PACBB 2011: Salamanca, Spain

• Sergio Torres-Sánchez, Rosana Montes-Soldado, Nuria Medina-Medina, Andrés R. Masegosa, María del Mar Abad-Grau:
  Riskoweb: Web-Based Genetic Profiling to Complex Disease Using Genome-Wide SNP Markers. 1-8
  
• Francisco José Esteban, David Díaz, Pilar Hernández, Juan Antonio Caballero, Gabriel Dorado, Sergio Gálvez:
  MC64: A Web Platform to Test Bioinformatics Algorithms in a Many-Core Architecture. 9-16
  
• Eliana Sousa, Tiago Jesus, Lina Neves, Mónica Isabel Teixeira Costa, Fernando Reinaldo Ribeiro, José Carlos Metrôlho, Ricardo Cruz-Correia:
  Integrating Medical Patient Data with Family Trees to Improve the Quality of Information. 17-22
  
• Lionel Morgado, Carlos Pereira, Paula Veríssimo, António Dourado:
  Peptidase Detection and Classification Using Enhanced Kernel Methods with Feature Selection. 23-30
  
• Andreia Teixeira-Castro, Nuno Dias, Pedro Rodrigues, João Filipe Oliveira, Nuno F. Rodrigues, Patrícia Maciel, João L. Vilaça:
  An Image Processing Application for Quantification of Protein Aggregates in Caenorhabditis Elegans. 31-38
  
• Jorge Álvarez, Roberto Blanco, Elvira Mayordomo:
  Workflows with Model Selection: A Multilocus Approach to Phylogenetic Analysis. 39-47
  
• Ricardo Santos Aires, João A. Carriço, Alexandre P. Francisco, Sara C. Madeira:
  Baiacu: A Tool for the Visual Analysis of the Saccharomyces Cerevisiae Regulatory Network. 49-56
  
• Márcio S. Carocho, Sérgio A. D. Deusdado:
  BBMS⁺⁺ - Basic Bioinformatics Meta-searcher. 57-62
  
• Ginés D. Guerrero, Horacio Emilio Pérez Sánchez, Wolfgang Wenzel, José M. Cecilia, José M. García:
  Effective Parallelization of Non-bonded Interactions Kernel for Virtual Screening on GPUs. 63-69
  
• David N. Olivieri, Iván Gómez-Conde, José Faro:
  Tracking B Cells from Two-Photon Microscopy Images Using Sequential Monte Carlo. 71-78
  
• Tânia Teixeira, Sérgio Deusdado:
  Experiments on Computer Assisted Optimization of the EscherichiaColi Fermentation Process Using Optferm. 79-82
  
• Daniel Glez-Peña, Miguel Reboiro-Jato, Florentino Fdez-Riverola, David G. Pisano, Gonzalo Gómez-López:
  An Intuitive Workflow to Retrieve Somatic Mutations in Next Generation Sequencing Studies. 83-86
  
• Daniel Glez-Peña, Osvaldo Graña, Florentino Fdez-Riverola, David G. Pisano:
  Building a GATK-Based Tool for Methylation Analysis in Next-Generation Bisulfite Sequencing Experiments. 87-91
  
• M. Márquez-Cid, G. Comesaña, R. Milne, G. Andrés, N. Malats, D. Pisano:
  EPIQuest: A Multiuser and Multiproject Web Tool to Build Online Forms for Biomedical Studies. 93-98
  
• Miguel Reboiro-Jato, Daniel Glez-Peña, José Ramón Méndez Reboredo, Hugo Miguel Santos, Ricardo Jorge Carreira, José L. Capelo, Florentino Fdez-Riverola:
  Building Proteomics Applications with the AIBench Application Framework. 99-107
  
• Marina Beltrán-Blanco, Javier Molina-Vilaplana, José Luis Muñoz-Lozano, Juan López Coronado:
  Neurohand Solving the Inverse Cinematic of an Anthropomorphic Arm. 109-115
  
• Angélica González, Marco A. Ameller F.:
  An Enhancement of the Usage of the Poincare Index for the Detection and Classification of Characteristic Points in Dactylograms. 117-124
  
• N. Kazmi, M. Alamgir Hossain, R. M. Phillips:
  Modelling of Tirapazamine Effects on Solid Tumour Morphology. 125-132
  
• S. Algoul, Mohammad S. Alam, Kazi Sakib, M. Alamgir Hossain, M. A. A. Majumder:
  MOGA-Based Multi-drug Optimisation for Cancer Chemotherapy. 133-140
  
• Saleh Enbiya, M. Alamgir Hossain, Fatima Mahieddine:
  Multi-drug Infusion Control Using Model Reference Adaptive Algorithm. 141-148
  
• John Healy, Desmond Chambers:
  Fast and Accurate Genome Anchoring Using Fuzzy Hash Maps. 149-156
  
• Fernando José Mateus da Silva, Juan Manuel Sánchez-Pérez, Juan Antonio Gómez Pulido, Miguel A. Vega-Rodríguez:
  A Parallel Niched Pareto Evolutionary Algorithm for Multiple Sequence Alignment. 157-165
  
• José Ignacio Requeno, Roberto Blanco, Gregorio de Miguel Casado, José Manuel Colom:
  Phylogenetic Analysis Using an SMV Tool. 167-174
  
• Tarek El Falah, Thierry Lecroq, Mourad Elloumi:
  An Efficient Motif Search Algorithm Based on a Minimal Forbidden Patterns Approach. 175-182
  
