan, Srinivas Aluru: Efficient parallel algorithms and software for compressed octrees with applications to hierarchical methods. Parallel Computing 31(3-4): 311-331 (2005)
	2004
38		Pang Ko, Mahesh Narayanan, Anantharaman Kalyanaraman, Srinivas Aluru: Space-Conserving Optimal DNA-Protein Alignment . CSB 2004: 80-88
37		Srinivas Aluru, Fatih Erdogan Sevilgen: Efficient Methods for Database Storage and Retrieval Using Space-Filling Curves. ISCIS 2004: 503-512
36		Meng-Shiou Wu, Ricky A. Kendall, Srinivas Aluru: A tunable collective communication framework on a cluster of SMPS. Parallel and Distributed Computing and Networks 2004: 56-63
35		Scott J. Emrich, Srinivas Aluru, Yan Fu, Tsui-Jung Wen, Mahesh Narayanan, Ling Guo, Daniel A. Ashlock, Patrick S. Schnable: A strategy for assembling the maize (Zea mays L.) genome. Bioinformatics 20(2): 140-147 (2004)
34		David A. Bader, Srinivas Aluru: Special Issue: High Performance Computational Biology. Concurrency - Practice and Experience 16(9): 817-821 (2004)
33		Stjepan Rajko, Srinivas Aluru: Space and Time Optimal Parallel Sequence Alignments. IEEE Trans. Parallel Distrib. Syst. 15(12): 1070-1081 (2004)
	2003
32		Pang Ko, Srinivas Aluru: Space Efficient Linear Time Construction of Suffix Arrays. CPM 2003: 200-210
31		Stjepan Rajko, Srinivas Aluru: Space and Time Optimal Parallel Sequence Alignments. ICPP 2003: 39-47
30		Srinivas Aluru, Natsuhiko Futamura, Kishan Mehrotra: Parallel biological sequence comparison using prefix computations. J. Parallel Distrib. Comput. 63(3): 264-272 (2003)
29		Srinivas Aluru, David A. Bader: Guest Editor's Introduction: Special issue on high-performance computational biology. J. Parallel Distrib. Comput. 63(7-8): 671-673 (2003)
28		Natsuhiko Futamura, Srinivas Aluru, Xiaoqiu Huang: Parallel Syntenic Alignments. Parallel Processing Letters 13(4): 689-703 (2003)
	2002
27		Meng-Shiou Wu, Srinivas Aluru, Ricky A. Kendall: Mixed Mode Matrix Multiplication. CLUSTER 2002: 195-
26		Natsuhiko Futamura, Srinivas Aluru, Xiaoqiu Huang: Parallel Syntenic Alignments. HiPC 2002: 420-430
25		Anantharaman Kalyanaraman, Srinivas Aluru, Suresh C. Kothari: Space and Time Efficient Parallel Algorithms and Software for EST Clustering. ICPP 2002: 331-
24		Anantharaman Kalyanaraman, Srinivas Aluru, Suresh C. Kothari: Parallel EST Clustering. IPDPS 2002
23		David A. Bader, Srinivas Aluru: Workshop Introduction. IPDPS 2002
22		Bhanu Hariharan, Srinivas Aluru, Balasubramaniam Shanker: A scalable parallel fast multipole method for analysis of scattering from perfect electrically conducting surfaces. SC 2002: 1-17
21		Natsuhiko Futamura, Srinivas Aluru, Desh Ranjan, Bhanu Hariharan: Efficient Parallel Algorithms for Solvent Accessible Surface Area of Proteins. IEEE Trans. Parallel Distrib. Syst. 13(6): 544-555 (2002)
	2001
