SMBM 2010: Cambridge, United Kingdom

Full papers

• Asma Ben Abacha, Pierre Zweigenbaum:
  Automatic Extraction of semantic relations between medical entities: Application to the treatment relation.
  
• Nigel Collier:
  Towards cross-lingual alerting for bursty epidemic events.
  
• Nigel Collier, Nguyen Truong Son, Mai Nguyen Thi Ngoc:
  OMG U got flu? Analysis of shared health messages for bio-surveillance.
  
• Robert Hoehndorf, Axel-Cyrille Ngonga Ngomo, Sampo Pyysalo, Tomoko Ohta, Anika Oellrich, Dietrich Rebholz-Schuhmann:
  Applying ontology design patterns to the implementation of relations in GENIA.
  
• Jung-jae Kim, Dietrich Rebholz-Schuhmann:
  Improving the extraction of complex regulatory events from scientific text by using ontology-based inference.
  
• Tomoko Ohta, Sampo Pyysalo, Makoto Miwa, Jun-ichi Tsujii:
  Event extraction for DNA methylation.
  
• Sampo Pyysalo, Tomoko Ohta, Jun-ichi Tsujii:
  An Analysis of gene/protein associations at PubMed scale.
  
• Dietrich Rebholz-Schuhmann, Antonio Jimeno-Yepes, Chen Li, Senay Kafkas, Ian Lewin, Ning Kang, Peter Corbett, David Milward, Ekaterina Buyko, Elena Beisswanger, Kerstin Hornbostel, Alexandre Kouznetsov, René Witte, Jonas B. Laurila, Christopher J. O. Baker, Chen-Ju Kuo, Simon Clematide, Fabio Rinaldi, Richárd Farkas, György Móra, Kazuo Hara, Laura Inés Furlong, Michael Rautschka, Mariana L. Neves, Alberto D. Pascual-Montano, Qi Wei, Nigel Collier, Md. Faisal Mahbub Chowdhury, Alberto Lavelli, Rafael Berlanga Llavori, Roser Morante, Vincent Van Asch, Walter Daelemans, José Luís Marina, Erik M. van Mulligen, Jan A. Kors, Udo Hahn:
  Assessment of NER solutions against the first and second CALBC silver standard corpus.
  
• Erik Velldal:
  Detecting uncertainty in biomedical literature: a simple disambiguation approach using sparse random indexing.
  
• Veronika Vincze, György Szarvas, György Móra, Tomoko Ohta, Richárd Farkas:
  Linguistic scope-based and biological event-based speculation and negation annotations in the Genia Event and BioScope corpora.
  
• Katsumasa Yoshikawa, Sebastian Riedel, Tsutomu Hirao, Masayuki Asahara, Yuji Matsumoto:
  Coreference based event-argument relation extraction on biomedical text.
  

Short papers

• Emilia Apostolova, Noriko Tomuro, Dina Demner-Fushman:
  Identifying contextual information in clinical texts: a study of two domains.
  
• Chong Min Lee, Manabu Torii, Zhang-Zhi Hu, Yi-Ting Tsai, Jinesh Shah, Hongfang Liu:
  Evaluating gene/protein name tagging and mapping for article retrieval.
  
• Haibin Liu, Vlado Keselj, Christian Blouin:
  Biological event extraction using subgraph matching.
  
• Jonathan Mortensen, Olivier Bodenreider:
  Comparing pharmacologic classes in NDF-RT and SNOMED CT.
  
• György Móra, Richárd Farkas:
  Species taxonomy for gene name normalization.
  
• Stefania Rubrichi, Alex Spengler, Patrick Gallinari, Silvana Quaglini:
  Preventing adverse drug events by extracting information from drug fact sheets.
  
• Farzaneh Sarafraz, Goran Nenadic:
  Identification of negated regulation events in the literature: exploring the feature space.
  
• Daniel Schober, Martin Boeker, Stefan Schulz, Ilinca Tudose:
  Developing DCO: The DebugIT core ontology for antibiotics resistence modelling.
  
• Sine Zambach, Tine Lassen:
  A lexical framework for semantic annotation of positive and negative regulation relations in biomedical pathways.
  

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