PACBB 2011: Salamanca, Spain
Miguel P. Rocha, Juan M. Corchado Rodríguez, Florentino Fdez-Riverola, Alfonso Valencia (Eds.): 5th International Conference on Practical Applications of Computational Biology & Bioinformatics, PACBB 2011, April 6-8, 2011, Salamanca, Spain. Springer 2011 Advances in Intelligent and Soft Computing 93 ISBN 978-3-642-19913-4
Sergio Torres-Sánchez, Rosana Montes-Soldado, Nuria Medina-Medina, Andrés R. Masegosa, María del Mar Abad-Grau: Riskoweb: Web-Based Genetic Profiling to Complex Disease Using Genome-Wide SNP Markers. 1-8
Francisco José Esteban, David Díaz, Pilar Hernández, Juan Antonio Caballero, Gabriel Dorado, Sergio Gálvez: MC64: A Web Platform to Test Bioinformatics Algorithms in a Many-Core Architecture. 9-16
Eliana Sousa, Tiago Jesus, Lina Neves, Mónica Isabel Teixeira Costa, Fernando Reinaldo Ribeiro, José Carlos Metrôlho, Ricardo Cruz-Correia: Integrating Medical Patient Data with Family Trees to Improve the Quality of Information. 17-22
Lionel Morgado, Carlos Pereira, Paula Veríssimo, António Dourado: Peptidase Detection and Classification Using Enhanced Kernel Methods with Feature Selection. 23-30
Andreia Teixeira-Castro, Nuno Dias, Pedro Miguel Rodrigues, João Filipe Oliveira, Nuno F. Rodrigues, Patrícia Maciel, João L. Vilaça: An Image Processing Application for Quantification of Protein Aggregates in Caenorhabditis Elegans. 31-38
Jorge Álvarez, Roberto Blanco, Elvira Mayordomo: Workflows with Model Selection: A Multilocus Approach to Phylogenetic Analysis. 39-47
Ricardo Santos Aires, João A. Carriço, Alexandre P. Francisco, Sara C. Madeira: Baiacu: A Tool for the Visual Analysis of the Saccharomyces Cerevisiae Regulatory Network. 49-56
Ginés D. Guerrero, Horacio Emilio Pérez Sánchez, Wolfgang Wenzel, José M. Cecilia, José M. García: Effective Parallelization of Non-bonded Interactions Kernel for Virtual Screening on GPUs. 63-69
David N. Olivieri, Iván Gómez-Conde, José Faro: Tracking B Cells from Two-Photon Microscopy Images Using Sequential Monte Carlo. 71-78
Tânia Teixeira, Sérgio Deusdado: Experiments on Computer Assisted Optimization of the EscherichiaColi Fermentation Process Using Optferm. 79-82
Daniel Glez-Peña, Miguel Reboiro-Jato, Florentino Fdez-Riverola, David G. Pisano, Gonzalo Gómez-López: An Intuitive Workflow to Retrieve Somatic Mutations in Next Generation Sequencing Studies. 83-86
Daniel Glez-Peña, Osvaldo Graña, Florentino Fdez-Riverola, David G. Pisano: Building a GATK-Based Tool for Methylation Analysis in Next-Generation Bisulfite Sequencing Experiments. 87-91
M. Márquez-Cid, G. Comesaña, R. Milne, G. Andrés, Núria Malats, David G. Pisano: EPIQuest: A Multiuser and Multiproject Web Tool to Build Online Forms for Biomedical Studies. 93-98
Miguel Reboiro-Jato, Daniel Glez-Peña, José Ramón Méndez Reboredo, Hugo Miguel Santos, Ricardo Jorge Carreira, José L. Capelo, Florentino Fdez-Riverola: Building Proteomics Applications with the AIBench Application Framework. 99-107
Marina Beltrán-Blanco, Javier Molina-Vilaplana, José Luis Muñoz-Lozano, Juan López Coronado: Neurohand Solving the Inverse Cinematic of an Anthropomorphic Arm. 109-115
Angélica González, Marco A. Ameller F.: An Enhancement of the Usage of the Poincare Index for the Detection and Classification of Characteristic Points in Dactylograms. 117-124
Nabila Kazmi, M. Alamgir Hossain, Roger M. Phillips: Modelling of Tirapazamine Effects on Solid Tumour Morphology. 125-132
S. Algoul, Mohammad S. Alam, Kazi Sakib, M. Alamgir Hossain, M. A. A. Majumder: MOGA-Based Multi-drug Optimisation for Cancer Chemotherapy. 133-140
Saleh Enbiya, M. Alamgir Hossain, Fatima Mahieddine: Multi-drug Infusion Control Using Model Reference Adaptive Algorithm. 141-148
Fernando José Mateus da Silva, Juan Manuel Sánchez-Pérez, Juan Antonio Gómez Pulido, Miguel A. Vega-Rodríguez: A Parallel Niched Pareto Evolutionary Algorithm for Multiple Sequence Alignment. 157-165
José Ignacio Requeno, Roberto Blanco, Gregorio de Miguel Casado, José Manuel Colom: Phylogenetic Analysis Using an SMV Tool. 167-174
Tarek El Falah, Thierry Lecroq, Mourad Elloumi: An Efficient Motif Search Algorithm Based on a Minimal Forbidden Patterns Approach. 175-182
