Medical & Imaging Informatics

• 
  Roderick Y. Son, Frank Meng, Andrew A. Chen, Ricky K. Taira, Hooshang Kangarloo: Towards Semantics-Based Intra-Document Coreference Resolution. 3-16
• 
  Frank Meng, Andrew A. Chen, Roderick Y. Son, Ricky K. Taira, Bernard M. Churchill, Hooshang Kangarloo: Information Extraction Using Semantic Patterns for Populating Clinical Data Models. 10-16
• 
  Andrew A. Chen, Frank Meng, Roderick Y. Son, Ricky K. Taira, Bernard M. Churchill, Hooshang Kangarloo: Framework for the Automated Validation of Nomograms for the Prediction of Cancer Outcomes. 17-22
• 
  Louis E. Selva, Suzie El-Saden, Jim Sayre, Hooshang Kangarloo, Usha Sinha: Automated Decision Support for Brain MRI Protocol Selection. 23-30

Fuzzy Logic in Medicine

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  Rudolf Seising: Fuzzy Sets in Medicine - Historical Remarks. 31-37
• 
  Ch. Schuh, M. Hiesmayr, Klaus-Peter Adlassnig: A Knowledge Acquisition Tool for Weaning from Artificial Ventilation in Intensive Care Units. 38-46

Medical Diagnosis & Decision Making

• 
  V. E. Orel, Dmitry Klyushin, A. V. Romanov, Yuriy Petunin, Roman Andrushkiw: Diagnosis of Colon Cancer and Cancer of the Esophagus Based on Blood Mechanoemisison. 47-51
• 
  Joshua R. New, Erion Hasanbelliu, Mario Aguilar: Med-LIFE: A Diagnostic Aid for Medical Imagery. 52-57
• 
  Yung-fu Chen, Jan-Ray Liao, Su-Jiau Chen: The Application of Gradient Vector Active Contour Model in the Detection of Cervical Cells Obtained from Pap Smears. 58-63
• 
  Jun Zheng, Emma Regentova: Microcalcification Detection Using Independent Component Analysis. 64-68
• 
  Kostyantyn Polinkevych, Galyna Onopchuk: Mathematical Models of the Respiratory System and Practical Problems of Medicine. 69-74
• 
  Steve P. Chadwick: Viewing and Evaluating Accuracy Differences between Diagnostic Classes. 75-81
• 
  Xujing Wang, Soumitra Ghosh: Mathematical Modeling Reveals that the Recent Developmental Secular Trend May Contribute to the Epidemiological Changes of Type 1 Diabetes. 82-97

Data & Information Management

• 
  George Chin Jr., Carina Lansing: The Biological Sciences Collaboratory. 91-97
• 
  Madhusudan, Illango Vadivelu, Lothar Krause, Yuhong Ning, Stephen Lyon, Peter Morrison, Lonnie Sorrells, Ron Taussig, Shankar Subramaniam: The Laboratory Information Management System (LIMS) for Handling the Heterogeneous Data from High Throughput Experiments in the Post-Genome Sequencing Era. 98-104
• 
  Eric G. Stephan, George Chin Jr., Abigail L. Corrigan, Kyle R. Klicker, Heidi J. Sofia: Synchronized Biological Knowledge and Data Management: A Hybrid Approach. 105-112

