PACBB 2012: Salamanca, Spain
Miguel P. Rocha, Nicholas M. Luscombe, Florentino Fdez-Riverola, Juan M. Corchado Rodríguez (Eds.): 6th International Conference on Practical Applications of Computational Biology & Bioinformatics. Springer 2012 Advances in Intelligent and Soft Computing 154 ISBN 978-3-642-28838-8
Sandrine Mouysset, Ronan Guivarch, Joseph Noailles, Daniel Ruiz: Parallel Spectral Clustering for the Segmentation of cDNA Microarray Images. 1-9
André Valério Carreiro, Artur J. Ferreira, Mário A. T. Figueiredo, Sara C. Madeira: Prognostic Prediction Using Clinical Expression Time Series: Towards a Supervised Learning Approach Based on Meta-biclusters. 11-20
Filipe Cristóvão, Sara C. Madeira: Parallel e-CCC-Biclustering: Mining Approximate Temporal Patterns in Gene Expression Time Series Using Parallel Biclustering. 21-31
Carmen Maria Livi, Luc Paillard, Enrico Blanzieri, Yann Audic: Identification of Regulatory Binding Sites on mRNA Using in Vivo Derived Informations and SVMs. 33-41
Paulo Gaspar, Jaime Carbonell, José Luís Oliveira: Parameter Influence in Genetic Algorithm Optimization of Support Vector Machines. 43-51
Diego Calvo-Dmgz, Juan F. Gálvez, Daniel Glez-Peña, Florentino Fdez-Riverola: Biological Knowledge Integration in DNA Microarray Gene Expression Classification Based on Rough Set Theory. 53-61
Jesus Bisbal, Gerhard Engelbrecht, Alejandro F. Frangi: Quantitative Assessment of Estimation Approaches for Mining over Incomplete Data in Complex Biomedical Spaces: A Case Study on Cerebral Aneurysms. 63-71
Carlos Carvalhal, Sérgio Deusdado, Leonel Deusdado: ASAP: An Automated System for Scientific Literature Search in PubMed Using Web Agents. 73-78
Livia Campo, Vicente Vera, Alvaro Enrique Garcia, Juan Francisco de Paz, Juan M. Corchado: Case-Based Reasoning to Classify Endodontic Retreatments. 79-86
R. Romero, Eva Lorenzo Iglesias, Lourdes Borrajo: A Comparative Analysis of Balancing Techniques and Attribute Reduction Algorithms. 87-94
José Ignacio Requeno, Roberto Blanco, Gregorio de Miguel Casado, José Manuel Colom: Sliced Model Checking for Phylogenetic Analysis. 95-103
Jorge Álvarez-Jarreta, Elvira Mayordomo, Eduardo Ruiz-Pesini: PHYSER: An Algorithm to Detect Sequencing Errors from Phylogenetic Information. 105-112
Anália Lourenço, Andreia Ferreira, Maria Olívia Pereira, Nuno F. Azevedo: A Systematic Approach to the Interrogation and Sharing of Standardised Biofilm Signatures. 113-120
Juan Francisco de Paz, Carolina Zato, María Abáigar, Ana Rodríguez-Vicente, Rocío Benito, Jesús M. Hernández: Visual Analysis Tool in Comparative Genomics. 121-127
Antonio Martinez-Sanchez, Inmaculada García, José-Jesús Fernández: Procedure for Detection of Membranes in Three-Dimensional Subcellular Density Maps. 137-145
Ángel Monteagudo, José Santos Reyes: A Cellular Automaton Model for Tumor Growth Simulation. 147-155
Carlos A. Ruiz-Villa, Andrés P. Castaño, Andrés Castillo, Elvio Heidenreich: Ectopic Foci Study on the Crest Terminalis in 3D Computer Model of Human Atrial. 157-164
Pedro Lopes, Rafael Mendonça, Hugo Rocha, Jorge Oliveira, Laura Vilarinho, Rosário Santos, José Luís Oliveira: A Rare Disease Patient Manager. 173-180
Ana Margarida Sousa, Anália Lourenço, Maria Olívia Pereira: MorphoCol: A Powerful Tool for the Clinical Profiling of Pathogenic Bacteria. 181-188
Hugo López-Fernández, Daniel Glez-Peña, Miguel Reboiro-Jato, Gonzalo Gómez-López, David G. Pisano, Florentino Fdez-Riverola: Applying AIBench Framework to Develop Rich User Interfaces in NGS Studies. 189-196
Nuria Medina-Medina, A. Broka, S. Lacey, H. Lin, E. S. Klings, C. T. Baldwin, M. H. Steinberg, Paola Sebastiani: Comparing Bowtie and BWA to Align Short Reads from a RNA-Seq Experiment. 197-207
Roberto González, Carolina Zato, Rocío Benito, María Hernández, Jesús M. Hernández, Juan Francisco de Paz: SAMasGC: Sequencing Analysis with a Multiagent System and Grid Computing. 209-216
Diogo Pratas, Armando J. Pinho, Sara P. Garcia: Exon: A Web-Based Software Toolkit for DNA Sequence Analysis. 217-224
David Reboiro-Jato, Miguel Reboiro-Jato, Florentino Fdez-Riverola, Nuno A. Fonseca, Jorge Vieira: On the Development of a Pipeline for the Automatic Detection of Positively Selected Sites. 225-229
José Ignacio Requeno, José Manuel Colom: Compact Representation of Biological Sequences Using Set Decision Diagrams. 231-239
Sara Correia, Miguel Rocha: Computational Tools for Strain Optimization by Adding Reactions. 241-250
Emanuel Gonçalves, Isabel Rocha, Miguel Rocha: Computational Tools for Strain Optimization by Tuning the Optimal Level of Gene Expression. 251-258
Pedro T. Monteiro, Claudine Chaouiya: Efficient Verification for Logical Models of Regulatory Networks. 259-267
Christoph Gernert, Evelin Berger, Frank Klawonn, Lothar Jänsch: Tackling Misleading Peptide Regulation Fold Changes in Quantitative Proteomics. 269-276
Luis Fernando Castillo, Oscar Gómez-Ramírez, Narmer Galeano-Vanegas, Luis Bertel-Paternina, Gustavo A. Isaza, Álvaro Gaitán-Bustamante: Coffee Transcriptome Visualization Based on Functional Relationships among Gene Annotations. 277-283



