2. WABI 2002: Rome, Italy

@proceedings{DBLP:conf/wabi/2002,
  editor    = {Roderic Guig{\'o} and
               Dan Gusfield},
  title     = {Algorithms in Bioinformatics, Second International Workshop,
               WABI 2002, Rome, Italy, September 17-21, 2002, Proceedings},
  booktitle = {WABI},
  publisher = {Springer},
  series    = {Lecture Notes in Computer Science},
  volume    = {2452},
  year      = {2002},
  isbn      = {3-540-44211-1},
  bibsource = {DBLP, http://dblp.uni-trier.de}
}

• L. R. Grate, Chiranjib Bhattacharyya, Michael I. Jordan, I. Saira Mian:
  Simultaneous Relevant Feature Identification and Classification in High-Dimensional Spaces. 1-9
  
• Miklós Csürös, Aleksandar Milosavljevic:
  Pooled Genomic Indexing (PGI): Mathematical Analysis and Experiment Design. 10-28
  
• Romeo Rizzi, Vineet Bafna, Sorin Istrail, Giuseppe Lancia:
  Practical Algorithms and Fixed-Parameter Tractability for the Single Individual SNP Haplotyping Problem. 29-43
  
• Russell Schwartz, Andrew G. Clark, Sorin Istrail:
  Methods for Inferring Block-Wise Ancestral History from Haploid Sequences. 44-59
  
• Martin Reczko, Petko Fiziev, Eike Staub, Artemis G. Hatzigeorgiou:
  Finding Signal Peptides in Human Protein Sequences Using Recurrent Neural Networks. 60-67
  
• Nathan Edwards, Ross Lippert:
  Generating Peptide Candidates from Amino-Acid Sequence Databases for Protein Identification via Mass Spectrometry. 68-81
  
• Zhi-Zhong Chen, Tao Jiang, Guo-Hui Lin, Jianjun Wen, Dong Xu, Ying Xu:
  Improved Approximation Algorithms for NMR Spectral Peak Assignment. 82-96
  
• Louxin Zhang, Bin Ma, Lusheng Wang:
  Efficient Methods for Inferring Tandem Duplication History. 97-111
  
• Li-San Wang:
  Genome Rearrangement Phylogeny Using Weighbor. 112-125
  
• Aaron L. Halpern, Daniel H. Huson, Knut Reinert:
  Segment Match Refinement and Applications. 126-139
  
• Ezekiel F. Adebiyi, Michael Kaufmann:
  Extracting Common Motifs under the Levenshtein Measure: Theory and Experimentation. 140-156
  
• Michael H. Goldwasser, Ming-Yang Kao, Hsueh-I Lu:
  Fast Algorithms for Finding Maximum-Density Segments of a Sequence with Applications to Bioinformatics. 157-171
  
• Mariusz Milik, Sándor Szalma, Krzysztof A. Olszewski:
  FAUST: An Algorithm for Extracting Functionally Relevant Templates from Protein Structures. 172-184
  
• Dina Duhovny, Ruth Nussinov, Haim J. Wolfson:
  Efficient Unbound Docking of Rigid Molecules. 185-200
  
• Raymond Wheeler:
  A Method of Consolidating and Combining EST and mRNA Alignments to a Genome to Enumerate Supported Splice Variants. 201-209
  
• Mihaela Pertea, Steven Salzberg:
  A Method to Improve the Performance of Translation Start Site Detection and Its Application for Gene Finding. 210-219
  
• Christian N. S. Pedersen, Tejs Scharling:
  Comparative Methods for Gene Structure Prediction in Homologous Sequences. 220-234
  
• Maxim Shatsky, Ruth Nussinov, Haim J. Wolfson:
  MultiProt - A Multiple Protein Structural Alignment Algorithm. 235-250
  
• Emily Rocke:
  A Hybrid Scoring Function for Protein Multiple Alignment. 251-262
  
• Yonatan Bilu, Michal Linial:
  Functional Consequences in Metabolic Pathways from Phylogenetic Profiles. 263-276
  
• Esko Ukkonen:
  Finding Founder Sequences from a Set of Recombinants. 277-286
  
• Luay Nakhleh, Usman Roshan, Lisa Vawter, Tandy Warnow:
  Estimating the Deviation from a Molecular Clock. 287-299
  
• Yasmine Ajana, Jean-François Lefebvre, Elisabeth R. M. Tillier, Nadia El-Mabrouk:
  Exploring the Set of All Minimal Sequences of Reversals - An Application to Test the Replication-Directed Reversal Hypothesis. 300-315
  
• Niklas Eriksen:
  Approximating the Expected Number of Inversions Given the Number of Breakpoints. 316-330
  
• Gene Myers, Richard Durbin:
  Invited Lecture - Accelerating Smith-Waterman Searches. 331-342
  
• Bernard M. E. Moret, Usman Roshan, Tandy Warnow:
  Sequence-Length Requirements for Phylogenetic Methods. 343-356
  
• Richard Desper, Olivier Gascuel:
  Fast and Accurate Phylogeny Reconstruction Algorithms Based on the Minimum-Evolution Principle. 357-374
  
• David Bryant, Vincent Moulton:
  NeighborNet: An Agglomerative Method for the Construction of Planar Phylogenetic Networks. 375-391
  
• Hon Wai Leong, Franco P. Preparata, Wing-Kin Sung, Hugo Willy:
  On the Control of Hybridization Noise in DNA Sequencing-by-Hybridization. 392-403
  
• Steven Skiena, Sagi Snir:
  Restricting SBH Ambiguity via Restriction Enzymes. 404-417
  
• Ehud Y. Shapiro:
  Invited Lecture - Molecule as Computation: Towards an Abstraction of Biomolecular Systems. 418
  
• Piotr Berman, Paul Bertone, Bhaskar DasGupta, Mark Gerstein, Ming-Yang Kao, Michael Snyder:
  Fast Optimal Genome Tiling with Applications to Microarray Design and Homology Search. 419-433
  
• Sven Rahmann:
  Rapid Large-Scale Oligonucleotide Selection for Microarrays. 434
  
• Andrew B. Kahng, Ion I. Mandoiu, Pavel A. Pevzner, Sherief Reda, Alexander Zelikovsky:
  Border Length Minimization in DNA Array Design. 435-448
  
• Mohamed Ibrahim Abouelhoda, Stefan Kurtz, Enno Ohlebusch:
  The Enhanced Suffix Array and Its Applications to Genome Analysis. 449-463
  
• Anne Bergeron, Sylvie Corteel, Mathieu Raffinot:
  The Algorithmic of Gene Teams. 464-476
  
• Liling L. Warren, Ben Hui Liu:
  Combinatorial Use of Short Probes for Differential Gene Expression Profiling. 477-490
  
• Doron Lipson, Peter Webb, Zohar Yakhini:
  Designing Specific Oligonucleotide Probes for the Entire S. cerevisiae Transcriptome. 491-505
  
• Ziv Bar-Joseph, Erik D. Demaine, David K. Gifford, Angèle M. Hamel, Tommi Jaakkola, Nathan Srebro:
  K-ary Clustering with Optimal Leaf Ordering for Gene Expression Data. 506-520
  
• Bernard M. E. Moret, Adam C. Siepel, Jijun Tang, Tao Liu:
  Inversion Medians Outperform Breakpoint Medians in Phylogeny Reconstruction from Gene-Order Data. 521-536
  
• Roderic D. M. Page:
  Modified Mincut Supertrees. 537-552
  

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