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Russ B. Altman Coauthor index pubzone.org

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116Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLNicholas P. Tatonetti, Guy Haskin Fernald, Russ B. Altman: A novel signal detection algorithm for identifying hidden drug-drug interactions in adverse event reports. JAMIA 19(1): 79-85 (2012)
115Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLScott L. Delp, Joy P. Ku, Vijay S. Pande, Michael A. Sherman, Russ B. Altman: Simbios: an NIH national center for physics-based simulation of biological structures. JAMIA 19(2): 186-189 (2012)
2011
114no EE pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLRuss B. Altman, A. Keith Dunker, Lawrence Hunter, Tiffany Murray, Teri E. Klein: Biocomputing 2011: Proceedings of the Pacific Symposium, Kohala Coast, Hawaii, USA, 3-7 January 2011 World Scientific Publishing 2011
113Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLSamuel Coulbourn Flores, Russ B. Altman: Structural insights into Pre-Translocation Ribosome Motions. Pacific Symposium on Biocomputing 2011: 205-216
112Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLKai J. Kohlhoff, Marc H. Sosnick, William T. Hsu, Vijay S. Pande, Russ B. Altman: CAMPAIGN: an open-source library of GPU-accelerated data clustering algorithms. Bioinformatics 27(16): 2321-2322 (2011)
111Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLGuy Haskin Fernald, Emidio Capriotti, Roxana Daneshjou, Konrad J. Karczewski, Russ B. Altman: Bioinformatics challenges for personalized medicine. Bioinformatics 27(16): 2323 (2011)
110Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLGuy Haskin Fernald, Emidio Capriotti, Roxana Daneshjou, Konrad J. Karczewski, Russ B. Altman: Genome Analysis. Bioinformatics [ISMB/ECCB] 27(13): 1741-1748 (2011)
109Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLSamuel Coulbourn Flores, Michael A. Sherman, Christopher M. Bruns, Peter Eastman, Russ B. Altman: Fast Flexible Modeling of RNA Structure Using Internal Coordinates. IEEE/ACM Trans. Comput. Biology Bioinform. 8(5): 1247-1257 (2011)
108Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLRuss B. Altman, Katharine S. Miller: 2010 Translational bioinformatics year in review. JAMIA 18(4): 358-366 (2011)
107Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLTianyun Liu, Russ B. Altman: Using Multiple Microenvironments to Find Similar Ligand-Binding Sites: Application to Kinase Inhibitor Binding. PLoS Computational Biology 7(12): (2011)
2010
106no EE pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLRuss B. Altman, A. Keith Dunker, Lawrence Hunter, Tiffany Murray, Teri E. Klein: Biocomputing 2010: Proceedings of the Pacific Symposium, Kamuela, Hawaii, USA, 4-8 January 2010 World Scientific Publishing 2010
105Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLSamuel Flores, Yaqi Wan, Rick Russell, Russ B. Altman: Predicting RNA Structure by Multiple Template Homology Modeling. Pacific Symposium on Biocomputing 2010: 216-227
104Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLYael Garten, Nicholas P. Tatonetti, Russ B. Altman: Improving the Prediction of Pharmacogenes Using Text-Derived Gene-Drug Relationships. Pacific Symposium on Biocomputing 2010: 305-314
103Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLAdrien Coulet, Nigam H. Shah, Lawrence Hunter, Chitta Baral, Russ B. Altman: Extraction of Genotype-Phenotype-Drug Relationships from Text: From Entity Recognition to Bioinformatics Application. Pacific Symposium on Biocomputing 2010: 485-487
102Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLJesse M. Engreitz, Alexander A. Morgan, Joel Dudley, Rong Chen, Rahul Thathoo, Russ B. Altman, Atul J. Butte: Content-based microarray search using differential expression profiles. BMC Bioinformatics 11: 603 (2010)
101Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLRuss B. Altman: Editorial: Current progress in Bioinformatics 2010. Briefings in Bioinformatics 11(1): 1-2 (2010)
100Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLHersh Sagreiya, Russ B. Altman: The utility of general purpose versus specialty clinical databases for research: Warfarin dose estimation from extracted clinical variables. Journal of Biomedical Informatics 43(5): 747-751 (2010)
99Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLAdrien Coulet, Nigam H. Shah, Yael Garten, Mark A. Musen, Russ B. Altman: Using text to build semantic networks for pharmacogenomics. Journal of Biomedical Informatics 43(6): 1009-1019 (2010)
98Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLJesse M. Engreitz, Bernie J. Daigle Jr., Jonathan J. Marshall, Russ B. Altman: Independent component analysis: Mining microarray data for fundamental human gene expression modules. Journal of Biomedical Informatics 43(6): 932-944 (2010)
97Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLBernie J. Daigle Jr., Alicia Deng, Tracey McLaughlin, Samuel W. Cushman, Margaret C. Cam, Gerald Reaven, Philip S. Tsao, Russ B. Altman: Using Pre-existing Microarray Datasets to Increase Experimental Power: Application to Insulin Resistance. PLoS Computational Biology 6(3): (2010)
2009
96no EE pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLDoheon Lee, Russ B. Altman, Min Song, Jun Huan: Proceeding of the 3rd International Workshop on Data and Text Mining in Bioinformatics, DTMBIO 2009, Hong Kong, China, November 6, 2009 ACM 2009
95no EE pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLRuss B. Altman, A. Keith Dunker, Lawrence Hunter, Tiffany Murray, Teri E. Klein: Biocomputing 2009: Proceedings of the Pacific Symposium, Kohala Coast, Hawaii, USA, 5-9 January 2009 Pacific Symposium on Biocomputing 2009
94Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLShai Shen-Orr, Ofir Goldberger, Yael Garten, Yael Rosenberg-Hasson, Patricia A. Lovelace, David Hirschberg, Russ B. Altman, Mark M. Davis, Atul J. Butte: Towards a Cytokine-Cell Interaction Knowledgebase of the Adaptive Immune System. Pacific Symposium on Biocomputing 2009: 439-450
93Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLYael Garten, Russ B. Altman: Pharmspresso: a text mining tool for extraction of pharmacogenomic concepts and relationships from full text. BMC Bioinformatics 10(S-2): (2009)
92Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLMagdalena A. Jonikas, Randall J. Radmer, Russ B. Altman: Knowledge-based instantiation of full atomic detail into coarse-grain RNA 3D structural models. Bioinformatics 25(24): 3259-3266 (2009)
2008
91no EE pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLRuss B. Altman, A. Keith Dunker, Lawrence Hunter, Tiffany Murray, Teri E. Klein: Biocomputing 2008, Proceedings of the Pacific Symposium, Kohala Coast, Hawaii, USA, 4-8 January 2008 World Scientific 2008
90Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLRuss B. Altman: Text mining for pharmacogenomics. DTMBIO 2008: 1-2
89Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLDariya S. Glazer, Randall J. Radmer, Russ B. Altman: Combining Molecular Dynamics and Machine Learning to Improve Protein Function Recognition. Pacific Symposium on Biocomputing 2008: 332-343
88Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLBernie J. Daigle Jr., Russ B. Altman: M-BISON: Microarray-based integration of data sources using networks. BMC Bioinformatics 9: (2008)
87Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLGraham L. Poulter, Daniel L. Rubin, Russ B. Altman, Cathal Seoighe: MScanner: a classifier for retrieving Medline citations. BMC Bioinformatics 9: (2008)
86Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPeggy Yao, Ankur Dhanik, Nathan Marz, Ryan Propper, Charles Kou, Guanfeng Liu, Henry van den Bedem, Jean-Claude Latombe, Inbal Halperin-Landsberg, Russ B. Altman: Efficient Algorithms to Explore Conformation Spaces of Flexible Protein Loops. IEEE/ACM Trans. Comput. Biology Bioinform. 5(4): 534-545 (2008)
85Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLTina Hernandez-Boussard, Michelle Whirl Carrillo, Joan M. Hebert, Li Gong, Ryan Owen, Mei Gong, Winston Gor, Feng Liu, Chuong Truong, Ryan Whaley, Mark Woon, Tina Zhou, Russ B. Altman, Teri E. Klein: The pharmacogenetics and pharmacogenomics knowledge base: accentuating the knowledge. Nucleic Acids Research 36(Database-Issue): 913-918 (2008)
2007
84no EE pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLRuss B. Altman, A. Keith Dunker, Lawrence Hunter, Tiffany Murray, Teri E. Klein: Biocomputing 2007, Proceedings of the Pacific Symposium, Maui, Hawaii, USA, 3-7 January 2007 World Scientific 2007
83Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLRuss B. Altman: Combining Simulation and Machine Learning to Recognize Function in 4D. BIBM 2007: 3
82Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLRong Xu, Yael Garten, Kaustubh S. Supekar, Amar K. Das, Russ B. Altman, Alan M. Garber: Extracting Subject Demographic Information From Abstracts of Randomized Clinical Trial Reports. MedInfo 2007: 550-554
81Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLSungroh Yoon, Jessica C. Ebert, Eui-Young Chung, Giovanni De Micheli, Russ B. Altman: Clustering protein environments for function prediction: finding PROSITE motifs in 3D. BMC Bioinformatics 8(S-4): (2007)
80Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLRuss B. Altman: Current progress in bioinformatics 2007. Briefings in Bioinformatics 8(5): 277-278 (2007)
79Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLRuss B. Altman, Teri E. Klein: Biomedical informatics training at Stanford in the 21st century. Journal of Biomedical Informatics 40(1): 55-58 (2007)
78Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLLawrence Hunter, Russ B. Altman, Philip E. Bourne: The International Society for Computational Biology 10th Anniversary. PLoS Computational Biology 3(6): (2007)
2006
77no EE pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLRuss B. Altman, Tiffany Murray, Teri E. Klein, A. Keith Dunker, Lawrence Hunter: Biocomputing 2006, Proceedings of the Pacific Symposium, Maui, Hawaii, USA, 3-7 January 2006 World Scientific 2006
76Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLScott L. Delp, F. Clayton Anderson, Russ B. Altman: Physics-based simulation of biological structures. ISBI 2006: 802-805
75Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLRuss B. Altman: Annual Progress in Bioinformatics 2006. Briefings in Bioinformatics 7(3): 209-210 (2006)
74Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLTu Minh Phuong, Zhen Lin, Russ B. Altman: Choosing Snps Using Feature Selection. J. Bioinformatics and Computational Biology 4(2): 241-258 (2006)
73Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLNicola Cannata, Emanuela Merelli, Russ B. Altman: Correction: Time to Organize the Bioinformatics Resourceome. PLoS Computational Biology 2(2): (2006)
2005
72no EE pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLRuss B. Altman, Tiffany A. Jung, Teri E. Klein, A. Keith Dunker, Lawrence Hunter: Biocomputing 2005, Proceedings of the Pacific Symposium, Hawaii, USA, 4-8 January 2005 World Scientific 2005
71Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLRuss B. Altman: Challenges in Creating an Infrastructure for Physics-Based Simulation of Biological Structures. CSB 2005: 3
70Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLTu Minh Phuong, Zhen Lin, Russ B. Altman: Choosing SNPs Using Feature Selection. CSB 2005: 301-309
69Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLRuss B. Altman, A. Keith Dunker, Lawrence Hunter, Teri E. Klein: Preface. Pacific Symposium on Biocomputing 2005
68Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLRuss B. Altman: Editorial: Annual progress in bioinformatics. Briefings in Bioinformatics 6(1): 4-5 (2005)
67Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLDaniel L. Rubin, Caroline F. Thorn, Teri E. Klein, Russ B. Altman: Application of Information Technology: A Statistical Approach to Scanning the Biomedical Literature for Pharmacogenetics Knowledge. JAMIA 12(2): 121-129 (2005)
66Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLMor Peleg, Daniel L. Rubin, Russ B. Altman: Research Paper: Using Petri Net Tools to Study Properties and Dynamics of Biological Systems. JAMIA 12(2): 181-199 (2005)
65Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLJonathan D. Wren, Jeffrey T. Chang, James Pustejovsky, Eytan Adar, Harold R. Garner, Russ B. Altman: Biomedical term mapping databases. Nucleic Acids Research 33(Database-Issue): 289-293 (2005)
64Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLNicola Cannata, Emanuela Merelli, Russ B. Altman: Time to Organize the Bioinformatics Resourceome. PLoS Computational Biology 1(7): (2005)
2004
63no EE pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLRuss B. Altman, A. Keith Dunker, Lawrence Hunter, Tiffany A. Jung, Teri E. Klein: Biocomputing 2004, Proceedings of the Pacific Symposium, Hawaii, USA, 6-10 January 2004 World Scientific 2004
62Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLRuss B. Altman, A. Keith Dunker, Lawrence Hunter, Teri E. Klein: Preface. Pacific Symposium on Biocomputing 2004
61Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLDiane E. Oliver, Gaurav Bhalotia, Ariel S. Schwartz, Russ B. Altman, Marti A. Hearst: Tools for loading MEDLINE into a local relational database. BMC Bioinformatics 5: 146 (2004)
60Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLJeffrey T. Chang, Hinrich Schütze, Russ B. Altman: GAPSCORE: finding gene and protein names one word at a time. Bioinformatics 20(2): 216-225 (2004)
59Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLRuss B. Altman: Editorial: Building successful biological databases. Briefings in Bioinformatics 5(1): 4 (2004)
2003
58Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLShuo Liu, Steve Lin, Mark Woon, Teri E. Klein, Russ B. Altman: A Personalized and Automated dbSNP Surveillance System. CSB 2003: 132-136
57Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLMike P. Liang, Douglas L. Brutlag, Russ B. Altman: Automatic Construction of 3D Structural Motifs for Protein Function Prediction. CSB 2003: 613-614
56Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLMike P. Liang, Douglas L. Brutlag, Russ B. Altman: Automated Construction of Structural Motifs for Predicting Functional Sites on Protein Structures. Pacific Symposium on Biocomputing 2003: 204-215
55Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLRuss B. Altman, A. Keith Dunker, Lawrence Hunter, Teri E. Klein: Preface. Pacific Symposium on Biocomputing 2003
54Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLRuss B. Altman, A. Keith Dunker, Lawrence Hunter, Teri E. Klein: Special Paper - Introduction. Pacific Symposium on Biocomputing 2003: 636-637
53Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLMiles Osborne, Mark Cuminskey, Gail Sinclair, Matthew Smillie, Bonnie L. Webber, Jeffrey T. Chang, Nipun Mehra, Veronica Rotemberg, Russ B. Altman: Edinburgh-Stanford TREC-2003 Genomics Track. TREC 2003: 622-630
52Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLSean D. Mooney, Russ B. Altman: MutDB: annotating human variation with functionally relevant data. Bioinformatics 19(14): 1858-1860 (2003)
51Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLIwei Yeh, Peter D. Karp, Natalya Fridman Noy, Russ B. Altman: Knowledge acquisition, consistency checking and concurrency control for Gene Ontology (GO). Bioinformatics 19(2): 241-248 (2003)
50Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLSoumya Raychaudhuri, Russ B. Altman: A literature-based method for assessing the functional coherence of a gene group. Bioinformatics 19(3): 396-401 (2003)
49Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLLiping Wei, Russ B. Altman: Recognizing Complex, Asymmetric Functional Sites in Protein Structures Using a Bayesian Scoring Function. J. Bioinformatics and Computational Biology 1(1): 119-138 (2003)
48Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLSoumya Raychaudhuri, Hinrich Schütze, Russ B. Altman: Inclusion of Textual Documentation in the Analysis of Multidimensional Data Sets: Application to Gene Expression Data. Machine Learning 52(1-2): 119-145 (2003)
47Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLMike P. Liang, D. Rey Banatao, Teri E. Klein, Douglas L. Brutlag, Russ B. Altman: WebFEATURE: an interactive web tool for identifying and visualizing functional sites on macromolecular structures. Nucleic Acids Research 31(13): 3324-3327 (2003)
46Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLRuss B. Altman: Complexities of Managing Biomedical Information. OMICS 7(1): 127-130 (2003)
2002
45no EE pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLDaniel L. Rubin, Farhad Shafa, Diane E. Oliver, Micheal Hewett, Russ B. Altman: Representing genetic sequence data for pharmacogenomics: an evolutionary approach using ontological and relational models. ISMB 2002: 207-215
44Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLDiane E. Oliver, Daniel L. Rubin, Joshua M. Stuart, Micheal Hewett, Teri E. Klein, Russ B. Altman: Ontology Development for a Pharmacogenetics Knowledge Base. Pacific Symposium on Biocomputing 2002: 65-76
43Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLDaniel L. Rubin, Micheal Hewett, Diane E. Oliver, Teri E. Klein, Russ B. Altman: Automating Data Acquisition into Ontologies from Pharmacogenetics Relational Data Sources Using Declarative Object Definitions and XML. Pacific Symposium on Biocomputing 2002: 88-99
42Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLRuss B. Altman, A. Keith Dunker, Lawrence Hunter, Teri E. Klein: Preface. Pacific Symposium on Biocomputing 2002
41Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLOlga G. Troyanskaya, Mitchell E. Garber, Patrick O. Brown, David Botstein, Russ B. Altman: Nonparametric methods for identifying differentially expressed genes in microarray data. Bioinformatics 18(11): 1454-1461 (2002)
40Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLMor Peleg, Iwei Yeh, Russ B. Altman: Modelling biological processes using workflow and Petri Net models. Bioinformatics 18(6): 825-837 (2002)
39Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLJiawei Han, Russ B. Altman, Vipin Kumar, Heikki Mannila, Daryl Pregibon: Emerging scientific applications in data mining. Commun. ACM 45(8): 54-58 (2002)
38Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLMicheal Hewett, Diane E. Oliver, Daniel L. Rubin, Katrina L. Easton, Joshua M. Stuart, Russ B. Altman, Teri E. Klein: PharmGKB: the Pharmacogenetics Knowledge Base. Nucleic Acids Research 30(1): 163-165 (2002)
2001
37Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLRuss B. Altman: Challenges for knowledge discovery in biology. KDD 2001: 2
36Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLD. Rey Banatao, Conrad C. Huang, Patricia C. Babbitt, Russ B. Altman, Teri E. Klein: ViewFeature: Integrated Feature Analysis and Visualization. Pacific Symposium on Biocomputing 2001: 240-250
35Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLAllison Waugh, Glenn A. Williams, Liping Wei, Russ B. Altman: Using Metacomputing Tools to Facilitate Large Scale Analyses of Biological Databases. Pacific Symposium on Biocomputing 2001: 360-371
34Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLJeffrey T. Chang, Soumya Raychaudhuri, Russ B. Altman: Including Biological Literature Improves Homology Search. Pacific Symposium on Biocomputing 2001: 374-383
33Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLOlga G. Troyanskaya, Michael Cantor, Gavin Sherlock, Patrick O. Brown, Trevor Hastie, Robert Tibshirani, David Botstein, Russ B. Altman: Missing value estimation methods for DNA microarrays. Bioinformatics 17(6): 520-525 (2001)
32Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLRuss B. Altman, Alfonso Valencia, Satoru Miyano, Shoba Ranganathan: Challenges for Intelligent Systems in Biology. IEEE Intelligent Systems 16(6): 14-20 (2001)
31no EE pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLGlenn A. Williams, Jonathan M. Dugan, Russ B. Altman: Constrained Global Optimization for Estimating Molecular Structure from Atomic Distances. Journal of Computational Biology 8(5): 523-548 (2001)
2000
