8. RECOMB 2004: San Diego, CA, USA

@proceedings{DBLP:conf/recomb/2004,
  editor    = {Philip E. Bourne and
               Dan Gusfield},
  title     = {Proceedings of the Eighth Annual International Conference on
               Computational Molecular Biology, 2004, San Diego, California,
               USA, March 27-31, 2004},
  booktitle = {RECOMB},
  publisher = {ACM},
  year      = {2004},
  isbn      = {1-58113-755-9},
  bibsource = {DBLP, http://dblp.uni-trier.de}
}

• Deborah Nickerson:
  SNPing in the human genome. 1
  
• Gad Kimmel, Ron Shamir:
  Maximum likelihood resolution of multi-block genotypes. 2-9
  
• Eran Halperin, Richard M. Karp:
  Perfect phylogeny and haplotype assignment. 10-19
  
• Jing Li, Tao Jiang:
  An exact solution for finding minimum recombinant haplotype configurations on pedigrees with missing data by integer linear programming. 20-29
  
• David Sankoff, Phil Trinh:
  Chromosomal breakpoint re-use in the inference of genome sequence rearrangement. 30-35
  
• Niko Beerenwinkel, Jörg Rahnenführer, Martin Däumer, Daniel Hoffmann, Rolf Kaiser, Joachim Selbig, Thomas Lengauer:
  Learning multiple evolutionary pathways from cross-sectional data. 36-44
  
• Richard M. Karp:
  Algorithms for inferring cis-regulatory structures and protein interaction networks. 45
  
• Ryan H. Lilien, Brian W. Stevens, Amy C. Anderson, Bruce Randall Donald:
  A novel ensemble-based scoring and search algorithm for protein redesign, and its application to modify the substrate specificity of the gramicidin synthetase a phenylalanine adenylation enzyme. 46-57
  
• Chris Bailey-Kellogg, Sheetal Chainraj, Gopal Pandurangan:
  A random graph approach to NMR sequential assignment. 58-67
  
• Xiaoyue Zhao, Haiyan Huang, Terence P. Speed:
  Finding short DNA motifs using permuted markov models. 68-75
  
• Yanni Sun, Jeremy Buhler:
  Designing multiple simultaneous seeds for DNA similarity search. 76-84
  
• John D. Kececioglu, Dean Starrett:
  Aligning alignments exactly. 85-96
  
• Elizabeth A. Winzeler, Karine G. Le Roch, Yingyao Zhou, Peter L. Blair, Muni Grainger, J. Kathleen Moch, J. David Haynes, Patricia De la Vega, Anthony A. Holder, Serge Batalov, Daniel J. Carucci:
  Systems biology and malaria. 97
  
• Zhijin Wu, Rafael A. Irizarry:
  Stochastic models inspired by hybridization theory for short oligonucleotide arrays. 98-106
  
• Sabrina Ledent, Stéphane Robin:
  Checking homogeneity of motifs' distribution in heterogenous sequences. 107-114
  
• Eleazar Eskin:
  From profiles to patterns and back again: a branch and bound algorithm for finding near optimal motif profiles. 115-124
  
• Francis Y. L. Chin, Henry C. M. Leung, Siu-Ming Yiu, Tak Wah Lam, Roni Rosenfeld, Wai Wan Tsang, David K. Smith, Y. Jiang:
  Finding motifs for insufficient number of sequences with strong binding to transcription facto. 125-132
  
• Alberto Policriti, Nicola Vitacolonna, Michele Morgante, Andrea Zuccolo:
  Structured motifs search. 133-139
  
• William McGinnis:
  Evolutionary change in developmental genetic networks. 140
  
• Eran Segal, Roded Sharan:
  A discriminative model for identifying spatial cis-regulatory modules. 141-149
  
• Martin Farach-Colton, Yang Huang, John L. L. Woolford:
  Discovering temporal relations in molecular pathways using protein-protein interactions. 150-156
  