Francisco M. Ortuño Guzman, Ignacio Rojas, Héctor Pomares, José M. Urquiza, J. P. Florido: Emerging Methodologies in Multiple Sequence Alignment Using High Throughput Data. 183-190
Heri Ramampiaro, Aleksander Grande: DNA Sequence Search Using Content-Based Image Search Approach. 191-199
Josep Bau, Marta Cullell, Jordi Solé-Casals: Integrative Analysis of the Regulatory Region of the FGFR3 Oncogene. 201-204
Carlos A. C. Bastos, Vera Afreixo, Armando J. Pinho, Sara P. Garcia, João M. O. S. Rodrigues, Paulo Jorge S. G. Ferreira: Distances between Dinucleotides in the Human Genome. 205-211
Diogo Pratas, Armando J. Pinho: Compressing the Human Genome Using Exclusively Markov Models. 213-220
Víctor Andrés Vera Ruiz, Liliana López Kleine: Highlighting Differential Gene Expression between Two Condition Microarrays through Multidimensional Scaling Comparison of LesihmaniaInfantum Genomic Data Similarity Matrices. 221-228
André Valério Carreiro, Orlando Anunciação, João A. Carriço, Sara C. Madeira: Biclustering-Based Classification of Clinical Expression Time Series: A Case Study in Patients with Multiple Sclerosis. 229-239
Antonio Carvajal-Rodríguez, Jacobo de Uña-Álvarez: A Simulation Study on the Impact of Strong Dependence in High-Dimensional Multiple-Testing I: The Case without Effects. 241-246
Rita M. T. Ascenso: Bioinformatics as a Tool to Help Characterise Perkinsus Olseni Up-Regulated Genes in Response to Its Host. 247-253
Raul Malutan, Pedro Gómez Vilda, Ioana Berindan Neagoe, Monica Borda: Hybridization Dynamics Compensation in Microarray Experiments. 255-261
Natalia Novoselova, Frank Klawonn, Thorsten Johl, Tobias Reinl, Lothar Jänsch: Identification of Peptides with Deviating Regulation Factors Using a Robust Clustering Scheme. 263-270
Gualberto Asencio Cortés, Jesús S. Aguilar-Ruiz, Alfonso E. Márquez Chamorro: Prediction of Protein Distance Maps by Assembling Fragments According to Physicochemical Similarities. 271-277
Alfonso E. Márquez Chamorro, Federico Divina, Jesús S. Aguilar-Ruiz, Gualberto Asencio Cortés: Residue-Residue Contact Prediction Based on Evolutionary Computation. 279-283
Md. Saiful Islam, Alaol Kabir, Kazi Sakib, M. Alamgir Hossain: NcPred for Accurate Nuclear Protein Prediction Using n-mer Statistics with Various Classification Algorithms. 285-292
Beatriz Luna, Claudine Chaouiya: Relating Formalisms for the Qualitative Modelling of Regulatory Networks. 293-302
Anália Lourenço, Sónia Carneiro, José P. Pinto, Miguel Rocha, Eugénio C. Ferreira, Isabel Rocha: Interpreting the Regulatory Interplay in E. coli Metabolic Pathways. 303-312
Sónia Carneiro, Eugénio C. Ferreira, Isabel Rocha: A Systematic Modeling Approach to Elucidate the Triggering of the Stringent Response in Recombinant E. coli Systems. 313-320
Diana Hermith, Carlos Olarte, Camilo Rueda, Frank D. Valencia: Modeling Cellular Signaling Systems: An Abstraction-Refinement Approach. 321-328
Paulo Vilaça, Paulo Maia, Miguel Rocha: A Study on the Robustness of Strain Optimization Algorithms. 329-336
Rosalia Laza, Reyes Pavón, Miguel Reboiro-Jato, Florentino Fdez-Riverola: Assessing the Suitability of MeSH Ontology for Classifying Medline Documents. 337-344
Reyes Pavón, Rosalia Laza, Miguel Reboiro-Jato, Florentino Fdez-Riverola: Assessing the Impact of Class-Imbalanced Data for Classifying Relevant/Irrelevant Medline Documents. 345-353
Rui Camacho, Max Pereira, Vítor Santos Costa, Nuno A. Fonseca, Carlos J. V. Simões, Rui M. M. Brito: Assessing the Effect of 2D Fingerprint Filtering on ILP-Based Structure-Activity Relationships Toxicity Studies in Drug Design. 355-363
R. Romero, Eva Lorenzo Iglesias, Lourdes Borrajo, Carmen M. Redondo Marey: Using Dictionaries for Biomedical Text Classification. 365-372
José M. Urquiza, Ignacio Rojas, Héctor Pomares, Luis Javier Herrera, J. P. Florido, Francisco M. Ortuño Guzman: Using Machine Learning Techniques and Genomic/Proteomic Information from Known Databases for PPI Prediction. 373-380
Sérgio Matos, José Luís Oliveira: Prioritizing Literature Search Results Using a Training Set of Classified Documents. 381-388
José Javier Moreno-Ortega, Nuria Medina-Medina, Rosana Montes-Soldado, María del Mar Abad-Grau: Improving Reproducibility on Tree Based Multimarker Methods: TreeDTh. 389-396



