Tatsuya Akutsu

	2012
142		Tatsuya Akutsu, Daiji Fukagawa, Jesper Jansson, Kunihiko Sadakane: Inferring a graph from path frequency. Discrete Applied Mathematics 160(10-11): 1416-1428 (2012)
141		Tatsuya Akutsu, Avraham A. Melkman, Takeyuki Tamura: Singleton and 2-periodic attractors of sign-definite Boolean networks. Inf. Process. Lett. 112(1-2): 35-38 (2012)
	2011
140		Tatsuya Akutsu, Tomoya Mori, Takeyuki Tamura, Daiji Fukagawa, Atsuhiro Takasu, Etsuji Tomita: An Improved Clique-Based Method for Computing Edit Distance between Unordered Trees and Its Application to Comparison of Glycan Structures. CISIS 2011: 536-540
139		Ozgur Demir-Kavuk, Mayumi Kamada, Tatsuya Akutsu, Ernst-Walter Knapp: Prediction using step-wise L1, L2 regularization and feature selection for small data sets with large number of features. BMC Bioinformatics 12: 412 (2011)
138		Kengo Sato, Yuki Kato, Michiaki Hamada, Tatsuya Akutsu, Kiyoshi Asai: IPknot: fast and accurate prediction of RNA secondary structures with pseudoknots using integer programming. Bioinformatics [ISMB/ECCB] 27(13): 85-93 (2011)
137		Tatsuya Akutsu, Hiroshi Nagamochi: Kernel Methods for Chemical Compounds: From Classification to Design. IEICE Transactions 94-D(10): 1846-1853 (2011)
136		Takeyuki Tamura, Yang Cong, Tatsuya Akutsu, Wai-Ki Ching: An Efficient Method of Computing Impact Degrees for Multiple Reactions in Metabolic Networks with Cycles. IEICE Transactions 94-D(12): 2393-2399 (2011)
135		Morihiro Hayashida, Tatsuya Akutsu: Measuring the Similarity of Protein Structures Using Image Compression Algorithms. IEICE Transactions 94-D(12): 2468-2478 (2011)
134		Jiangning Song, Hao Tan, Sarah E. Boyd, Hongbin Shen, Khalid Mahmood, Geoffrey I. Webb, Tatsuya Akutsu, James C. Whisstock, Robert N. Pike: Bioinformatic Approaches for Predicting substrates of Proteases. J. Bioinformatics and Computational Biology 9(1): 149-178 (2011)
133		Unyanee Poolsap, Yuki Kato, Kengo Sato, Tatsuya Akutsu: Using binding Profiles to Predict binding sites of Target RNAs. J. Bioinformatics and Computational Biology 9(6): 697-713 (2011)
132		Tatsuya Akutsu, Daiji Fukagawa, Atsuhiro Takasu, Takeyuki Tamura: Exact algorithms for computing the tree edit distance between unordered trees. Theor. Comput. Sci. 412(4-5): 352-364 (2011)
	2010
131		Xi Chen, Tatsuya Akutsu, Takeyuki Tamura, Wai-Ki Ching: Finding optimal control policy in Probabilistic Boolean Networks with hard constraints by using integer programming and dynamic programming. BIBM 2010: 240-246
130		Morihiro Hayashida, Peiying Ruan, Tatsuya Akutsu: A Quadsection Algorithm for Grammar-Based Image Compression. FGIT 2010: 234-248
129		Atsuhiro Takasu, Daiji Fukagawa, Tatsuya Akutsu: A Variational Bayesian EM Algorithm for Tree Similarity. ICPR 2010: 1056-1059
128		Unyanee Poolsap, Yuki Kato, Tatsuya Akutsu: Dynamic Programming Algorithms for RNA Structure Prediction with Binding Sites. Pacific Symposium on Biocomputing 2010: 98-107
127		Tatsuya Akutsu, Daiji Fukagawa, Atsuhiro Takasu: Approximating Tree Edit Distance through String Edit Distance. Algorithmica 57(2): 325-348 (2010)
126		Yuki Kato, Kengo Sato, Michiaki Hamada, Yoshihide Watanabe, Kiyoshi Asai, Tatsuya Akutsu: RactIP: fast and accurate prediction of RNA-RNA interaction using integer programming. Bioinformatics 26(18): (2010)