• Francisco M. Ortuño Guzman, Ignacio Rojas, Héctor Pomares, José M. Urquiza, J. P. Florido:
  Emerging Methodologies in Multiple Sequence Alignment Using High Throughput Data. 183-190
  
• Heri Ramampiaro, Aleksander Grande:
  DNA Sequence Search Using Content-Based Image Search Approach. 191-199
  
• Josep Bau, Marta Cullell, Jordi Solé-Casals:
  Integrative Analysis of the Regulatory Region of the FGFR3 Oncogene. 201-204
  
• Carlos A. C. Bastos, Vera Afreixo, Armando J. Pinho, Sara P. Garcia, João M. O. S. Rodrigues, Paulo Jorge S. G. Ferreira:
  Distances between Dinucleotides in the Human Genome. 205-211
  
• Diogo Pratas, Armando J. Pinho:
  Compressing the Human Genome Using Exclusively Markov Models. 213-220
  
• Víctor Andrés Vera Ruiz, Liliana López Kleine:
  Highlighting Differential Gene Expression between Two Condition Microarrays through Multidimensional Scaling Comparison of LesihmaniaInfantum Genomic Data Similarity Matrices. 221-228
  
• André Valério Carreiro, Orlando Anunciação, João A. Carriço, Sara C. Madeira:
  Biclustering-Based Classification of Clinical Expression Time Series: A Case Study in Patients with Multiple Sclerosis. 229-239
  
• Antonio Carvajal-Rodríguez, Jacobo de Uña-Álvarez:
  A Simulation Study on the Impact of Strong Dependence in High-Dimensional Multiple-Testing I: The Case without Effects. 241-246
  
• Rita M. T. Ascenso:
  Bioinformatics as a Tool to Help Characterise Perkinsus Olseni Up-Regulated Genes in Response to Its Host. 247-253
  
• Raul Malutan, Pedro Gómez Vilda, Ioana Berindan Neagoe, Monica Borda:
  Hybridization Dynamics Compensation in Microarray Experiments. 255-261
  
• Natalia Novoselova, Frank Klawonn, Thorsten Johl, Tobias Reinl, Lothar Jänsch:
  Identification of Peptides with Deviating Regulation Factors Using a Robust Clustering Scheme. 263-270
  
• Gualberto Asencio Cortés, Jesús S. Aguilar-Ruiz, Alfonso E. Márquez Chamorro:
  Prediction of Protein Distance Maps by Assembling Fragments According to Physicochemical Similarities. 271-277
  
• Alfonso E. Márquez Chamorro, Federico Divina, Jesús S. Aguilar-Ruiz, Gualberto Asencio Cortés:
  Residue-Residue Contact Prediction Based on Evolutionary Computation. 279-283
  
• Md. Saiful Islam, Alaol Kabir, Kazi Sakib, M. Alamgir Hossain:
  NcPred for Accurate Nuclear Protein Prediction Using n-mer Statistics with Various Classification Algorithms. 285-292
  
• Beatriz Luna, Claudine Chaouiya:
  Relating Formalisms for the Qualitative Modelling of Regulatory Networks. 293-302
  
• Anália Lourenço, Sónia Carneiro, José P. Pinto, Miguel Rocha, Eugénio C. Ferreira, Isabel Rocha:
  Interpreting the Regulatory Interplay in E. coli Metabolic Pathways. 303-312
  
• Sónia Carneiro, Eugénio C. Ferreira, Isabel Rocha:
  A Systematic Modeling Approach to Elucidate the Triggering of the Stringent Response in Recombinant E. coli Systems. 313-320
  
• Diana Hermith, Carlos Olarte, Camilo Rueda, Frank D. Valencia:
  Modeling Cellular Signaling Systems: An Abstraction-Refinement Approach. 321-328
  
• Paulo Vilaça, Paulo Maia, Miguel Rocha:
  A Study on the Robustness of Strain Optimization Algorithms. 329-336
  
• Rosalia Laza, Reyes Pavón, Miguel Reboiro-Jato, Florentino Fdez-Riverola:
  Assessing the Suitability of MeSH Ontology for Classifying Medline Documents. 337-344
  
• Reyes Pavón, Rosalia Laza, Miguel Reboiro-Jato, Florentino Fdez-Riverola:
  Assessing the Impact of Class-Imbalanced Data for Classifying Relevant/Irrelevant Medline Documents. 345-353
  
• Rui Camacho, Max Pereira, Vítor Santos Costa, Nuno A. Fonseca, Carlos J. V. Simões, Rui M. M. Brito:
  Assessing the Effect of 2D Fingerprint Filtering on ILP-Based Structure-Activity Relationships Toxicity Studies in Drug Design. 355-363
  
• R. Romero, Eva Lorenzo Iglesias, Lourdes Borrajo, Carmen M. Redondo Marey:
  Using Dictionaries for Biomedical Text Classification. 365-372
  
• José M. Urquiza, Ignacio Rojas, Héctor Pomares, Luis Javier Herrera, J. P. Florido, F. Ortuño:
  Using Machine Learning Techniques and Genomic/Proteomic Information from Known Databases for PPI Prediction. 373-380
  
• Sérgio Matos, José Luís Oliveira:
  Prioritizing Literature Search Results Using a Training Set of Classified Documents. 381-388
  
• José Javier Moreno-Ortega, Nuria Medina-Medina, Rosana Montes-Soldado, María del Mar Abad-Grau:
  Improving Reproducibility on Tree Based Multimarker Methods: TreeDTh. 389-396
  

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