Eleazar Eskin, Trey Ideker, Benjamin J. Raphael, Christopher T. Workman (Eds.):
Systems Biology and Regulatory Genomics, Joint Annual RECOMB 2005 Satellite Workshops on Systems Biology and on Regulatory Genomics, San Diego, CA, USA; December 2-4, 2005, Revised Selected Papers.
Lecture Notes in Computer Science 4023 Springer 2006, ISBN 978-3-540-48293-2 
- Weihui Wu, Yongling Song, Shouguang Jin, Su-Shing Chen:
An Interactive Map of Regulatory Networks of Pseudomonas aeruginosa Genome.
1-10
- David L. Dill, Merrill Knapp, Pamela Gage, Carolyn L. Talcott, Keith Laderoute, Patrick Lincoln:
The Pathalyzer: A Tool for Analysis of Signal Transduction Pathways.
11-22
- Elena Zotenko, Katia S. Guimarães, Raja Jothi, Teresa M. Przytycka:
Decomposition of Overlapping Protein Complexes: A Graph Theoretical Method for Analyzing Static and Dynamic Protein Associations.
23-38
- Silpa Suthram, Tomer Shlomi, Eytan Ruppin, Roded Sharan, Trey Ideker:
Comparison of Protein-Protein Interaction Confidence Assignment Schemes.
39-50
- Michal Lapidot, Yitzhak Pilpel:
Characterization of the Effects of TF Binding Site Variations on Gene Expression Towards Predicting the Functional Outcomes of Regulatory SNPs.
51-61
- Michiel J. L. de Hoon, Dennis Vitkup:
Comparative Systems Biology of the Sporulation Initiation Network in Prokaryotes.
62-69
- Haseong Kim, Jae K. Lee, Taesung Park:
Improvement of Computing Times in Boolean Networks Using Chi-square Tests.
70-79
- Guandong Wang, Weixiong Zhang:
Build a Dictionary, Learn a Grammar, Decipher Stegoscripts, and Discover Genomic Regulatory Elements.
80-94
- David Kulp, Manjunatha Jagalur:
Causal Inference of Regulator-Target Pairs by Gene Mapping of Expression Phenotypes.
95-106
- Orna Man, Joel L. Sussman, Yitzhak Pilpel:
Examination of the tRNA Adaptation Index as a Predictor of Protein Expression Levels.
107-118
- Gürkan Bebek, Petra Berenbrink, Colin Cooper, Tom Friedetzky, Joseph H. Nadeau, Süleyman Cenk Sahinalp:
Improved Duplication Models for Proteome Network Evolution.
119-137
- Chih-Yu Chen, Von-Wun Soo, Chi-Li Kuo:
Application of Expectation Maximization Clustering to Transcription Factor Binding Positions for cDNA Microarray Analysis.
138-149
- Elissa J. Chesler, Michael A. Langston:
Combinatorial Genetic Regulatory Network Analysis Tools for High Throughput Transcriptomic Data.
150-165
- Chien-Hung Huang, Jywe-Fei Fang, Jeffrey J. P. Tsai, Ka-Lok Ng:
Topological Robustness of the Protein-Protein Interaction Networks.
166-177
- Sudhakar Jonnalagadda, Rajagopalan Srinivasan:
A Bayesian Approach for Integrating Transcription Regulation and Gene Expression: Application to Saccharomyces Cerevisiae Cell Cycle Data.
178-187
- Wolfgang P. Lehrach, Dirk Husmeier, Christopher K. I. Williams:
Probabilistic in Silico Prediction of Protein-Peptide Interactions.
188-197
- Sing-Hoi Sze, Xiaoyan Zhao:
Improved Pattern-Driven Algorithms for Motif Finding in DNA Sequences.
198-211
- Huiquan Wang, Craig J. Benham:
Annotation of Promoter Regions in Microbial Genomes Based on DNA Structural and Sequence Properties.
212-224
- Li-San Wang, Shane T. Jensen, Sridhar Hannenhalli:
An Interaction-Dependent Model for Transcription Factor Binding.
225-234
- Xuefeng Zhou, Jianhua Ruan, Guandong Wang, Weixiong Zhang:
Computational Characterization and Identification of Core Promoters of MicroRNA Genes in C. elegans , H. sapiens and A. thaliana.
235-248
- Aviv Mezer, Eran Bosis, Uri Ashery, Esther Nachliel, Menachem Gutman:
A Comprehensive Kinetic Model of the Exocytotic Process: Evaluation of the Reaction Mechanism.
249-257
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