125		Jiangning Song, Hao Tan, Hongbin Shen, Khalid Mahmood, Sarah E. Boyd, Geoffrey I. Webb, Tatsuya Akutsu, James C. Whisstock: Cascleave: towards more accurate prediction of caspase substrate cleavage sites. Bioinformatics 26(6): 752-760 (2010)
124		Jose C. Nacher, Morihiro Hayashida, Tatsuya Akutsu: The role of internal duplication in the evolution of multi-domain proteins. Biosystems 101(2): 127-135 (2010)
123		Takeyuki Tamura, Tatsuya Akutsu: Exact Algorithms for Finding a Minimum Reaction Cut under a Boolean Model of Metabolic Networks. IEICE Transactions 93-A(8): 1497-1507 (2010)
122		Tatsuya Akutsu: Tree Edit Distance Problems: Algorithms and Applications to Bioinformatics. IEICE Transactions 93-D(2): 208-218 (2010)
121		Takeyuki Tamura, Kazuhiro Takemoto, Tatsuya Akutsu: Finding Minimum Reaction Cuts of Metabolic Networks Under a Boolean Model Using Integer Programming and Feedback Vertex Sets. IJKDB 1(1): 14-31 (2010)
120		Avraham A. Melkman, Takeyuki Tamura, Tatsuya Akutsu: Determining a singleton attractor of an AND/OR Boolean network in O(1.587n) time. Inf. Process. Lett. 110(14-15): 565-569 (2010)
119		Tatsuya Akutsu: A bisection algorithm for grammar-based compression of ordered trees. Inf. Process. Lett. 110(18-19): 815-820 (2010)
	2009
118		Tatsuya Akutsu, Takeyuki Tamura, Katsuhisa Horimoto: Completing Networks Using Observed Data. ALT 2009: 126-140
117		Tatsuya Akutsu, Morihiro Hayashida, Takeyuki Tamura: Integer programming-based methods for attractor detection and control of boolean networks. CDC 2009: 5610-5617
116		Takeyuki Tamura, Kazuhiro Takemoto, Tatsuya Akutsu: Measuring Structural Robustness of Metabolic Networks under a Boolean Model Using Integer Programming and Feedback Vertex Sets. CISIS 2009: 819-824
115		Jose C. Nacher, T. Ochiai, Morihiro Hayashida, Tatsuya Akutsu: A Bipartite Graph Based Model of Protein Domain Networks. Complex (1) 2009: 525-535
114		Yang Cong, Takeyuki Tamura, Tatsuya Akutsu, Wai-Ki Ching: Efficient computation of impact degrees for multiple reactions in metabolic networks with cycles. DTMBIO 2009: 67-70
113		Atsuhiro Takasu, Daiji Fukagawa, Tatsuya Akutsu: Latent Topic Extraction from Relational Table for Record Matching. Discovery Science 2009: 449-456
112		Tomoki Imada, Shunsuke Ota, Hiroshi Nagamochi, Tatsuya Akutsu: Enumerating Stereoisomers of Tree Structured Molecules Using Dynamic Programming. ISAAC 2009: 14-23
111		Daiji Fukagawa, Tatsuya Akutsu, Atsuhiro Takasu: Constant Factor Approximation of Edit Distance of Bounded Height Unordered Trees. SPIRE 2009: 7-17
110		J. B. Brown, Tatsuya Akutsu: Identification of novel DNA repair proteins via primary sequence, secondary structure, and homology. BMC Bioinformatics 10: (2009)
109		Unyanee Poolsap, Yuki Kato, Tatsuya Akutsu: Prediction of RNA secondary structure with pseudoknots using integer programming. BMC Bioinformatics 10(S-1): (2009)
108		Jose C. Nacher, Morihiro Hayashida, Tatsuya Akutsu: Emergence of scale-free distribution in protein-protein interaction networks based on random selection of interacting domain pairs. Biosystems 95(2): 155-159 (2009)
107		Takeyuki Tamura, Tatsuya Akutsu: Detecting a Singleton Attractor in a Boolean Network Utilizing SAT Algorithms. IEICE Transactions 92-A(2): 493-501 (2009)
106		Tatsuya Akutsu, Takeyuki Tamura: On Finding a Fixed Point in a Boolean Network with Maximum Indegree 2. IEICE Transactions 92-A(8): 1771-1778 (2009)
105		Takeyuki Tamura, Tatsuya Akutsu: Algorithms for Singleton Attractor Detection in Planar and Nonplanar AND/OR Boolean Networks. Mathematics in Computer Science 2(3): 401-420 (2009)