20		Bhanu Hariharan, Srinivas Aluru: Efficient Parallel Algorithms and Software for Compressed Octrees with Applications to Hierarchical Methods. HiPC 2001: 125-136
	2000
19		Fatih Erdogan Sevilgen, Natsuhiko Futamura, Srinivas Aluru: A Provably Optimal, Distribution-Independent Parallel Fast Multipole Method. IPDPS 2000: 77-84
18		Ibraheem Al-Furaih, Srinivas Aluru, Sanjay Goil, Sanjay Ranka: Parallel Construction of Multidimensional Binary Search Trees. IEEE Trans. Parallel Distrib. Syst. 11(2): 136-148 (2000)
	1999
17		Srinivas Aluru, Fatih Erdogan Sevilgen: Dynamic Compressed Hypertoctrees with Application to the N-Body Problem. FSTTCS 1999: 21-33
16		Srinivas Aluru, Desh Ranjan, Natsuhiko Futamura: A Parallel Monte Carlo Algorithm for Protein Accessible Surface Area Computation. HiPC 1999: 339-348
15		Srinivas Aluru, Natsuhiko Futamura, Kishan Mehrotra: Parallel Biological Sequence Comparison Using Prefix Computations. IPPS/SPDP 1999: 653-659
14		Srinivas Aluru, Songrit Maneewongvatana: A Practical Parallel Algorithm for Line Segment Visibility. PDPTA 1999: 1676-1682
	1998
13		Srinivas Aluru, John L. Gustafson, Gurpur M. Prabhu, Fatih Erdogan Sevilgen: Distribution-Independent Hierarchical Algorithms for the N-body Problem. The Journal of Supercomputing 12(4): 303-323 (1998)
	1997
12		Ibraheem Al-Furaih, Srinivas Aluru, Sanjay Goil, Sanjay Ranka: Practical Algorithms for Selection on Coarse-Grained Parallel Computers. IEEE Trans. Parallel Distrib. Syst. 8(8): 813-824 (1997)
11		Srinivas Aluru: Lagged Fibonacci Random Number Generators for Distributed Memory Parallel Computers. J. Parallel Distrib. Comput. 45(1): 1-12 (1997)
	1996
10		Ibraheem Al-Furaih, Srinivas Aluru, Sanjay Goil, Sanjay Ranka: Practical Algorithms for Selection on Coarse-Grained Parallel Computers. IPPS 1996: 309-313
9		Srinivas Aluru: Parallel Additive Lagged Fibonacci Random Number Generators. International Conference on Supercomputing 1996: 102-108
8		Ibraheem Al-Furaih, Srinivas Aluru, Sanjay Goil, Sanjay Ranka: Parallel Construction of Multidimensional Binary Search Trees. International Conference on Supercomputing 1996: 205-212
7		Srinivas Aluru, Songrit Maneewongvatana: Practical Paralle1 Algorithm for Constructing Line Arrangements. PDPTA 1996: 125-135
6		John L. Gustafson, Srinivas Aluru: Massively Parallel Searching for Better Algorithms or How to Do a Cross Product with Five Multiplications. Scientific Programming 5(3): 203-217 (1996)
	1995
5		Srinivas Aluru: Properties of Binomial Coefficients and Implications to Parallelizing Lagged Fibonacci Random Number Generators. ICPP (3) 1995: 25-28
	1994
4		Srinivas Aluru, Gurpur M. Prabhu, John L. Gustafson: Truly distribution-independent algorithms for the N-body problem. SC 1994: 420-428
	1993
3		Srinivas Aluru, John L. Gustafson: A Massively Parallel Optimizer for Expression Evaluation. International Conference on Supercomputing 1993: 97-106