30no EE pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPhilip E. Bourne, Michael Gribskov, Russ B. Altman, Nancy Jensen, Debra A. Hope, Thomas Lengauer, Julie C. Mitchell, Eric D. Scheeff, Chris Smith, Shawn Strande, Helge Weissig: Proceedings of the Eighth International Conference on Intelligent Systems for Molecular Biology, August 19-23, 2000, La Jolla / San Diego, CA, USA AAAI 2000
29no EE pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLSoumya Raychaudhuri, Joshua M. Stuart, Xuemin Liu, Peter M. Small, Russ B. Altman: Pattern Recognition of Genomic Features with Microarrays: Site Typing of Mycobacterium Tuberculosis Strains. ISMB 2000: 286-295
1999
28no EE pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLCheng Che Chen, Jaswinder Pal Singh, Russ B. Altman: Biomolecular Structure Estimation: A Case Study of Irregular Hierarchical Parallelism. PPSC 1999
27Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLRuss B. Altman: AI in Medicine: The Spectrum of Challenges from Managed Care to Molecular Medicine. AI Magazine 20(3): 67-77 (1999)
26Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLCheng Che Chen, Jaswinder Pal Singh, Russ B. Altman: Using imperfect secondary structure predictions to improve molecular structure computations. Bioinformatics 15(1): 53-65 (1999)
25no EE pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLRuss B. Altman, Michael Bada, Xiaoqian J. Chai, Michelle Whirl Carrillo, Richard O. Chen, Neil F. Abernethy: RiboWeb: An Ontology-Based System for Collaborative Molecular Biology. IEEE Intelligent Systems 14(5): 68-76 (1999)
1998
24no EE pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLJeanette P. Schmidt, Cheng Che Chen, Jonathan L. Cooper, Russ B. Altman: A Surface Measure for Probabilistic Structural Computations. ISMB 1998: 148-156
23Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLNeil F. Abernethy, Russ B. Altman: Sophia: Providing Basic Knowledge Services with a Common DBMS. KRDB 1998: 1.1-1.6
22Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLCheng Che Chen, Jaswinder Pal Singh, Russ B. Altman: The hierarchical organization of molecular structure computations. RECOMB 1998: 51-59
21Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLRuss B. Altman: A curriculum for bioinformatics: the time is ripe. Bioinformatics 14(7): 549-550 (1998)
20Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLJohn H. Gennari, Heyning Cheng, Russ B. Altman, Mark A. Musen: Reuse, CORBA, and knowledge-based systems. Int. J. Hum.-Comput. Stud. 49(4): 523-546 (1998)
19no EE pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLCheng Che Chen, Jaswinder Pal Singh, Russ B. Altman: Hierarchical Organization of Molecular Structure Computations. Journal of Computational Biology 5(3): 409-422 (1998)
1997
18no EE pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLRuss B. Altman, Neil F. Abernethy, Richard O. Chen: Standardized Representations of the Literature: Combining Diverse Sources of Ribosomal Data. ISMB 1997: 15-24
17no EE pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLRichard O. Chen, Ramon M. Felciano, Russ B. Altman: RIBOWEB: Linking Structural Computations to a Knowledge Base of Published Experimental Data. ISMB 1997: 84-87
1996
16Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLCheng Che Chen, Richard O. Chen, Russ B. Altman: Constraining volume by matching the moments of a distance distribution. Computer Applications in the Biosciences 12(4): 319-326 (1996)
1995
15no EE pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLChristopher J. Rawlings, Dominic A. Clark, Russ B. Altman, Lawrence Hunter, Thomas Lengauer, Shoshana J. Wodak: Proceedings of the Third International Conference on Intelligent Systems for Molecular Biology, Cambridge, United Kingdom, July 16-19, 1995 AAAI 1995
14no EE pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLSteven C. Bagley, Liping Wei, Carol Cheng, Russ B. Altman: Characterizing Oriented Protein Structural Sites Using Biochemical Properties. ISMB 1995: 12-20