104		Yuki Kato, Tatsuya Akutsu, Hiroyuki Seki: A grammatical approach to RNA-RNA interaction prediction. Pattern Recognition 42(4): 531-538 (2009)
	2008
103		Alvis Brazma, Satoru Miyano, Tatsuya Akutsu: Proceedings of the 6th Asia-Pacific Bioinformatics Conference, APBC 2008, 14-17 January 2008, Kyoto, Japan Imperial College Press 2008
102		Tatsuya Akutsu, Morihiro Hayashida, Takeyuki Tamura: Algorithms for Inference, Analysis and Control of Boolean Networks. AB 2008: 1-15
101		Takeyuki Tamura, Tatsuya Akutsu: An Improved Algorithm for Detecting a Singleton Attractor in a Boolean Network Consisting of AND/OR Nodes. AB 2008: 216-229
100		Morihiro Hayashida, Tatsuya Akutsu: Image Compression-based Approach to Measuring the Similarity of Protein Structures. APBC 2008: 221-230
99		Alvis Brazma, Satoru Miyano, Tatsuya Akutsu: Preface. APBC 2008
98		Yuki Kato, Tatsuya Akutsu, Hiroyuki Seki: Prediction of Protein Beta-Sheets: Dynamic Programming versus Grammatical Approach. PRIB 2008: 66-77
97		Tatsuya Akutsu: Bioinformatics. Wiley Encyclopedia of Computer Science and Engineering 2008
96		Jiangning Song, Hao Tan, Kazuhiro Takemoto, Tatsuya Akutsu: HSEpred: predict half-sphere exposure from protein sequences. Bioinformatics 24(13): 1489-1497 (2008)
95		Morihiro Hayashida, Takeyuki Tamura, Tatsuya Akutsu, Shuqin Zhang, Wai-Ki Ching: Algorithms and Complexity Analyses for Control of Singleton Attractors in Boolean Networks. EURASIP J. Bioinformatics and Systems Biology 2008: (2008)
94		Morihiro Hayashida, Fuyan Sun, Sachiyo Aburatani, Katsuhisa Horimoto, Tatsuya Akutsu: Integer programming-based approach to allocation of reporter genes for cell array analysis. IJBRA 4(4): 385-399 (2008)
93		Tatsuya Akutsu, Daiji Fukagawa, Atsuhiro Takasu: Improved approximation of the largest common subtree of two unordered trees of bounded height. Inf. Process. Lett. 109(2): 165-170 (2008)
	2007
92		Tatsuya Akutsu, Daiji Fukagawa: Inferring a Chemical Structure from a Feature Vector Based on Frequency of Labeled Paths and Small Fragments. APBC 2007: 165-174
91		Morihiro Hayashida, Tatsuya Akutsu, Hiroshi Nagamochi: A Novel Clustering Method for Analysis of Biological Networks using Maximal Components of Graphs. APBC 2007: 257-266
90		Takeyuki Tamura, Tatsuya Akutsu: An O(1.787n)-Time Algorithm for Detecting a Singleton Attractor in a Boolean Network Consisting of AND/OR Nodes. FCT 2007: 494-505
89		Atsuhiro Takasu, Daiji Fukagawa, Tatsuya Akutsu: Statistical Learning Algorithm for Tree Similarity. ICDM 2007: 667-672
88		Jiexun Wang, Liang Zhao, Hiroshi Nagamochi, Tatsuya Akutsu: An Efficient Algorithm for Generating Colored Outerplanar Graphs. TAMC 2007: 573-583
87		Jose C. Nacher, Morihiro Hayashida, Tatsuya Akutsu: Topological aspects of protein networks. Emergent Intelligence of Networked Agents 2007: 147-158
86		Kazuhiro Takemoto, Jose C. Nacher, Tatsuya Akutsu: Correlation between structure and temperature in prokaryotic metabolic networks. BMC Bioinformatics 8: (2007)
85		Takeyuki Tamura, Tatsuya Akutsu: Subcellular location prediction of proteins using support vector machines with alignment of block sequences utilizing amino acid composition. BMC Bioinformatics 8: (2007)
84		Wai-Ki Ching, Shuqin Zhang, Michael K. Ng, Tatsuya Akutsu: An approximation method for solving the steady-state probability distribution of probabilistic Boolean networks. Bioinformatics 23(12): 1511-1518 (2007)