2		Srinivas Aluru, John L. Gustafson: Subtle Issues of SIMD Tree Search. PARCO 1993: 49-56
	1992
1		Srinivas Aluru, Gurpur M. Prabhu, John L. Gustafson: A random number generator for parallel computers. Parallel Computing 18(8): 839-847 (1992)

Coauthor Index

1	Ibraheem Al-Furaih	[8] [10] [12] [18]
2	Maneesha Aluru	[70] [79]
3	Nancy M. Amato	[48]
4	Daniel A. Ashlock (Daniel Ashlock, Dan Ashlock)	[35]
5	Andrew Baczewzki	[73]
6	David A. Bader	[23] [29] [34] [48] [49] [59] [63] [82] [90]
7	Ramamurthy Badrinath	[61]
8	Sanghamitra Bandyopadhyay	[95]
9	Guillaume Blin	[96]
10	Rajkumar Buyya	[77]
11	Ümit V. Çatalyürek	[95]
12	Anna Ceguerra	[69]
13	Sharat Chandran	[67]
14	Wen-Chieh Chang	[78]
15	Yeh-Ching Chung	[77]
16	Karin S. Dorman	[80] [93]
17	Sumeet Dua	[77]
18	Devdatt P. Dubhashi	[95]
19	Scott J. Emrich	[35] [51] [54] [57]
20	Oliver Eulenstein	[78]
21	Yan Fu	[35]
22	Natsuhiko Futamura	[15] [16] [19] [21] [26] [28] [30] [40] [43]
23	Sanjay Goil	[8] [10] [12] [18]
24	Ananth Grama	[77]
25	Ling Guo	[35]
26	Sandeep K. S. Gupta	[77]
27	John L. Gustafson	[1] [2] [3] [4] [6] [13]
28	Sylvie Hamel	[96]
29	Bhanu Hariharan	[20] [21] [22] [39]
30	Xiaoqiu Huang	[26] [28]
31	Benjamin G. Jackson	[46] [64] [68] [72] [76] [83]
32	Daniel Janies	[62]
33	Andrew Janowczyk	[67]
34	Andrew D. Johnson	[62]
35	Phillip H. Jones	[95]
36	Anantharaman Kalyanaraman (Ananth Kalyanaraman)	[24] [25] [38] [45] [47] [49] [51] [54] [57] [59] [90]
37	George Karypis	[82]
38	Ricky A. Kendall	[27] [36]
39	Pang Ko	[32] [38] [41] [53] [55]
40	Srikanth Komarina	[42]
41	Suresh C. Kothari	[24] [25]
42	Rajeev Kumar	[77]
43	Songrit Maneewongvatana	[7] [14]
44	Kishan G. Mehrotra (Kishan Mehrotra)	[15] [30]
45	Michael Moody	[69]
46	Mahesh Narayanan	[35] [38]
47	Olga Nikolova	[75] [92]
48	Michael Ott	[56] [62]
49	Manish Parashar	[61] [95]
50	Vir V. Phoha	[77]
51	Gurpur M. Prabhu	[1] [4] [13]
52	Viktor K. Prasanna (V. K. Prasanna Kumar)	[61]
53	Krishna Rajan	[69]
54	Stjepan Rajko	[31] [33]
55	Abhiram Ranade	[94]
56	Desh Ranjan	[16] [21]
57	Sanjay Ranka	[8] [10] [12] [18] [77]
58	Matthew Regennitter	[83]
59	Simon Ringer	[69]
60	Romeo Rizzi	[96]
61	Adrian Rospondek	[58]
62	Rama Sangireddy	[43]
63	Abhinav Sarje	[66] [71] [74] [79] [81] [86]
64	William Sarje	[84]
65	Bertil Schmidt	[95]
66	Patrick S. Schnable	[35] [46] [51] [54] [64] [72] [76] [83]
67	Sudip Seal	[42] [50] [52] [69]
68	Fatih Erdogan Sevilgen	[13] [17] [19] [37] [40]
69	B. Shanker	[73]
70	Balasubramaniam Shanker	[22]
71	Zhenhui Shen	[44]
72	Florian Sikora	[96]
73	Arun K. Somani	[43]
74	Alexandros Stamatakis	[56] [62]
75	Srikanta Tirthapura	[44] [52]
76	Aditya Varma	[94]
77	Melapudi Vikram	[73]
78	André Wehe	[78]
79	Tsui-Jung Wen	[35]
80	Meng-Shiou Wu	[27] [36]
81	Xiao Yang	[58] [80] [83] [85] [91] [93] [96]
82	Jaroslaw Zola	[56] [58] [62] [70] [74] [75] [79] [86] [88] [91]

Colors in the list of coauthors

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