13no EE pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLJohn H. Gennari, Russ B. Altman, Mark A. Musen: Reuse with PROTÉgÉ-II: From Elevators to Ribosomes. SSR 1995: 72-80
12Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLMark Gerstein, Russ B. Altman: Using a measure of structural variation to define a core for the globins. Computer Applications in the Biosciences 11(6): 633-644 (1995)
11Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLRuss B. Altman: A probabilistic approach to determining biological structure: integrating uncertain data sources. Int. J. Hum.-Comput. Stud. 42(6): 593-616 (1995)
1994
10no EE pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLRuss B. Altman, Douglas L. Brutlag, Peter D. Karp, Richard H. Lathrop, David B. Searls: Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, August 14-17, 1994, Stanford University, Stanford, California, USA AAAI 1994
9no EE pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLRuss B. Altman, Bryn Weiser, Harry F. Noller: Constraint Satisfaction Techniques for Modeling Large Complexes: Application to the Central Domain of 16S Ribosomal RNA. ISMB 1994: 10-18
8no EE pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLRuss B. Altman, Mark Gerstein: Finding an Average Core Structure: Application to the Globins. ISMB 1994: 19-27
7Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLCheng Che Chen, Jaswinder Pal Singh, William B. Poland, Russ B. Altman: Parallel protein structure determination from uncertain data. SC 1994: 570-579
6Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLRuss B. Altman, Cheng Che Chen, William B. Poland, Jaswinder Pal Singh: Probabilistic Constraint Satisfaction with Non-Gaussian Noise. UAI 1994: 15-22
1993
5no EE pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLRuss B. Altman: Probabilistic Structure Calculations: A Three-Dimensional tRNA Structure from Sequence Correlation Data. ISMB 1993: 12-20
4Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLRuss B. Altman: A Probabilistic Algorithm for Calculating Structure: Borrowing from Simulated Annealing. UAI 1993: 23-31
1988
3Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLJames F. Brinkley, Russ B. Altman, Bruce S. Duncan, Bruce G. Buchanan, Oleg Jardetzky: Heuristic refinement method for the derivation of protein solution structures: validation on cytochrome b562. Journal of Chemical Information and Computer Sciences 28(4): 194-210 (1988)
1987
2no EE pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLRuss B. Altman, Bruce G. Buchanan: Partial Compilation of Strategic Knowledge. AAAI 1987: 399-404
1986
1no EE pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLBarbara Hayes-Roth, Bruce G. Buchanan, Olivier Lichtarge, Mike Hewitt, Russ B. Altman, James F. Brinkley, Craig Cornelius, Bruce S. Duncan, Oleg Jardetzky: PROTEAN: Deriving Protein Structure from Constraints. AAAI 1986: 904-909

Coauthor Index

1Neil F. Abernethy [18] [23] [25]
2Eytan Adar [65]
3F. Clayton Anderson [76]
4Patricia C. Babbitt [36]
5Michael Bada [25]
6Steven C. Bagley [14]
7D. Rey Banatao [36] [47]
8Chitta Baral [103]
9Henry van den Bedem [86]
10Gaurav Bhalotia [61]
11David Botstein [33] [41]
12Philip E. Bourne [30] [78]
13James F. Brinkley [1] [3]
14Patrick O. Brown [33] [41]
15Christopher M. Bruns [109]
16Douglas L. Brutlag [10] [47] [56] [57]
17Bruce G. Buchanan [1] [2] [3]
18Atul J. Butte [94] [102]
19Margaret C. Cam [97]
20Nicola Cannata [64] [73]
21Michael Cantor [33]
22Emidio Capriotti [110] [111]
23Michelle Whirl Carrillo [25] [85]
24Xiaoqian J. Chai [25]
25Jeffrey T. Chang [34] [53] [60] [65]
26Cheng Che Chen [6] [7] [16] [19] [22] [24] [26] [28]
27Richard O. Chen [16] [17] [18] [25]
28Rong Chen [102]
29Carol Cheng [14]
30Heyning Cheng [20]
31Eui-Young Chung [81]
32Dominic A. Clark [15]
33Jonathan L. Cooper [24]
34Craig Cornelius [1]
35Adrien Coulet [99] [103]
36Mark Cuminskey [53]
37Samuel W. Cushman [97]
38Bernie J. Daigle Jr. [88] [97] [98]
39Roxana Daneshjou [110] [111]
40Amar K. Das [82]
41Mark M. Davis [94]
42Scott L. Delp [76] [115]
43Alicia Deng [97]
44Ankur Dhanik [86]
45Joel Dudley [102]
46Jonathan M. Dugan [31]