83		Tatsuya Akutsu, Hideo Bannai, Satoru Miyano, Sascha Ott: On the complexity of deriving position specific score matrices from positive and negative sequences. Discrete Applied Mathematics 155(6-7): 676-685 (2007)
82		Shuqin Zhang, Morihiro Hayashida, Tatsuya Akutsu, Wai-Ki Ching, Michael Kwok-Po Ng: Algorithms for Finding Small Attractors in Boolean Networks. EURASIP J. Bioinformatics and Systems Biology 2007: (2007)
81		Edward R. Dougherty, Tatsuya Akutsu, Paul Dan Cristea, Ahmed H. Tewfik: Genetic Regulatory Networks. EURASIP J. Bioinformatics and Systems Biology 2007: (2007)
80		Takeyuki Tamura, Tatsuya Akutsu: Approximation Algorithms for Optimal RNA Secondary Structures Common to Multiple Sequences. IEICE Transactions 90-A(5): 917-923 (2007)
79		Shuqin Zhang, Wai-Ki Ching, Michael K. Ng, Tatsuya Akutsu: Simulation study in Probabilistic Boolean Network models for genetic regulatory networks. IJDMB 1(3): 217-240 (2007)
	2006
78		Tatsuya Akutsu, Morihiro Hayashida, Wai-Ki Ching, Michael K. Ng: On the Complexity of Finding Control Strategies for Boolean Networks. APBC 2006: 99-108
77		Tatsuya Akutsu, Daiji Fukagawa, Atsuhiro Takasu: Approximating Tree Edit Distance Through String Edit Distance. ISAAC 2006: 90-99
76		Jose C. Nacher, Jean-Marc Schwartz, Minoru Kanehisa, Tatsuya Akutsu: Identification of metabolic units induced by environmental signals. ISMB (Supplement of Bioinformatics) 2006: 375-383
75		Hiroto Saigo, Jean-Philippe Vert, Tatsuya Akutsu: Optimizing amino acid substitution matrices with a local alignment kernel. BMC Bioinformatics 7: 246 (2006)
74		Tatsuya Akutsu, Morihiro Hayashida, Dukka Bahadur, Etsuji Tomita, Jun'ichi Suzuki, Katsuhisa Horimoto: Dynamic Programming and Clique Based Approaches for Protein Threading with Profiles and Constraints. IEICE Transactions 89-A(5): 1215-1222 (2006)
73		Tatsuya Akutsu: A relation between edit distance for ordered trees and edit distance for Euler strings. Inf. Process. Lett. 100(3): 105-109 (2006)
72		Daiji Fukagawa, Tatsuya Akutsu: Fast Algorithms for Comparison of Similar Unordered Trees. Int. J. Found. Comput. Sci. 17(3): 703-729 (2006)
71		Tatsuya Akutsu: Algorithms for Point Set Matching with K-differences. Int. J. Found. Comput. Sci. 17(4): 903-918 (2006)
70		K. C. Dukka Bahadur, Etsuji Tomita, Jun'ichi Suzuki, Katsuhisa Horimoto, Tatsuya Akutsu: Protein Threading with Profiles and Distance Constraints Using Clique Based Algorithms. J. Bioinformatics and Computational Biology 4(1): 19-42 (2006)
69		Michael K. Ng, Shuqin Zhang, Wai-Ki Ching, Tatsuya Akutsu: A Control Model for Markovian Genetic Regulatory Networks. T. Comp. Sys. Biology: 36-48 (2006)
	2005
68		Dukka Bahadur, Etsuji Tomita, Jun'ichi Suzuki, Katsuhisa Horimoto, Tatsuya Akutsu: Clique-based algorithms for protein threading with profiles and constraints. APBC 2005: 51-64
67		Tatsuya Akutsu, Daiji Fukagawa: Inferring a Graph from Path Frequency. CPM 2005: 371-382
66		Shuqin Zhang, Michael K. Ng, Wai-Ki Ching, Tatsuya Akutsu: A linear control model for gene intervention in a genetic regulatory network. GrC 2005: 354-358
65		Masumi Itoh, Susumu Goto, Tatsuya Akutsu, Minoru Kanehisa: Fast and accurate database homology search using upper bounds of local alignment scores. Bioinformatics 21(7): 912-921 (2005)
64		Kiyoko F. Aoki, Hiroshi Mamitsuka, Tatsuya Akutsu, Minoru Kanehisa: A score matrix to reveal the hidden links in glycans. Bioinformatics 21(8): 1457-1463 (2005)
