SWAT4LS 2010: Berlin, Germany

Papers

• Matthew Holford, James P. McCusker, Kei-Hoi Cheung, Michael Krauthammer:
  Analysis of Cancer Omics Data In A Semantic Web Framework.
  
• Anna-Lena Lamprecht, Stefan Naujokat, Bernhard Steffen, Tiziana Margaria:
  Constraint-Guided Workflow Composition Based on the EDAM Ontology.
  
• Rafael Berlanga Llavori, Ernesto Jiménez-Ruiz, Victoria Nebot:
  Building Conceptual Spaces for Exploring and Linking Biomedical Resources.
  
• Adrian Paschke, Zhili Zhao:
  Process Makna - A Semantic Wiki for Scientific Workflows.
  
• Kenneth McLeod, Gus Ferguson, Albert Burger:
  Argudas: Arguing with Gene Expression Information.
  
• Samuel Croset, Christoph Grabmüller, Chen Li, Silvestras Kavaliauskas, Dietrich Rebholz-Schuhmann:
  The CALBC RDF Triple Store: Retrieval over Large Literature Content.
  
• Simon Jupp, Matthew Horridge, Luigi Iannone, Julie Klein, Stuart Owen, Joost Schanstra, Robert Stevens, Katy Wolstencroft:
  Populous: A Tool for Populating Templates for OWL Ontologies.
  
• Sylvie Ranwez, Vincent Ranwez, Mohameth-François Sy, Jacky Montmain, Michel Crampes:
  User Centered and Ontology Based Information Retrieval System for Life Sciences.
  
• Alejandra González Beltrán, Ben Tagger, Anthony Finkelstein:
  Ontology-based Queries over Cancer Data.
  
• Abdelaali Briache, Kamar Marrakchi, Amine Kerzazi, Ismael Navas Delgado, José Francisco Aldana Montes, Badr Din Rossi Hassani, Khalid Lairini:
  YeastMed: an XML-Based System for Biological Data Integration of Yeast.
  
• Theodore Dalamagas, Tryfon Farmakakis, Manolis Maragkakis, Artemis G. Hatzigeorgiou:
  FreePub: Collecting and Organizing Scientific Material Using Mindmaps.
  
• Vladimir Mironov, Nirmala Seethappan, Ward Blondé, Erick Antezana, Bjorn Lindi, Martin Kuiper:
  Benchmarking Triple Stores with Biological Data.
  
• Jasmin Opitz, Bijan Parsia, Ulrike Sattler:
  Evaluating Modelling Approaches for Medical Image Annotations.
  

Demos

• Adianto Wibisono, Marco Roos, M. Scott Marshall:
  The AIDA Toolkit - a Tool for Users and Developers.
  
• Catherine Canevet, Artem Lysenko, Andrea Splendiani, Matthew R. Pocock, Christopher J. Rawlings:
  Analysis and Visualisation of RDF Resources in Ondex.
  
• Richard Huber, Kirsten Hantelmann, Alexandru Todor, Sebastian Krebs, Ralf Heese, Adrian Paschke:
  Use of Semantic Technologies for the Development of a Dynamic Trajectories Generator in a Semantic Chemistry eLearning Platform.
  
• E. Luke McCarthy, Benjamin P. Vandervalk, Mark D. Wilkinson:
  SPARQL Assist Language-Neutral Query Composer.
  

Posters

• Paul Boekschoten, Kees Burger, Barend Mons, Christine Chichester:
  Import of ENZYME Data into the ConceptWiki and its Representation as RDF.
  
• Adrian Groza, Radu Balaj:
  Using Semantic Wikis for Structured Argument in Medical Domain.
  
• Ernesto Jiménez-Ruiz, Bernardo Cuenca Grau, Rafael Berlanga Llavori, Dietrich Rebholz-Schuhmann:
  First Steps in the Logic-based Assessment of Post-composed Phenotypic Descriptions.
  
• Jerven Bolleman, Alain Gateau, Sebastien Gehant, Nicole Redaschi:
  Provenance and Evidence in UniProtKB.
  
• Julia Dmitrieva, Fons J. Verbeek:
  Creating a new Ontology: a Modular Approach.
  
• Halit Erdogan, Umut Öztok, Yelda Erdem, Esra Erdem:
  Querying Biomedical Ontologies in Natural Language using Answer Set Programming.
  
• Douglas G. Howe, Christian Pich:
  Ontology Usage at ZFIN.
  
• Adrian Paschke, Zhili Zhao:
  Rule Responder: A Rule-Based Semantic eScience Service Infrastructure.
  
• Ning Kang, Rogier Barendse, Zubair Afzal, Bharat Singh, Martijn J. Schuemie, Erik M. van Mulligen, Jan A. Kors:
  A Concept Annotation System for Clinical Records.
  
• Iker Huerga, Ainhoa Serna, Jon Kepa Gerrikagoitia:
  Fundamentals of Semantic Web Technologies in Medical Environments: A Case in Breast Cancer Risk Estimation.
  
• Maria Rüther, Thomas Bandholtz, Antoine Logean:
  Linked Environment Data for the Life Sciences.
  
• Pablo López-García:
  Are SNOMED CT Browsers Ready for Institutions? Introducing MySNOM.
  
• María Pérez Catalán, Rafael Berlanga Llavori, Ismael Sanz:
  A Semantic Approach for the Requirement-driven Discovery of Web Services in the Life Sciences.
  
• Pedro Almeida, Paulo Gomes, Francisco Sales, Ana Nogueira, António Dourado:
  Ontology and Knowledge Management System on Epilepsy and Epileptic Seizures.
  
• Alexandru Todor, Adrian Paschke, Stephan Heineke:
  ChemCloud: Chemical e-Science Information Cloud.
  
• Falko Krause, Marvin Schulz, Timo Lubitz, Wolfram Liebermeister:
  semanticsSBML 2.0 - A Collection of Online Services for SBML Models.
  
• He Tan:
  A Study on the Relation between Linguistics-oriented and Domain-specific Semantics.
  
• Eric Leclercq, Marinette Savonnet:
  Scientific Collaborations: Principles of WikiBridge Design.
  

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