47Bruce S. Duncan [1] [3]
48A. Keith Dunker [42] [54] [55] [62] [63] [69] [72] [77] [84] [91] [95] [106] [114]
49Peter Eastman [109]
50Katrina L. Easton [38]
51Jessica C. Ebert [81]
52Jesse M. Engreitz [98] [102]
53Ramon M. Felciano [17]
54Guy Haskin Fernald [110] [111] [116]
55Samuel Flores (Samuel Coulbourn Flores) [105] [109] [113]
56Alan M. Garber [82]
57Mitchell E. Garber [41]
58Harold R. Garner [65]
59Yael Garten [82] [93] [94] [99] [104]
60John H. Gennari [13] [20]
61Mark Gerstein (Mark B. Gerstein) [8] [12]
62Dariya S. Glazer [89]
63Ofir Goldberger [94]
64Li Gong [85]
65Mei Gong [85]
66Winston Gor [85]
67Michael Gribskov [30]
68Inbal Halperin-Landsberg [86]
69Jiawei Han [39]
70Trevor Hastie [33]
71Barbara Hayes-Roth [1]
72Marti A. Hearst [61]
73Joan M. Hebert [85]
74Tina Hernandez-Boussard [85]
75Micheal Hewett [38] [43] [44] [45]
76Mike Hewitt [1]
77David Hirschberg [94]
78Debra A. Hope [30]
79William T. Hsu [112]
80Jun Huan (Luke Huan) [96]
81Conrad C. Huang [36]
82Lawrence Hunter [15] [42] [54] [55] [62] [63] [69] [72] [77] [78] [84] [91] [95] [103] [106] [114]
83Oleg Jardetzky [1] [3]
84Nancy Jensen [30]
85Magdalena A. Jonikas [92]
86Konrad J. Karczewski [110] [111]
87Peter D. Karp [10] [51]
88Teri E. Klein [36] [38] [42] [43] [44] [47] [54] [55] [58] [62] [63] [67] [69] [72] [77] [79] [84] [85] [91] [95] [106] [114]
89Kai J. Kohlhoff [112]
90Charles Kou [86]
91Joy P. Ku [115]
92Vipin Kumar [39]
93Richard H. Lathrop [10]
94Jean-Claude Latombe [86]
95Doheon Lee [96]
96Thomas Lengauer [15] [30]
97Mike P. Liang [47] [56] [57]
98Olivier Lichtarge [1]
99Steve Lin [58]
100Zhen Lin [70] [74]
101Feng Liu [85]
102Guanfeng Liu [86]
103Shuo Liu [58]
104Tianyun Liu [107]
105Xuemin Liu [29]
106Patricia A. Lovelace [94]
107Heikki Mannila [39]
108Jonathan J. Marshall [98]
109Nathan Marz [86]
110Tracey McLaughlin [97]
111Nipun Mehra [53]
112Emanuela Merelli [64] [73]
113Giovanni De Micheli [81]
114Katharine S. Miller [108]
115Julie C. Mitchell [30]
116Satoru Miyano [32]
117Sean D. Mooney [52]
118Alexander A. Morgan [102]
119Tiffany Murray (Tiffany A. Jung) [63] [72] [77] [84] [91] [95] [106] [114]
120Mark A. Musen [13] [20] [99]
121Harry F. Noller [9]
122Natalya Fridman Noy (Natasha Fridman Noy, Natasha F. Noy) [51]
123Diane E. Oliver [38] [43] [44] [45] [61]
124Miles Osborne [53]
125Ryan Owen [85]
126Vijay S. Pande [112] [115]
127Mor Peleg [40] [66]
128Tu Minh Phuong [70] [74]
129William B. Poland [6] [7]
130Graham L. Poulter [87]
131Daryl Pregibon [39]
132Ryan Propper [86]
133James Pustejovsky [65]
134Randall J. Radmer [89] [92]
135Shoba Ranganathan [32]
136Christopher J. Rawlings [15]
137Soumya Raychaudhuri [29] [34] [48] [50]
138Gerald Reaven [97]
139Yael Rosenberg-Hasson [94]
140Veronica Rotemberg [53]
141Daniel L. Rubin [38] [43] [44] [45] [66] [67] [87]
142Rick Russell [105]
143Hersh Sagreiya [100]
144Eric D. Scheeff [30]
145Jeanette P. Schmidt [24]
146Hinrich Schütze [48] [60]
147Ariel S. Schwartz [61]
148David B. Searls [10]
149Cathal Seoighe [87]
150Farhad Shafa [45]
151Nigam H. Shah (Nigam Shah, N. H. Shah) [99] [103]
152Shai Shen-Orr [94]
153Gavin Sherlock [33]
154Michael A. Sherman [109] [115]
155Gail Sinclair [53]
156Jaswinder Pal Singh [6] [7] [19] [22] [26] [28]
157Peter M. Small [29]
158Matthew Smillie [53]
159Chris Smith [30]
160Min Song [96]
161Marc H. Sosnick [112]
162Shawn Strande [30]
163Joshua M. Stuart [29] [38] [44]
164Kaustubh S. Supekar [82]
165Nicholas P. Tatonetti [104] [116]
166Rahul Thathoo [102]
167Caroline F. Thorn [67]
168Robert Tibshirani [33]
169Olga G. Troyanskaya [33] [41]
170Chuong Truong [85]
171Philip S. Tsao [97]
172Alfonso Valencia [32]
173Yaqi Wan [105]
174Allison Waugh [35]
175Bonnie L. Webber [53]
176Liping Wei [14] [35] [49]
177Bryn Weiser [9]
178Helge Weissig [30]
179Ryan Whaley [85]
180Glenn A. Williams [31] [35]
181Shoshana J. Wodak [15]
182Mark Woon [58] [85]
183Jonathan D. Wren [65]
184Rong Xu [82]
185Peggy Yao [86]
186Iwei Yeh [40] [51]
187Sungroh Yoon [81]
188Tina Zhou [85]

Colors in the list of coauthors

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