63		Nobuhisa Ueda, Kiyoko F. Aoki-Kinoshita, Atsuko Yamaguchi, Tatsuya Akutsu, Hiroshi Mamitsuka: A Probabilistic Model for Mining Labeled Ordered Trees: Capturing Patterns in Carbohydrate Sugar Chains. IEEE Trans. Knowl. Data Eng. 17(8): 1051-1064 (2005)
62		Daiji Fukagawa, Tatsuya Akutsu: Performance analysis of a greedy algorithm for inferring Boolean functions. Inf. Process. Lett. 93(1): 7-12 (2005)
61		Wai-Ki Ching, Michael K. Ng, Eric S. Fung, Tatsuya Akutsu: On construction of stochastic genetic networks based on gene expression sequences. Int. J. Neural Syst. 15(4): 297-310 (2005)
60		K. C. Dukka Bahadur, Etsuji Tomita, Jun'ichi Suzuki, Tatsuya Akutsu: Protein Side-chain Packing Problem: a Maximum Edge-weight Clique Algorithmic Approach. J. Bioinformatics and Computational Biology 3(1): 103-126 (2005)
59		Pierre Mahé, Nobuhisa Ueda, Tatsuya Akutsu, Jean-Luc Perret, Jean-Philippe Vert: Graph Kernels for Molecular Structure-Activity Relationship Analysis with Support Vector Machines. Journal of Chemical Information and Modeling 45(4): 939-951 (2005)
	2004
58		Dukka Bahadur, Tatsuya Akutsu, Etsuji Tomita, Tomokazu Seki: Protein Side-chain Packing Problem: A Maximum Edge-weight Clique Algorithmic Approach. APBC 2004: 191-200
57		Tatsuya Akutsu, Morihiro Hayashida, Etsuji Tomita, Jun'ichi Suzuki, Katsuhisa Horimoto: Protein Threading with Profiles and Constraints. BIBE 2004: 537-544
56		Tatsuya Akutsu: Algorithms for Point Set Matching with k-Differences. COCOON 2004: 249-258
55		Pierre Mahé, Nobuhisa Ueda, Tatsuya Akutsu, Jean-Luc Perret, Jean-Philippe Vert: Extensions of marginalized graph kernels. ICML 2004
54		Daiji Fukagawa, Tatsuya Akutsu: Fast Algorithms for Comparison of Similar Unordered Trees. ISAAC 2004: 452-463
53		Kiyoko F. Aoki, Nobuhisa Ueda, Atsuko Yamaguchi, Minoru Kanehisa, Tatsuya Akutsu, Hiroshi Mamitsuka: Application of a new probabilistic model for recognizing complex patterns in glycans. ISMB/ECCB (Supplement of Bioinformatics) 2004: 6-14
52		Jose C. Nacher, Nobuhisa Ueda, Takuji Yamada, Minoru Kanehisa, Tatsuya Akutsu: Clustering under the line graph transformation: application to reaction network. BMC Bioinformatics 5: 207 (2004)
51		Hiroto Saigo, Jean-Philippe Vert, Nobuhisa Ueda, Tatsuya Akutsu: Protein homology detection using string alignment kernels. Bioinformatics 20(11): 1682-1689 (2004)
50		Yuichiro Hourai, Tatsuya Akutsu, Yutaka Akiyama: Optimizing substitution matrices by separating score distributions. Bioinformatics 20(6): 863-873 (2004)
49		Tatsuya Akutsu: Efficient Extraction of Mapping Rules of Atoms from Enzymatic Reaction Data. Journal of Computational Biology 11(2/3): 449-462 (2004)
48		Kiyoko F. Aoki, Atsuko Yamaguchi, Nobuhisa Ueda, Tatsuya Akutsu, Hiroshi Mamitsuka, Susumu Goto, Minoru Kanehisa: KCaM (KEGG Carbohydrate Matcher): a software tool for analyzing the structures of carbohydrate sugar chains. Nucleic Acids Research 32(Web-Server-Issue): 267-272 (2004)
47		Kiyoko F. Aoki, Nobuhisa Ueda, Atsuko Yamaguchi, Tatsuya Akutsu, Minoru Kanehisa, Hiroshi Mamitsuka: Managing and Analyzing Carbohydrate Data. SIGMOD Record 33(2): 33-38 (2004)
	2003
46		Tatsuya Akutsu: Computational and Statistical Methods in Bioinformatics. Active Mining 2003: 11-33
45		Daiji Fukagawa, Tatsuya Akutsu: Performance Analysis of a Greedy Algorithm for Inferring Boolean Functions. Discovery Science 2003: 114-127