Signal Processing

• 
  Alejandro Heredia-Langner, William R. Cannon, Kenneth D. Jarman, Kristin H. Jarman: De Novo Analysis of Tandem Mass Spectrometry Data as a Non-Deterministic Optimization Problem. 113-117
• 
  Jack K. Horner: A Neighbor-Joining Method for Identifying a Stage I Ovarian Cancer Signature in the Mass-Spectrum of Serum Proteins. 118-123
• 
  Hsuan-Hung Lin, Yung-fu Chen, Tainsong Chen, You-Yun Lee: Decomposition of Saccadic Pulse and Step Components by Independent Component Analysis. 124-128
• 
  Aram Arakelyan, Narine Pirumyan: Multifocal Electroretinogram 3D Wave Representation and Analyzing. 129-134
• 
  Sunyoung Cho, Insop Shim, Jong Woo Kim, Eui Whan Hwang, Hyun Taek Kim: Development of Alzheimer's Disease Detection and Analysis System Using Brain Signals of Alzheimer Model Animals. 135-138
• 
  Jian-Guo Bau, Wei-Kung Wang, Yun-Ying Lin Wang: Quantitative Analysis of the Electrode Polarization and pH Measurement. 139-145
• 
  Jack K. Horner: A Neural Network Method for Identifying the Signature of Prostate Cancer in Serum Mass Spectra. 146-150
• 
  Kevin K. Anderson, Matthew E. Monroe, Don Simone Daly: Estimating Probabilities of Peptide Assignments to LC-FTICR-MS Observations. 151-156
• 
  Lu-Yong Wang, An-Suei Yang: Co-Variation Analysis of Helix Caps and Applications in Classification. 157-163
• 
  Marie A. Roch, Richard R. Hurtig, Jing Liu, Tong Huang: Towards a Cohort-Selective Frequency-Compression Hearing Aid. 164-172

Image Processing

• 
  Hongmei Zhu, Yunyan Zhang, Xingchang Wei, Luanne M. Metz, A. G. Law, J. Ross Mitchell: MR Multi-Spectral Texture Analysis Using Space-Frequency Information. 173-179
• 
  A. Asfour, K. Raoof, M. Sicner, J. M. Fournier: A New Software (Sequencer) for a Dedicated DSP-Based MRI System. 180-186
• 
  A. Asfour, P. Maliverney, J. M. Fournier, K. Raoof: Design and Simulation of a RF Coil for a Dedicated Low-Field MRI System. 187-190
• 
  S. Hyder Ali, R. Sukenesh, R. Avinsha: Automated Segmentation in computer Tomography Imaging. 191-196
• 
  Saeid Belkasim, Jian Gu, Gordana Derado, Eric Gilbert, Heather O'Connell: Multi Resolution Image Segmentation for Quantifying Spatial Heterogeneity in Mixed Population Biofilms. 197-203
• 
  Matthew He, Bai-Chuan Jiang, Yuliya Poberzhnyak: Using an Optimization Method to Determine the Parameters of the Accommodative System of the Eye. 204-208
• 
  Jin-Guey Lee, Fong-Lin Jang, Ming-Shi Wang: The Application of Infrared Imaging to Psychological Status Assessment - A Preliminary Study. 209-215
• 
  Robert A. Brown, Hongmei Zhu, J. Ross Mitchell, A. G. Law: 3D Progressive Imaging with Feature Selection. 216-222

Bioinformatics I

• 
  Rajaram Gana, Sarma S. R. Dittakavi, Rajalakshmi Srinivasan, Sona Vasudevan: Representing Sequences of Biological Macromolecules Using Prime Numbers. 223-224
• 
  H. Budak, R. C. Shearman, I. Dweikat: Cloning and Characterization of Resistance Gene-Like Sequences in Warm Season Turfgrass Species. 225-230
• 
  Geraint Thomas, Richard B. Sessions, Martin J. Parker: Effective Sampling of Protein Conformation Space: Identification of Independent Folding Units. 231-235
• 
  Kei-Hoi Cheung, Deyun Pan, Andrew K. Smith, Michael R. Seringhaus, Shawn M. Douglas, Mark Gerstein: A XML-Based Approach to Integrating Heterogeneous Yeast Genome Data. 236-242
• 
  Hua-Sheng Chiu, Han-Yu Chuang, Huai-Kuang Tsai, Tao-Wei Huang, Cheng-Yan Kao: Discovering Statistically Significant Clusters by Using Iterative Genetic Algorithms in Gene Expression Data. 243-249
• 
  Shouji Tatsumoto, Kenji Satou, Akihiko Konagaya: Prediction of Protein Secondary Structure from PDB Structure Information Based on Sequence Segments Homology Searching. 250-255
• 
  Jitender S. Deogun, Jingyi Yang, Fangrui Ma: Applications of EMAGEN on Comparing Multiple Prokaryotic Genomes. 256-262
• 
  Kajia Cao, Qiuming Zhu, Javeed Iqbal, John W. C. Chan: On the Alleviation of Side Effect of Outliers to Fisher's Discriminate Criterion in Micro-Array Data Analysis. 263-269
• 
  Homayoun Valafar, Kristen L. Mayer, Peter D. LeBlond, Catherine Bougault, James H. Prestegard: Residual Dipolar Couplings in High Throughput Backbone Solution Structure Determination of Proteins. 270
• 
  Wen-Ling Chan, Yen-Ping Chu, Yung-fu Chen, Chwei-Shyong Tsai, Jan-Gowth Chang: Identification of Mouse mslp2 from EST Databases by Repeated Searching, Comparison, and Assembling. 271-275
• 
  Catherine Putonti, Yuriy Fofanov: Analysis of Promoter Regions for Essential Genes of Bacillus subtilis for Using PIDA. 276-282
• 
  Chang Wang, Stephen D. Scott, Qingping Tao, Dmitri E. Fomenko, Vadim N. Gladyshev: New Techniques for Generation and Analysis of Evolutionary Trees. 283-292

