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ORCIDXSEDE 2012: Chicago, IL, USA
- Craig Stewart:
Proceedings of the 1st Conference of the Extreme Science and Engineering Discovery Environment - Bridging from the eXtreme to the campus and beyond, XSEDE '12, Chicago, Illinois, USA, July 16-20, 2012. ACM 2012, ISBN 978-1-4503-1602-6
Technology track
- Christopher S. Simmons, Karl W. Schulz:
A distributed memory out-of-core method on HPC clusters and its application to quantum chemistry applications. 1:1-1:7 - Rajib Mukherjee
, Abhinav Thota, Hideki Fujioka, Thomas C. Bishop, Shantenu Jha:
Running many molecular dynamics simulations on many supercomputers. 2:1-2:9 - Shawn M. Strande, Pietro Cicotti, Robert S. Sinkovits, William S. Young, Rick Wagner, Mahidhar Tatineni, Eva Hocks, Allan Snavely, Mike Norman:
Gordon: design, performance, and experiences deploying and supporting a data intensive supercomputer. 3:1-3:8 - Alan Humphrey, Qingyu Meng, Martin Berzins, Todd Harman:
Radiation modeling using the Uintah heterogeneous CPU/GPU runtime system. 4:1-4:8 - Tabitha K. Samuel, Stephen Taylor McNally, John Wynkoop:
An analysis of GPU utilization trends on the Keeneland initial delivery system. 5:1-5:6 - Amy F. Szczepanski, Jian Huang, Sean Ahern, Mark R. Fahey:
A tale of two systems: flexibility of usage of Kraken and Nautilus at the National Institute for Computational Sciences. 6:1-6:8 - Matthew A. Ezell, Gary L. Rogers, Gregory D. Peterson:
A framework for federated two-factor authentication enabling cost-effective secure access to distributed cyberinfrastructure. 7:1-7:8 - Ashay Rane, James C. Browne, Lars Koesterke:
A systematic process for efficient execution on Intel's heterogeneous computation nodes. 8:1-8:8 - Chris Jordan:
Evaluation of parallel and distributed file system technologies for XSEDE. 9:1 - Bilel Hadri, Haihang You, Shirley Moore:
Achieve better performance with PEAK on XSEDE resources. 10:1-10:8 - Richard Lee Moore, Adam Jundt, Leonard K. Carson, Kenneth Yoshimoto, Amin Ghadersohi, William S. Young:
Analyzing throughput and utilization on trestles. 11:1-11:7 - Josephine Palencia, Robert Budden, Kathy Benninger, Jorge Rodríguez, John Dilascio, Dimitri Bourilkov, Paul Avery, Mengxing Cheng, Yu Fu, Bockjoo Kim, Drew Oliver, Daniel Majchrzak, Dave Dykstra, Nirmal Seenu, Donald Shrum, Jim Wilgenbusch:
Using kerberized lustre over the WAN for high energy physics data. 12:1-12:7 - Paul Nowoczynski, Jason Sommerfield, Jared Yanovich, J. Ray Scott, Zhihui Zhang, Michael Levine:
The data supercell. 13:1-13:11
Science track
- Justin McKennon, Gary Forrester, Gaurav Khanna:
High accuracy gravitational waveforms from black hole binary inspirals using OpenCL. 14:1-14:8 - Ross C. Walker, Levi C. T. Pierce, Romelia Salomón-Ferrer:
Transforming molecular biology research through extreme acceleration of AMBER molecular dynamics simulations: sampling for the 99%. 15:1 - Fatemeh Khalili-Araghi, Brigitte Ziervogel, Benoît Roux, James C. Gumbart:
Membrane protein simulations under asymmetric ionic concentrations. 16:1 - Xiaoxu Guan, Klaus Bartschat, Barry I. Schneider:
Benchmark calculations for multi-photon ionization of the hydrogen molecule and the hydrogen molecular ion by short-pulse intense laser radiation. 17:1-17:6 - Hanning Chen, Xiao Zhu:
Electrostatic screening effects on a model system for molecular electronics. 18:1-18:2 - Hui Zhang, Huian Li, Michael J. Boyles, Robert Henschel, Eduardo Kazuo Kohara, Masatoshi Ando:
Exploiting HPC resources for the 3D-time series analysis of caries lesion activity. 19:1-19:8 - Luke P. Van Roekel, Peter E. Hamlington, Baylor Fox-Kemper:
Multiscale simulations of Langmuir cells and submesoscale eddies using XSEDE resources. 20:1-20:8 - Channing Brown, Iftekhar Ahmed, Y. Dora Cai, Marshall Scott Poole, Andrew Pilny, Yannick Atouba Ada:
Comparing the performance of group detection algorithm in serial and parallel processing environments. 21:1-21:4 - Judith Gelernter, Gang Wu:
High performance mining of social media data. 22:1-22:3 - Shriram Jagannathan, Diego A. Donzis:
Massively parallel direct numerical simulations of forced compressible turbulence: a hybrid MPI/OpenMP approach. 23:1-23:8 - Grady Schofield, Yousef Saad, James R. Chelikowsky:
Quantum algorithms for predicting the properties of complex materials. 24:1-24:8 - Lev D. Gelb:
Monte Carlo strategies for first-principles simulations of elemental systems. 25:1-25:7 - Eric Jankowski:
Computational challenges in nanoparticle partition function calculation. 26:1-26:2 - Brian F. Jewett, Jay C. Alameda, Robert B. Wilhelmson, Ann M. Syrowski:
Ensemble modeling of storm interaction with XSEDE. 27:1 - Colin Morningstar, J. Bulava, J. Foley, K. J. Juge, C. H. Wong:
Excited states in lattice QCD using the stochastic LapH method. 28:1-28:8 - Virginia Kuhn, Alan B. Craig, Ritu Arora:
Multiple concurrent queries on demand: large scale video analysis in a flash memory environment as a case for humanities supercomputing. 29:1-29:2 - Frank T. Willmore:
A toolkit for the analysis and visualization of free volume in materials. 30:1-30:6 - Margarete A. Jadamec, Magali I. Billen, Oliver Kreylos:
Three-dimensional simulations of geometrically complex subduction with large viscosity variations. 31:1-31:8 - Joseph R. Peterson, Jacqueline C. Beckvermit, Todd Harman, Martin Berzins, Charles A. Wight:
Multiscale modeling of high explosives for transportation accidents. 32:1-32:8 - Leopold Grinberg, Mingge Deng, Huan Lei, Joseph A. Insley, George Em Karniadakis:
Multiscale simulations of blood-flow: from a platelet to an artery. 33:1-33:7 - Brandon M. S. Erickson, Raminderjeet Singh, August E. Evrard, Matthew R. Becker, Michael T. Busha, Andrey V. Kravtsov, Suresh Marru, Marlon E. Pierce, Risa H. Wechsler:
A high throughput workflow environment for cosmological simulations. 34:1-34:8 - Bradley Pirtle, Ross Kimes, Amy McGovern, Rodger A. Brown:
Using the XSEDE supercomputing and visualization resources to improve tornado prediction using data mining. 35:1-35:2 - Jacek Jakowski, Bilel Hadri, Steven J. Stuart, Predrag Krstic, Stephan Irle, Dulma Nugawela, Sophya Garashchuk:
Optimization of density functional tight-binding and classical reactive molecular dynamics for high-throughput simulations of carbon materials. 36:1-36:7 - Yuxing Peng, Chris Knight, Philip D. Blood, Lonnie D. Crosby, Gregory A. Voth:
Extending parallel scalability of LAMMPS and multiscale reactive molecular simulations. 37:1-37:7
Software and software engineering track
- Scott Simmerman, Jingyuan Wang, James Osborne, Kimberly Shook, Jian Huang, William Godsoe, Theodore Simons:
Exploring similarities among many species distributions. 38:1-38:9 - Mark A. Miller, Wayne Pfeiffer, Terri Schwartz:
The CIPRES science gateway: enabling high-impact science for phylogenetics researchers with limited resources. 39:1-39:8 - Katherine A. Lawrence, Nancy Wilkins-Diehr:
Roadmaps, not blueprints: paving the way to science gateway success. 40:1-40:8 - Doug James, Carlos Rosales, Dan Stanzione:
Offline parallel debugging: a case study report. 41:1-41:2 - Emre H. Brookes, Raminderjeet Singh, Marlon E. Pierce, Suresh Marru, Borries Demeler, Mattia Rocco:
Ultrascan solution modeler: integrated hydrodynamic parameter and small angle scattering computation and fitting tools. 42:1-42:8 - Dennis G. Castleberry, Steven R. Brandt, Frank Löffler, Hari Krishnan:
The Prickly Pear Archive: a portable hypermedia for scholarly publication. 43:1-43:8 - Hari Krishnan, Dennis G. Castleberry, Steven R. Brandt:
Mojave: a development environment for the Cactus computational framework. 44:1-44:8 - Robert Henschel, Matthias Lieber, Le-Shin Wu, Phillip M. Nista, Brian J. Haas, Richard D. LeDuc:
Trinity RNA-Seq assembler performance optimization. 45:1-45:8 - Melissa Romanus, Pradeep Kumar Mantha, Matt McKenzie, Thomas C. Bishop, Emilio Gallicchio, André Merzky, Yaakoub El Khamra, Shantenu Jha:
The anatomy of successful ECSS projects: lessons of supporting high-throughput high-performance ensembles on XSEDE. 46:1-46:9 - Craig A. Stewart, Richard Knepper, James Ferguson, Felix Bachmann, Ian T. Foster, Andrew S. Grimshaw, Victor Hazlewood, David Lifka:
What is campus bridging and what is XSEDE doing about it? 47:1-47:8 - Jay Alameda, Wyatt Spear, Jeffrey L. Overbey, Kevin A. Huck, Gregory R. Watson, Beth Tibbitts:
The Eclipse parallel tools platform: toward an integrated development environment for XSEDE resources. 48:1-48:8 - Mats Rynge, Scott Callaghan, Ewa Deelman, Gideon Juve, Gaurang Mehta, Karan Vahi, Philip J. Maechling:
Enabling large-scale scientific workflows on petascale resources using MPI master/worker. 49:1-49:8 - Ian T. Foster, Rajkumar Kettimuthu, Stuart Martin, Steven Tuecke, Daniel Milroy, Brock Palen, Thomas Hauser, Jazcek Braden:
Campus bridging made easy via Globus services. 50:1-50:8
Education, outreach and training track
- Steven I. Gordon, Judith D. Gardiner, Brian Guilfoos:
Computational science certificates for the current workforce: lessons learned. 51:1-51:4 - Rubin H. Landau, Manuel J. Paez, Cristian C. Bordeianu:
A blended, multimodal access eTextBook in computational physics. 52:1-52:7 - David L. Hart:
Longitudinal user and usage patterns in the XSEDE user community. 53:1-53:7 - Bina Ramamurthy, Jessica Poulin, Katharina Dittmar:
Cloud-enabling biological simulations for scalable and sustainable access: an experience report. 54:1-54:2 - Kristy A. Kallback-Rose, Kurt Seiffert, Danko Antolovic, Therese Miller, Robert Ping, Craig Stewart:
Conducting K-12 outreach to evoke early interest in IT, science, and advanced technology. 55:1-55:8 - Patricia Jacobs:
Computing MATTERS: building pathways to cyberinfrastructure. 56:1-56:4 - David R. Mattson, R. Jay Mashl, Edee Norman Wiziecki:
Enhancing chemistry teaching and learning through cyberinfrastructure. 57:1-57:5 - Michael J. Boyles, Albert M. William, Chauncey Frend, Chris Eller:
Using stereoscopic 3D videos to inform the public about the benefits of computational science. 58:1-58:8 - Venkatesh Merwade, Wei Feng, Lan Zhao, Carol X. Song:
WaterHUB: a resource for students and educators for learning hydrology. 59:1-59:4 - Subrata Bhattacharjee, Christopher Paolini, Mahesh Kumar:
A learning outcome driven cyber infrastructure for thermodynamics education. 60:1-60:8 - Jerome E. Mitchell, Judy Qiu, Massimo Canonio, Shantenu Jha, Linda B. Hayden, Barbara Ann O'Leary, Renato Figueiredo, Geoffrey C. Fox:
FutureGrid education: using case studies to develop a curriculum for communicating parallel and distributed computing concepts. 61:1-61:5 - Lizanne DeStefano, Lorna Rivera:
The initial role of evaluation in a large-scale multi-site project. 62:1-62:7 - M. Farrukh Khan, Daniel Vrinceanu, Kiran Chilakamarri, Christopher John Tymczak:
Minority student involvement in computational science research at Texas Southern University. 63:1-63:4 - Diane A. Baxter, Beth Simon:
Building a partnership for computer science education. 64:1-64:5 - Jim Basney, Randy Butler, Dan Fraser, Suresh Marru, Craig Stewart:
Security for science gateways and campus bridging: XSEDE12 panel. 65:1 - Ian T. Foster, Vas Vasiliadis:
SaaS for science: the path to reality for research in the cloud. 66:1 - Richard Knepper, Guy Almes, Thorbjörn Axelsson, Paul Muzio, Joel Zysman:
Campus bridging pilot project reports: XSEDE12 panel. 67:1 - Beth Plale:
Managing the long tail of science: data and communities. 68:1-68:2
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