44		Daisuke Shinozaki, Tatsuya Akutsu, Osamu Maruyama: Finding optimal degenerate patterns in DNA sequences. ECCB 2003: 206-214
43		Morihiro Hayashida, Nobuhisa Ueda, Tatsuya Akutsu: Inferring strengths of protein-protein interactions from experimental data using linear programming. ECCB 2003: 58-65
42		Tatsuya Akutsu: Efficient extraction of mapping rules of atoms from enzymatic reaction data. RECOMB 2003: 1-8
41		Tatsuya Akutsu, Kyotetsu Kanaya, Akira Ohyama, Asao Fujiyama: Point matching under non-uniform distortions. Discrete Applied Mathematics 127(1): 5-21 (2003)
40		Tatsuya Akutsu, Satoru Kuhara, Osamu Maruyama, Satoru Miyano: Identification of genetic networks by strategic gene disruptions and gene overexpressions under a boolean model. Theor. Comput. Sci. 1(298): 235-251 (2003)
39		Tatsuya Akutsu, Satoru Miyano, Satoru Kuhara: A simple greedy algorithm for finding functional relations: efficient implementation and average case analysis. Theor. Comput. Sci. 292(2): 481-495 (2003)
	2002
38		Tatsuya Akutsu, Sascha Ott: Inferring a Union of Halfspaces from Examples. COCOON 2002: 117-126
37		Tatsuya Akutsu, Hideo Bannai, Satoru Miyano, Sascha Ott: On the Complexity of Deriving Position Specific Score Matrices from Examples. CPM 2002: 168-177
	2000
36		Tatsuya Akutsu, Satoru Miyano, Satoru Kuhara: A Simple Greedy Algorithm for Finding Functional Relations: Efficient Implementation and Average Case Anaylsis. Discovery Science 2000: 86-98
35		Tatsuya Akutsu, Hiroki Arimura, Shinichi Shimozono: On approximation algorithms for local multiple alignment. RECOMB 2000: 1-7
34		Tatsuya Akutsu, Satoru Miyano, Satoru Kuhara: Algorithms for identifying Boolean networks and related biological networks based on matrix multiplication and fingerprint function. RECOMB 2000: 8-14
33		Tatsuya Akutsu, Satoru Miyano, Satoru Kuhara: Inferring qualitative relations in genetic networks and metabolic pathways. Bioinformatics 16(8): 727-734 (2000)
32		Tatsuya Akutsu: Dynamic programming algorithms for RNA secondary structure prediction with pseudoknots. Discrete Applied Mathematics 104(1-3): 45-62 (2000)
31		Tatsuya Akutsu, Satoru Miyano, Satoru Kuhara: Algorithms for Identifying Boolean Networks and Related Biological Networks Based on Matrix Multiplication and Fingerprint Function. Journal of Computational Biology 7(3-4): 331-343 (2000)
30		Tatsuya Akutsu, Magnús M. Halldórsson: On the approximation of largest common subtrees and largest common point sets. Theor. Comput. Sci. 233(1-2): 33-50 (2000)
	1999
29		Tatsuya Akutsu, Kyotetsu Kanaya, Akira Ohyama, Asao Fujiyama: Matching of Spots in 2D Electrophoresis Images. Point Matching Under Non-uniform Distortions. CPM 1999: 212-222
28		Tatsuya Akutsu, Satoru Miyano, Satoru Kuhara: Identification of Genetic Networks from a Small Number of Gene Expression Patterns Under the Boolean Network Model. Pacific Symposium on Biocomputing 1999: 17-28
27		Tatsuya Akutsu: Approximation and Exact Algorithms for RNA Secondary Structure Prediction and Recognition of Stochastic Context-free Languages. J. Comb. Optim. 3(2-3): 321-336 (1999)
26		Tatsuya Akutsu, Satoru Miyano: On the Approximation of Protein Threading. Theor. Comput. Sci. 210(2): 261-275 (1999)
	1998
25		Tatsuya Akutsu, Mutsunori Yagiura: On the Complexity of Deriving Score Functions from Examples for Problems in Molecular Biology. ICALP 1998: 832-843
