Proceedings of the Fourth Annual International Conference on Computational Molecular Biology, RECOMB 2000, April 8-11, 2000, Tokyo, Japan. ACM, 2000

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  Tatsuya Akutsu, Hiroki Arimura, Shinichi Shimozono: On approximation algorithms for local multiple alignment. 1-7
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  Tatsuya Akutsu, Satoru Miyano, Satoru Kuhara: Algorithms for identifying Boolean networks and related biological networks based on matrix multiplication and fingerprint function. 8-14
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  Ernst Althaus, Oliver Kohlbacher, Hans-Peter Lenhof, Peter Müller: A combinatorial approach to protein docking with flexible side-chains. 15-24
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  Alberto Apostolico, Gill Bejerano: Optimal amnesic probabilistic automata or how to learn and classify proteins in linear time and space. 25-32
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  Christopher Bailey-Kellogg, Alik Widge, John J. Kelley, Marcelo J. Berardi, John H. Bushweller, Bruce Randall Donald: The NOESY jigsaw: automated protein secondary structure and main-chain assignment from sparse, unassigned NMR data. 33-44
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  Serafim Batzoglou, Bonnie Berger, Jill P. Mesirov, Eric S. Lander: Sequencing a genome by walking with clone-end sequences: a mathematical analysis (abstract). 45
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  Serafim Batzoglou, Lior Pachter, Jill P. Mesirov, Bonnie Berger, Eric S. Lander: Human and mouse gene structure: comparative analysis and application to exon prediction. 46-53
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  Amir Ben-Dor, Laurakay Bruhn, Nir Friedman, Iftach Nachman, Michèl Schummer, Zohar Yakhini: Tissue classification with gene expression profiles. 54-64
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  Amir Ben-Dor, Richard M. Karp, Benno Schwikowski, Zohar Yakhini: Universal DNA tag systems: a combinatorial design scheme. 65-75
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  Jadwiga R. Bienkowska, Lihua Yu, Sophia Zarakhovich, Robert G. Rogers, Temple F. Smith: Comprehensive statistical method for protein fold recognition. 76-85
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  Ralf Bundschuh: An analytic approach to significance assessment in local sequence alignment with gaps. 86-95
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  Kevin Chen, Dannie Durand, Martin Farach-Colton: Notung: dating gene duplications using gene family trees. 96-106
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  Xin Chen, Sam Kwong, Ming Li: A compression algorithm for DNA sequences and its applications in genome comparison. 107
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  Benny Chor, Michael D. Hendy, Barbara R. Holland, David Penny: Multiple maxima of likelihood in phylogenetic trees: an analytic approach. 108-117
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  Richard Desper, Martin Vingron: Tree fitting: an algebraic approach using profile distances. 119-126
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  Nir Friedman, Michal Linial, Iftach Nachman, Dana Pe'er: Using Bayesian networks to analyze expression data. 127-135
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  Walter Gilbert: Invited presentation: introns and modules in ancient conserved genes (abstract only). 136
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  Takashi Gojobori, T. Daniel Andrews, Takeshi Itoh: Evolutionary features of genomes as disclosed by comparative analysis of complete genome sequences (abstract only). 137
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  Michael T. Hallett, Jens Lagergren: New algorithms for the duplication-loss model. 138-146
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  Reece Hart, Ajay K. Royyuru, Gustavo Stolovitzky, Andrea Califano: Systematic and automated discovery of patterns in PROSITE families. 147-154
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  Steffen Heber, Jens Stoye, Jörg D. Hoheisel, Martin Vingron: Contig selection in physical mapping. 155-164
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  Steffen Hennig, Ralf Herwig, Matthew Clark, Pia Aanstad, A. Musa, John O'Brien, C. Bull, Uwe Radelof, Georgia Panopoulou, Albert J. Poustka, Hans Lehrach: A data-analysis pipeline for large-scale gene expression analysis. 165-173
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  Leroy E. Hood: Computing life and global technologies (abstract only). 174
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  Henrik Kaessmann, Ingo Ebersberger, Victor Wiebe, Rikard Erlandsson, Jim F. Wilson, Carsten Schwarz, Michaela Winkler, Svante Pääbo: DNA sequence variation among humans and apes (abstract only). 175
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  Minoru Kanehisa: Sequence comparison to graph comparison--a new generation of algorithms for network analysis of interacting molecules (abstract only). 176
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  Maricel Kann, Richard A. Goldstein: Optimizing for success: a new score function for distantly related protein sequence comparison. 177-182
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  John D. Kececioglu, Sanjay Shete, Jonathan Arnold: Reconstructing distances in physical maps of chromosomes with nonoverlapping probes. 183-192
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  Adam Liwo, Jaroslaw Pillardy, Cezary Czaplewski, Jooyoung Lee, Daniel R. Ripoll, Malgorzata Groth, Sylwia Rodziewicz-Motowidlo, Rajmund Kazmierkiewicz, Ryszard J. Wawak, Stanislaw Oldziej, Harold A. Scheraga: UNRES: a united-residue force field for energy-based prediction of protein structure - orgin and significance of multibody terms. 193-200
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  Rune B. Lyngsø, Christian N. S. Pedersen: Pseudoknots in RNA secondary structures. 201-209
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  Laurent Marsan, Marie-France Sagot: Extracting structured motifs using a suffix tree - algorithms and application to promoter consensus identification. 210-219
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  Yvonne C. Martin, Mark G. Bures: Molecular diversity: strategies and concerns (abstract only). 220
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  Yusuke Nakamura: Human genome analysis and medicine in the 21st century (abstract only). 221-222
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  Y. Zenmei Ohkubo, Gordon M. Crippen: Determining contact energy function for continuous state models of globular protein conformations. 223-230
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  Pavel A. Pevzner, Vlado Dancík, Chris L. Tang: Mutation-tolerant protein identification by mass-spectrometry. 231-236
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  Elon Portugaly, Michal Linial: Probabilities for having a new fold on the basis of a map of all protein sequences. 237-244
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  Franco P. Preparata, Eli Upfal: Sequencing-by-hybridization at the information-theory bound: an optimal algorithm. 245-253
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  David Sankoff, David Bryant, Mélanie Deneault, B. Franz Lang, Gertraud Burger: Early eukaryote evolution based on mitochondrial gene order breakpoints. 254-262
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  Donna K. Slonim, Pablo Tamayo, Jill P. Mesirov, Todd R. Golub, Eric S. Lander: Class prediction and discovery using gene expression data. 263-272
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  Jon M. Sorenson, Teresa Head-Gordon: Matching simulation and experiment (extended abstract): a new simplified model for simulating protein folding. 273-282
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  Sarah A. Teichmann, Cyrus Chothia, George M. Church, Jong Park: PDB_ISL: an intermediate sequence library for protein structure assignment. 283-289
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  Masaru Tomita, Kenta Hashimoto, Koichi Takahashi, Yuri Matsuzaki, Ryo Matsushima, Katsuyuki Yugi, Fumihiko Miyoshi, Hisako Nakano, Yusuke Saito, S. Shimizu, Yoichi Nakayama: The E-CELL project: towards integrative simulation of cellular processes. 290-298
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  Ying Xu, Dong Xu, Oakley H. Crawford, J. Ralph Einstein, Engin Serpersu: Protein structure determination using protein threading and sparse NMR data (extended abstract). 299-307
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  Golan Yona, Michael Levitt: A unified sequence-structure classification of protein sequences: combining sequence and structure in a map of the protein space. 308-317
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  Alexander Zien, Ralf Zimmer, Thomas Lengauer: A simple iterative approach to parameter optimization. 318-327