 | 2010 |
| 14 |  | Mudita Singhal,
Anuj R. Shah,
Joshua N. Adkins,
Roslyn Brown:
Using support vector machine for improving protein-protein interaction prediction utilizing domain interactions.
BCB 2010: 537-545 |
| 13 |  | Anuj R. Shah,
Joshua N. Adkins,
Douglas J. Baxter,
William R. Cannon,
Daniel G. Chavarría-Miranda,
Sutanay Choudhury,
Ian Gorton,
Deborah K. Gracio,
Todd D. Halter,
Navdeep Jaitly,
John R. Johnson,
Richard T. Kouzes,
Matthew C. Macduff,
Andrès Márquez,
Matthew E. Monroe,
Christopher S. Oehmen,
William A. Pike,
Chad Scherrer,
Oreste Villa,
Bobbie-Jo M. Webb-Robertson,
Paul D. Whitney,
Nino Zuljevic:
Applications in Data-Intensive Computing.
Advances in Computers 79: 1-70 (2010) |
| 2009 |
| 12 |  | Anuj R. Shah,
Navdeep Jaitly,
Nino Zuljevic,
Matthew E. Monroe,
Andrei Liyu,
Ashoka D. Polpitiya,
Joshua N. Adkins,
Mikhail E. Belov,
Gordon A. Anderson,
Richard D. Smith,
Ian Gorton:
An Architecture for Real Time Data Acquisition and Online Signal Processing for High Throughput Tandem Mass Spectrometry.
eScience 2009: 88-93 |
| 11 |  | Navdeep Jaitly,
Anoop M. Mayampurath,
Kyle Littlefield,
Joshua N. Adkins,
Gordon A. Anderson,
Richard D. Smith:
Decon2LS: An open-source software package for automated processing and visualization of high resolution mass spectrometry data.
BMC Bioinformatics 10: (2009) |
| 10 |  | Yuliya V. Karpievitch,
Jeff Stanley,
Thomas Taverner,
Jianhua Huang,
Joshua N. Adkins,
Charles Ansong,
Fred Heffron,
Thomas O. Metz,
Wei-Jun Qian,
Hyunjin Yoon,
Richard D. Smith,
Alan R. Dabney:
A statistical framework for protein quantitation in bottom-up MS-based proteomics.
Bioinformatics 25(16): 2028-2034 (2009) |
| 9 |  | Yuliya V. Karpievitch,
Thomas Taverner,
Joshua N. Adkins,
Stephen J. Callister,
Gordon A. Anderson,
Richard D. Smith,
Alan R. Dabney:
Normalization of peak intensities in bottom-up MS-based proteomics using singular value decomposition.
Bioinformatics 25(19): 2573-2580 (2009) |
| 2008 |
| 8 |  | Ashoka D. Polpitiya,
Wei-Jun Qian,
Navdeep Jaitly,
Vladislav A. Petyuk,
Joshua N. Adkins,
David G. Camp II,
Gordon A. Anderson,
Richard D. Smith:
DAnTE: a statistical tool for quantitative analysis of -omics data.
Bioinformatics 24(13): 1556-1558 (2008) |
| 7 |  | Anoop M. Mayampurath,
Navdeep Jaitly,
Samuel O. Purvine,
Matthew E. Monroe,
Kenneth J. Auberry,
Joshua N. Adkins,
Richard D. Smith:
DeconMSn: a software tool for accurate parent ion monoisotopic mass determination for tandem mass spectra.
Bioinformatics 24(7): 1021-1023 (2008) |
| 6 |  | Matthew E. Monroe,
Jason L. Shaw,
Don Simone Daly,
Joshua N. Adkins,
Richard D. Smith:
MASIC: A software program for fast quantitation and flexible visualization of chromatographic profiles from detected LC-MS(/MS) features.
Computational Biology and Chemistry 32(3): 215-217 (2008) |
| 2007 |
| 5 |  | Bobbie-Jo M. Webb-Robertson,
Elena S. Peterson,
Mudita Singhal,
Kyle R. Klicker,
Christopher S. Oehmen,
Joshua N. Adkins,
Susan L. Havre:
PQuad - a visual analysis platform for proteomic data exploration of microbial organisms.
Bioinformatics 23(13): 1705-1707 (2007) |
| 4 |  | Matthew E. Monroe,
Nikola Tolic,
Navdeep Jaitly,
Jason L. Shaw,
Joshua N. Adkins,
Richard D. Smith:
VIPER: an advanced software package to support high-throughput LC-MS peptide identification.
Bioinformatics 23(15): 2021-2023 (2007) |
| 2006 |
| 3 |  | Bobbie-Jo M. Webb-Robertson,
William R. Cannon,
Joshua N. Adkins,
Deborah K. Gracio:
Session Introduction.
Pacific Symposium on Biocomputing 2006: 212-218 |
| 2 |  | Christopher S. Oehmen,
Lee Ann McCue,
Joshua N. Adkins,
Katrina M. Waters,
Tim Carlson,
William R. Cannon,
Bobbie-Jo M. Webb-Robertson,
Douglas J. Baxter,
Elena S. Peterson,
Mudita Singhal,
Anuj R. Shah,
Kyle R. Klicker:
Analytics challenge - High-throughput visual analytics biological sciences: turning data into knowledge.
SC 2006: 299 |
| 2004 |
| 1 |  | Joel C. Hunter,
Joshua N. Adkins,
Joel G. Pounds,
John H. Miller:
Facilitating interpretation of mass spectrometry based proteomics data.
METMBS 2004: 471-477 |