24		Tatsuya Akutsu: Approximation and Exact Algorithms for RNA Secondary Structure Prediction and Recognition of Stochastic Context-Free Languages. ISAAC 1998: 337-346
23		Tatsuya Akutsu, Satoru Kuhara, Osamu Maruyama, Satoru Miyano: Identification of Gene Regulatory Networks by Strategic Gene Disruptions and Gene Overexpressions. SODA 1998: 695-702
22		Tatsuya Akutsu: On determining the congruence of point sets in d dimensions. Comput. Geom. 9(4): 247-256 (1998)
21		Tatsuya Akutsu, Hisao Tamaki, Takeshi Tokuyama: Distribution of Distances and Triangles in a Point Set and Algorithms for Computing the Largest Common Point Sets. Discrete & Computational Geometry 20(3): 307-331 (1998)
	1997
20		Tatsuya Akutsu, Satoru Miyano: On the approximation of protein threading. RECOMB 1997: 3-8
19		Tatsuya Akutsu, Hisao Tamaki, Takeshi Tokuyama: Distribution of Distances and Triangles in a Point Set and Algorithms for Computing the Largest Common Point Sets. Symposium on Computational Geometry 1997: 314-323
18		Tatsuya Akutsu, Kentaro Onizuka, Masato Ishikawa: Rapid protein fragment search using hash functions based on the Fourier transform. Computer Applications in the Biosciences 13(4): 357-364 (1997)
	1996
17		Tatsuya Akutsu, Feng Bao: Approximating Minimum Keys and Optimal Substructure Screens. COCOON 1996: 290-299
16		Atsuhiro Takasu, Tatsuya Akutsu, Moonis Ali: Sampling Effectiveness in Discovering Functional Relationships in Databases. IEA/AIE 1996: 455-460
	1995
15		Tatsuya Akutsu, Kentaro Onizuka, Masato Ishikawa: New hashing techniques and their application to a protein structure database system. HICSS (5) 1995: 197-206
14		Tatsuya Akutsu: A Parallel Algorithm for Determining the Congruence of Point Sets in Three-Dimensions. IEICE Transactions 78-D(4): 321-325 (1995)
13		Tatsuya Akutsu: Approximate String Matching with don't Care Characters. Inf. Process. Lett. 55(5): 235-239 (1995)
	1994
12		Tatsuya Akutsu: Approximate String Matching with Don't Care Characters. CPM 1994: 240-249
11		Tatsuya Akutsu: Efficient and Robust Three-Dimensional Pattern Matching Algorithms Using Hashing and Dynamic Programming Techniques. HICSS (5) 1994: 225-234
10		Tatsuya Akutsu: On Determining the Congruity of Point Sets in Higher Dimensions. ISAAC 1994: 38-46
9		Tatsuya Akutsu, Magnús M. Halldórsson: On the Approximation of Largest Common Subtrees and Largest Common Point Sets. ISAAC 1994: 405-413
8		Tatsuya Akutsu, Atsuhiro Takasu: On PAC Learnability of Functional Depencies. New Generation Comput. 12(4): 359-374 (1994)
	1993
7		Tatsuya Akutsu: A Linear Time Pattern Matching Algorithm Between a String and a Tree. CPM 1993: 1-10
6		Einoshin Suzuki, Tatsuya Akutsu, Setsuo Ohsuga: Knowledge-based system for computer-aided drug design. Knowl.-Based Syst. 6(2): 114-126 (1993)
	1992
5		Tatsuya Akutsu, Atsuhiro Takasu: On PAC Learnability of Functional Dependencies. ALT 1992: 229-239
4		Tatsuya Akutsu: Algorithms for Determining the Geometrical Congruity in Two and Three Dimensions. ISAAC 1992: 279-288
	1991
3		Tatsuya Akutsu: A new method of computer representation of stereochemistry. Transforming a stereochemical structure into a graph. Journal of Chemical Information and Computer Sciences 31(3): 414-417 (1991)
2		Tatsuya Akutsu, Einoshin Suzuki, Setsuo Ohsuga: Logic-based approach to expert systems in chemistry. Knowl.-Based Syst. 4(2): 103-116 (1991)
	1988
1		Tatsuya Akutsu, Setsuo Ohsuga: CHEMILOG - A Logic Programming Language/System for Chemical Information Processing. FGCS 1988: 1176-1183