• Hanchuan Peng, Eugene W. Myers:
  Comparing in situ mRNA expression patterns of drosophila embryos. 157-166
  
• Alexis Battle, Eran Segal, Daphne Koller:
  Probabilistic discovery of overlapping cellular processes and their regulation. 167-176
  
• Adam C. Siepel, David Haussler:
  Computational identification of evolutionarily conserved exons. 177-186
  
• Sourav Chatterji, Lior Pachter:
  Multiple organism gene finding by collapsed gibbs sampling. 187-193
  
• Martin Nowak:
  Somatic evolution of cancer. 194
  
• Michael Erdmann:
  Protein similarity from knot theory and geometric convolution. 195-204
  
• Yih-En Andrew Ban, Herbert Edelsbrunner, Johannes Rudolph:
  Interface surfaces for protein-protein complexes. 205-212
  
• Pavel A. Pevzner, Haixu Tang, Glenn Tesler:
  De novo repeat classification and fragment assembly. 213-222
  
• Ydo Wexler, Zohar Yakhini, Yechezkel Kashi, Dan Geiger:
  Finding approximate tandem repeats in genomic sequences. 223-232
  
• Ross Lippert, Xiaoyue Zhao, Liliana Florea, Clark M. Mobarry, Sorin Istrail:
  Finding anchors for genomic sequence comparison. 233-241
  
• Andrew Fire:
  RNAi, genome ultrastructure, and other unexpected tales from the analysis of genetic silencing. 242
  
• Zasha Weinberg, Walter L. Ruzzo:
  Faster genome annotation of non-coding RNA families without loss of accuracy. 243-251
  
• Xinyu Tang, Bonnie Kirkpatrick, Shawna L. Thomas, Guang Song, Nancy M. Amato:
  Using motion planning to study RNA folding kinetics. 252-261
  
• Haifeng Li, Tao Jiang:
  A class of edit kernels for SVMs to predict translation initiation sites in eukaryotic mRNAs. 262-271
  
• Xin He, Michael H. Goldwasser:
  Identifying conserved gene clusters in the presence of orthologous groups. 272-280
  
• Russell F. Doolittle:
  Fifty years of sequence analysis: what have we learned? 281
  
• Roded Sharan, Trey Ideker, Brian P. Kelley, Ron Shamir, Richard M. Karp:
  Identification of protein complexes by comparative analysis of yeast and bacterial protein interaction data. 282-289
  
• Leonid Meyerguz, David Kempe, Jon M. Kleinberg, Ron Elber:
  The evolutionary capacity of protein structures. 290-297
  
• Matthew Menke, Eben Scanlon, Jonathan King, Bonnie Berger, Lenore Cowen:
  Wrap-and-pack: a new paradigm for beta structural motif recognition with application to recognizing beta trefoils. 298-307
  
• Jun Huan, Wei Wang, Deepak Bandyopadhyay, Jack Snoeyink, Jan Prins, Alexander Tropsha:
  Mining protein family specific residue packing patterns from protein structure graphs. 308-315
  
• Pawel Górecki:
  Reconciliation problems for duplication, loss and horizontal gene transfer. 316-325
  
• Lars Arvestad, Ann-Charlotte Berglund, Jens Lagergren, Bengt Sennblad:
  Gene tree reconstruction and orthology analysis based on an integrated model for duplications and sequence evolution. 326-335
  
• David Lee, Alastair Grant, Ian Sillitoe, Mark Dibley, Juan Garcia Ranea, Christine A. Orengo:
  A structural perspective on genome evolution. 336
  
• Luay Nakhleh, Tandy Warnow, C. Randal Linder:
  Reconstructing reticulate evolution in species: theory and practice. 337-346
  
• Michael T. Hallett, Jens Lagergren, Ali Tofigh:
  Simultaneous identification of duplications and lateral transfers. 347-356
  
• Carlos Bustamante:
  Recent advances on the manipulation of single biomolecules. 357
  

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