 | 2012 |
| 14 |  | Farhad Hormozdiari,
Faraz Hach,
Süleyman Cenk Sahinalp,
Evan E. Eichler,
Can Alkan:
Sensitive and fast mapping of di-base encoded reads.
Bioinformatics 28(1): 150 (2012) |
| 2011 |
| 13 |  | Can Alkan,
Emidio Capriotti,
Eleazar Eskin,
Fereydoun Hormozdiari,
Maricel G. Kann:
Session Introduction.
Pacific Symposium on Biocomputing 2011: 229-230 |
| 12 |  | Farhad Hormozdiari,
Faraz Hach,
Süleyman Cenk Sahinalp,
Evan E. Eichler,
Can Alkan:
Sensitive and fast mapping of di-base encoded reads.
Bioinformatics 27(14): 1915-1921 (2011) |
| 2010 |
| 11 |  | Can Alkan,
Michael Brudno,
Evan E. Eichler,
Maricel G. Kann,
Süleyman Cenk Sahinalp:
Session Introduction.
Pacific Symposium on Biocomputing 2010: 302-304 |
| 10 |  | Iman Hajirasouliha,
Fereydoun Hormozdiari,
Can Alkan,
Jeffrey M. Kidd,
Inanç Birol,
Evan E. Eichler,
Süleyman Cenk Sahinalp:
Detection and characterization of novel sequence insertions using paired-end next-generation sequencing.
Bioinformatics 26(10): 1277-1283 (2010) |
| 9 |  | Fereydoun Hormozdiari,
Iman Hajirasouliha,
Phuong Dao,
Faraz Hach,
Deniz Yörükoglu,
Can Alkan,
Evan E. Eichler,
Süleyman Cenk Sahinalp:
Next-generation VariationHunter: combinatorial algorithms for transposon insertion discovery.
Bioinformatics [ISMB] 26(12): 350-357 (2010) |
| 2009 |
| 8 |  | Fereydoun Hormozdiari,
Can Alkan,
Evan E. Eichler,
Süleyman Cenk Sahinalp:
Combinatorial Algorithms for Structural Variation Detection in High Throughput Sequenced Genomes.
RECOMB 2009: 218-219 |
| 2007 |
| 7 |  | Cagri Aksay,
Raheleh Salari,
Emre Karakoç,
Can Alkan,
Süleyman Cenk Sahinalp:
taveRNA: a web suite for RNA algorithms and applications.
Nucleic Acids Research 35(Web-Server-Issue): 325-329 (2007) |
| 6 |  | Can Alkan,
Mario Ventura,
Nicoletta Archidiacono,
Mariano Rocchi,
Süleyman Cenk Sahinalp,
Evan E. Eichler:
Organization and Evolution of Primate Centromeric DNA from Whole-Genome Shotgun Sequence Data.
PLoS Computational Biology 3(9): (2007) |
| 2006 |
| 5 |  | Can Alkan,
Emre Karakoç,
Süleyman Cenk Sahinalp,
Peter J. Unrau,
H. Alexander Ebhardt,
Kaizhong Zhang,
Jeremy Buhler:
RNA Secondary Structure Prediction Via Energy Density Minimization.
RECOMB 2006: 130-142 |
| 4 |  | Can Alkan,
Emre Karakoç,
Joseph H. Nadeau,
Süleyman Cenk Sahinalp,
Kaizhong Zhang:
RNA-RNA Interaction Prediction and Antisense RNA Target Search.
Journal of Computational Biology 13(2): 267-282 (2006) |
| 2005 |
| 3 |  | Can Alkan,
Emre Karakoç,
Joseph H. Nadeau,
Süleyman Cenk Sahinalp,
Kaizhong Zhang:
RNA-RNA Interaction Prediction and Antisense RNA Target Search.
RECOMB 2005: 152-171 |
| 2 |  | Can Alkan,
Eray Tüzün,
Jerome Buard,
Franck Lethiec,
Evan E. Eichler,
Jeffrey A. Bailey,
Süleyman Cenk Sahinalp:
Manipulating multiple sequence alignments via MaM and WebMaM.
Nucleic Acids Research 33(Web-Server-Issue): 295-298 (2005) |
| 2004 |
| 1 |  | Can Alkan,
Evan E. Eichler,
Jeffrey A. Bailey,
Süleyman Cenk Sahinalp,
Eray Tüzün:
The Role of Unequal Crossover in Alpha-Satellite DNA Evolution: A Computational Analysis.
Journal of Computational Biology 11(5): 933-944 (2004) |