Coauthor Index

1	Sachiyo Aburatani	[94]
2	Yutaka Akiyama	[50]
3	Moonis Ali	[16]
4	Kiyoko F. Aoki-Kinoshita (Kiyoko F. Aoki)	[47] [48] [53] [63] [64]
5	Hiroki Arimura	[35]
6	Kiyoshi Asai	[126] [138]
7	Dukka Bahadur (K. C. Dukka Bahadur)	[58] [60] [68] [70] [74]
8	Hideo Bannai	[37] [83]
9	Feng Bao	[17]
10	Sarah E. Boyd	[125] [134]
11	Alvis Brazma	[99] [103]
12	J. B. Brown	[110]
13	Xi Chen	[131]
14	Wai-Ki Ching	[61] [66] [69] [78] [79] [82] [84] [95] [114] [131] [136]
15	Yang Cong	[114] [136]
16	Paul Dan Cristea (Paul Cristea)	[81]
17	Ozgur Demir-Kavuk	[139]
18	Edward R. Dougherty	[81]
19	Asao Fujiyama	[29] [41]
20	Daiji Fukagawa	[45] [54] [62] [67] [72] [77] [89] [92] [93] [111] [113] [127] [129] [132] [140] [142]
21	Eric S. Fung	[61]
22	Susumu Goto	[48] [65]
23	Magnús M. Halldórsson	[9] [30]
24	Michiaki Hamada	[126] [138]
25	Morihiro Hayashida	[43] [57] [74] [78] [82] [87] [91] [94] [95] [100] [102] [108] [115] [117] [124] [130] [135]
26	Katsuhisa Horimoto	[57] [68] [70] [74] [94] [118]
27	Yuichiro Hourai	[50]
28	Tomoki Imada	[112]
29	Masato Ishikawa	[15] [18]
30	Masumi Itoh	[65]
31	Jesper Jansson	[142]
32	Mayumi Kamada	[139]
33	Kyotetsu Kanaya	[29] [41]
34	Minoru Kanehisa	[47] [48] [52] [53] [64] [65] [76]
35	Yuki Kato	[98] [104] [109] [126] [128] [133] [138]
36	Ernst-Walter Knapp	[139]
37	Satoru Kuhara	[23] [28] [31] [33] [34] [36] [39] [40]
38	Pierre Mahé	[55] [59]
39	Khalid Mahmood	[125] [134]
40	Hiroshi Mamitsuka	[47] [48] [53] [63] [64]
41	Osamu Maruyama	[23] [40] [44]
42	Avraham A. Melkman	[120] [141]
43	Satoru Miyano	[20] [23] [26] [28] [31] [33] [34] [36] [37] [39] [40] [83] [99] [103]
44	Tomoya Mori	[140]
45	Jose C. Nacher	[52] [76] [86] [87] [108] [115] [124]
46	Hiroshi Nagamochi	[88] [91] [112] [137]
47	Michael K. Ng (Michael Kwok-Po Ng)	[61] [66] [69] [78] [79] [82] [84]
48	T. Ochiai	[115]
49	Setsuo Ohsuga	[1] [2] [6]
50	Akira Ohyama	[29] [41]
51	Kentaro Onizuka	[15] [18]
52	Shunsuke Ota	[112]
53	Sascha Ott	[37] [38] [83]
54	Jean-Luc Perret	[55] [59]
55	Robert N. Pike	[134]
56	Unyanee Poolsap	[109] [128] [133]
57	Peiying Ruan	[130]
58	Kunihiko Sadakane	[142]
59	Hiroto Saigo	[51] [75]
60	Kengo Sato	[126] [133] [138]
61	Jean-Marc Schwartz	[76]
62	Hiroyuki Seki	[98] [104]
63	Tomokazu Seki	[58]
64	Hongbin Shen	[125] [134]
65	Shinichi Shimozono	[35]
66	Daisuke Shinozaki	[44]
67	Jiangning Song	[96] [125] [134]
68	Fuyan Sun	[94]
69	Einoshin Suzuki	[2] [6]
70	Jun'ichi Suzuki	[57] [60] [68] [70] [74]
71	Atsuhiro Takasu	[5] [8] [16] [77] [89] [93] [111] [113] [127] [129] [132] [140]
72	Kazuhiro Takemoto	[86] [96] [116] [121]
73	Hisao Tamaki	[19] [21]
74	Takeyuki Tamura	[80] [85] [90] [95] [101] [102] [105] [106] [107] [114] [116] [117] [118] [120] [121] [123] [131] [132] [136] [140] [141]
75	Hao Tan	[96] [125] [134]
76	Ahmed H. Tewfik	[81]
77	Takeshi Tokuyama	[19] [21]
78	Etsuji Tomita	[57] [58] [60] [68] [70] [74] [140]
79	Nobuhisa Ueda	[43] [47] [48] [51] [52] [53] [55] [59] [63]
80	Jean-Philippe Vert	[51] [55] [59] [75]
81	Jiexun Wang	[88]
82	Yoshihide Watanabe	[126]
83	Geoffrey I. Webb	[125] [134]
84	James C. Whisstock	[125] [134]
85	Mutsunori Yagiura	[25]
86	Takuji Yamada	[52]
87	Atsuko Yamaguchi	[47] [48] [53] [63]
88	Shuqin Zhang	[66] [69] [79] [82] [84] [95]
89	Liang Zhao	[88]

Colors in the list of coauthors

Last update Sat May 26 04:23:17 2012 CET by the DBLP Team — Data released under the ODC-BY 1.0 license — See also our legal information page