Bioinformatics II

• 
  Stefan Engelen, Fariza Tahi: An Open Problem in RNA Secondary Structure Prediction by the Comparative Approach. 293-299
• 
  Gabriela Hristescu, Marc Kirschner, Jonathan Ploski, Aurelian Radu: The Human Genome Contains Numerous Clusters of Adjacent Co-Regulated Genes. 300-306
• 
  Susan Havre, Mudita Singhal, Banu Gopalan, Deborah A. Payne, Kyle R. Klicker, Gary Kiebel, Kenneth J. Auberry, Eric G. Stephan, Bobbie-Jo M. Webb-Robertson, Deborah K. Gracio: Integrating Evolving Tools for Proteomics Research. 307-313
• 
  Chia-Wen Chang, Mao-Yen Chen, Wen-Chang Chang, Cheng-Yan Kao: Exploring of Radiation Resistance from Bacterium Deinococcus radiodurans R1 by Amino Acid Compositions of Proteins: View from Comparative Whole Protein Sequences. 314-321
• 
  Linyong Mao, Haluk Resat: Genome Scale Identification of Regulons. 322-328
• 
  Lishan Li, Sami Khuri: A Comparison of DNA Fragment Assembly Algorithms. 329-335
• 
  Sergey Bereg: Reconstruction of gt-Networks from Gene Trees. 336-340
• 
  Thomas J. Wheeler: A System Biology Informatics Systems Integration Framework. 341-344
• 
  Bobbie-Jo M. Webb-Robertson, Susan L. Havre: Effective Dimension Reduction Using Sequential Projection Pursuit on Gene Expression Data for Cancer Classification. 345-351
• 
  Ying-Zhe Hsu, Yuh-Jyh Hu: A Combinatorial Approach to Reconstructing Transcriptional Regulatory Networks. 352-358
• 
  Hsuan-Chao Chiu, Yuh-Jyh Hu: A Site-Based Method for Prediction of Protein Orthologous Relations. 359-362
• 
  Sergei Chumakov, Catherine Putonti, B. Montgomery Pettitt, George E. Fox, Richard C. Willson, Yuriy Fofanov: Using Statistical Properties of Short Subsequences in Microbial Identification. 363-370

