SWAT4LS 2009: Amsterdam, The Netherlands
M. Scott Marshall, Albert Burger, Paolo Romano, Adrian Paschke, Andrea Splendiani (Eds.): Proceedings of the Workshop on Semantic Web Applications and Tools for Life Sciences, Amsterdam, The Netherlands, November 20, 2009. CEUR-WS.org 2009 CEUR Workshop Proceedings 559
Papers
Matthias Löbe, Magnus Knuth, Roland Mücke: TIM: A Semantic Web Application for the Specification of Metadata Items in Clinical Research.
Sonja Zillner: Towards the Ontology-based Classification of Lymphoma Patients using Semantic Image Annotations.
Egon L. Willighagen, Jarl E. S. Wikberg: Linking Open Drug Data to Cheminformatics and Proteochemometrics.
Hammad Afzal, James M. Eales, Robert Stevens, Goran Nenadic: Mining Semantic Networks of Bioinformatics e-Resources from the Literature.
Anna-Lena Lamprecht, Stefan Naujokat, Tiziana Margaria, Bernhard Steffen: Semantics-Based Composition of EMBOSS Services with Bio-jETI.
Syed Hamid Tirmizi, Stuart Aitken, Dilvan A. Moreira, Chris Mungall, Juan Sequeda, Nigam H. Shah, Daniel P. Miranker: OBO & OWL: Roundtrip Ontology Transformations.
Highlight Posters

Ernesto Jiménez-Ruiz, Bernardo Cuenca Grau, Rafael Berlanga Llavori, Ian Horrocks: Towards a Logic-based Assessment of the compatibility of UMLS sources.
Simon N. Twigger, Joey Geiger, Jennifer R. Smith: Using the NCBO Web Services for Concept Recognition and Ontology Annotation of Expression Datasets.
Demos
Stephen D. Larson, Sarah Maynard, Fahim T. Imam, Maryann E. Martone: NeuroLex.org - A semantic wiki for neuroinformatics based on the NIF Standard Ontology.
Marco Brandizi, Michaela Gündel, Ciro Scognamiglio, Andrea Splendiani: DC-THERA Directory, a Knowledge Management System for the support of the European Dendritic Cell Immunology Community.
Ernesto Jiménez-Ruiz, Bernardo Cuenca Grau, Ian Horrocks, Rafael Berlanga Llavori: ContentCVS: A CVS-based Collaborative ONTology ENgineering Tool.

Posters
Nico Adams, Paula de Matos, Adriano Dekker, Marcus Ennis, Janna Hastings, Kenneth Haug, Duncan Hull, Zara Josephs, Pablo Moreno, Steve Turner, Christoph Steinbeck: Semantic access to chemistry data with the ChEBI ontology and web services.
Yu Lin, Hiroshi Tarui, Peter Simons: From Ontology for Genetic Interval (OGI) to Sequence Assembly - Ontology applying to next generation sequencing.
Catherine Canevet, Andrea Splendiani, Shao-Chih Kuo, Robert Stevens, Phillip W. Lord, Christopher J. Rawlings: Ondex: data integration and visualisation for the Semantic Web.
José Antonio Miñarro-Giménez, Marisa Madrid, Jesualdo Tomás Fernández-Breis: Semantic integration and exploitation of orthology information and genetic disorders.
Amine Kerzazi, Ismael Navas Delgado, José Francisco Aldana Montes: Towards an Ontology-based Mediation Framework for Integrating Biological Data.
Joris Slob, Amalia Kallergi, Fons J. Verbeek: Observations on Semantic Annotation of Microscope Images for Life Sciences.
Pietro Hiram Guzzi, Mario Cannataro: Using ontologies for querying and analysing protein-protein interaction data.