Applications

• 
  Richard Samade, Boris Kogan: The Properties of the Cardiac Cell Mathematical Model with the Markovian Representation of Potassium Channel Gating Processes under High Pacing Rate (Computer Simulation Study). 371-377
• 
  Ning Suo, Khaled Rasheed, Walter D. Potter, Dennis N. Aron: Machine Learning Techniques for the Evaluation of External Skeletal Fixation Structures. 378-384
• 
  N. V. Boroday, Dmitry Klyushin, Yuriy Petunin, O. Lyakhovka, F. Miropolska, Roman Andrushkiw: Retrospective Cohort Investigation of Risk Factors in Breast Cancer. 385-390
• 
  Chi-Hung Tsai, Huai-Kuang Tsai, Shih-Chieh Chen, Cheng-Yan Kao: Disulfide Connectivity Prediction Using Support Vector Machine and Novel Features. 391-395
• 
  Mark T. Jones, Eloise Coupey: An Agent-Based Simulation Prototype for Evaluating Health Behavior Interventions. 396-401
• 
  Hui-Yi Chang, Chi-Wei Peng, Jia-Jin Chen, Chen-Li Cheng, William C. de Groat: Analysis of the Pelvic-to-External Urethral Sphincter Reflex in Intact and Acute Spinalized Rats. 402
• 
  Jon Inouye: Quantum Simulation Using Membrane Computing. 403-409
• 
  Jack K. Horner: A Power-Law Model of Dengue Haemorrhagic Fever Epidemics in Thailand. 410-415
• 
  Rini Pura Kirana, Akihiko Sugiura: Recognition of Child's Expressions and Reactions Using Multimedia Communication Network for Examining Child's Development. 416-421
• 
  Kyle R. Klicker, Mudita Singhal, Eric G. Stephan, Lynn Trease, Deborah K. Gracio: Computational Cell Environment: A Problem Solving Environment for Integrating Diverse Biological Data. 422-428
• 
  German Nudelman, Yoram Louzoun: Antigen Epitope Density Dependent Cell Surface Discrimination and the Role of the Lipid Rafts. 429-435
• 
  Mali Abdollahian, R. Foroughi: Optimal Statistical Model for Forecasting Air Quality Data. 436-442
• 
  Thomas A. Pushchak, Sreela Sasi: Rating Visual Capability for Computer Access with a Fuzzy Rule-Based Model. 443-446
• 
  Yu-Cheng Huang, Yu-Chih Chao, Shwu-Bin Lin, Huai-Kuang Tsai, Chun-Fan Chang, Sheng-An Lee, Cheng-Yan Kao: A Tool to Determine the Specificity of Antisense Oligonucleotide. 447-449
• 
  Haluk Resat: EGF Receptor Sorting in Endosomal Compartments. 451-457
• 
  Tarek K. Alameldin, Preston J. Cooper, Amitesh Sinha: A Practical and Efficient Web-Based Dermatology System. 458-462
• 
  Craig Lucas, Andrew J. Bulpitt: Automatic Identification of Key Sub-Structures for Protein Annotation. 463-466
• 
  Herbert Ramoser, Jürgen Biber, Ivan Bajla, Igor Holländer: Segmentation of Electrophoretic Images in Doping Control. 467-470

Late Papers

• 
  Joel C. Hunter, Joshua N. Adkins, Joel G. Pounds, John H. Miller: Facilitating interpretation of mass spectrometry based proteomics data. 471-477
• 
  Nikos A. Kanlis, Shihab A. Shamma, Jonathan Z. Simon, Didier A. Depireux: Realistic Model on the Blind Separation of Convolved Information Sources. 478-485
• 
  Hsuan-Hung Lin, Yung-fu Chen, Tainsong Chen, Tze-Tung Tsai: Piecewise Fittings of the Saccadic Velocity Profiles Using the Rational Power Functions. 486-489
• 
  Mohamad Saraee, Tim Ritchings: Medical Data Mining: Case of Cervical Cancer Screening. 490
• 
  Han Liu: An Extended Linear Strategy Bridging the Gap between Regression and SVD Decomposition for Modeling Peptide Tandem Mass Spectrometry Data. 491
• 
  Yan Zhao, Xiaolin Tian, Zesheng Tang: Algorithm Design with MATLAB for Cryosection Image Processing. 492-498
• 
  Madjid Fathi, Ursula Wellen, Hamid Garmestani: Software Support for Classifications of MRI Images. 499-502
• 
  Durga Yeluri, Hamid R. Arabnia, Steven Budsberg, Guigen Zhang: Using Pattern Recognition Techniques in the Gait Analysis to Determine Osteoarthritis in Dogs. 503-511
• 
  Rashed Chowdhury, Gillian Pearce, Helen Ashdown: A Pilot Study into the use of HCI in Replacing Drug Treatment Charts for Use With Patients. 512-514
• 
  Luis E. Selva, Usha Sinha, Siamak Ardekani, Mary Brennan: Automated Processing of Diffusion Tensor Data for Intergration Within a PAC System. 515-

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