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Christopher J. Rawlings, Dominic A. Clark, Russ B. Altman, Lawrence Hunter, Thomas Lengauer, Shoshana J. Wodak (Eds.): Proceedings of the Third International Conference on Intelligent Systems for Molecular Biology, Cambridge, United Kingdom, July 16-19, 1995. AAAI 1995 ISBN 0-929280-83-0- Friedrich Ackermann, Grit Herrmann, Franz Kummert, Stefan Posch, Gerhard Sagerer, Dietmar Schomburg: Protein Docking: Combining Symbolic Descriptions of Molecular Surfaces and Grid-Based Scoring Functions. 3-11
- Steven C. Bagley, Liping Wei, Carol Cheng, Russ B. Altman: Characterizing Oriented Protein Structural Sites Using Biochemical Properties. 12-20
- Timothy L. Bailey, Charles Elkan: The Value of Prior Knowledge in Discovering Motifs with MEME. 21-29
- Pierre Baldi, Søren Brunak, Yves Chauvin, Jacob Engelbrecht, Anders Krogh: Periodic Sequence Patterns in Human Exons. 30-38
- Pierre Baldi, Yves Chauvin: Protein Modeling with Hybrid Hidden Markov Model/Neural Network Architectures. 39-47
- Ellen R. Bergeman, Mark Graves, Charles B. Lawrence: Viewing Genome Data as Objects for Application Development. 48-56
- Steven E. Brenner, Tim J. P. Hubbard: A Specification for Defining and Annotating Regions of Macromolecular Structures. 66-74
- Robert B. Cary, Gary D. Stormo: Graph-Theoretic Approach to RNA Modeling Using Comparative Data. 75-80
- Rita Casadio, Mario Compiani, Piero Fariselli, Francesco Vivarelli: Predicting Free Energy Contribution to the Conformational Stability of Folded Proteins From the Residue Sequence with Radial Basis Function Networks. 81-88
- Denise E. Cooke, John E. Hunt: Recognising Promoter Sequences Using An Artificial Immune System. 89-97
- Mark Craven, Richard J. Mural, Loren J. Hauser, Edward C. Uberbacher: Predicting Protein Folding Classes without Overly Relying on Homology. 98-106
- Andreas W. M. Dress, Georg Füllen, Sören Perrey: A Divide and Conquer Approach to Multiple Alignment. 107-113
- Sean R. Eddy: Multiple Alignment Using Hidden Markov Models. 114-120
- Terry Gaasterland, Evgeni Selkov: Reconstruction of Metabolic Networks Using Incomplete Information. 127-135
- Leslie Grate: Automatic RNA Secondary Structure Determination with Stochastic Context-Free Grammars. 136-144
- Tal Grossman, Robert M. Farber, Alan S. Lapedes: Neural Net Representations of Empirical Protein Potentials. 154-161
- Simon Handley: Classifying Nucleic Acid Sub-Sequences as Introns or Exons Using Genetic Programming. 162-169
- Klemens Hemm, Karl Aberer, Manfred Hendlich: Constituting a Receptor-Ligand Information Base from Quality-Enriched Data. 170-178
- Liisa Holm, Chris Sander: 3-D Lookup: Fast Protein Structure Database Searches at 90% Reliability. 179-187
- Kevin Karplus: Evaluating Regularizers for Estimating Distributions of Amino Acids. 188-196
- Alexander E. Kel, Y. V. Kondrakhin, Ph. A. Kolpakov, O. V. Kel, Aida G. Romashchenko, Edgar Wingender, Luciano Milanesi, Nikolay A. Kolchanov: Computer Tool FUNSITE for Analysis of Eukaryotic Regulatory Genomic Sequences. 197-205
- Nikolay A. Kolchanov, Oleg V. Vishnevsky, Vladimir N. Babenko, Alexander E. Kel, Ilya N. Shindyalov: Identification of CDNA Sequences by Specific Oligonucleotide Sets - A Computer Tool and Application. 206-214
- Anders Krogh, Graeme J. Mitchison: Maximum Entropy Weighting of Aligned Sequences of Proteins or DNA. 215-221
- Fabrice Lefebvre: An Optimized Parsing Algorithm Well Suited to RNA Folding. 222-230
- Scott Leishman, Peter M. D. Gray, John E. Fothergill: A Constraint-Based Assignment System for Automating Long Side Chain Assignments in Protein 2D NMR Spectra. 231-239
- Eddy Mayoraz, Inna Dubchak, Ilya B. Muchnik: Relation Between Protein Structure, Sequence Homology and Composition of Amino Acids. 240-248
- Claudine Médigue, Thierry Vermat, Gilles Bisson, Alain Viari, Antoine Danchin: Cooperative Computer System For Genome Sequence Analysis. 249-258
- Hitomi Ohkawa, James Ostell, Stephen H. Bryant: MMDB: An ASN.1 Specification for Macromolecular Structure. 259-267
- Simon Parsons: Softening Constraints in Constraint-Based Protein Topology Prediction. 268-276
- Rebecca Parsons, Mark E. Johnson: DNA Sequence Assembly and Genetic Algorithms - New Results and Puzzling Insights. 277-284
- William R. Pearson, Gabriel Robins, Dallas E. Wrege, Tongtong Zhang: A New Approach to Primer Selection in Polymerase Chain Reaction Experiments. 285-291
- Anders Gorm Pedersen, Jacob Engelbrecht: Investigations of Escherichia coli Promoter Sequences with Artificial Neural Networks: New Signals Discovered Upstream of the Transcriptional Startpoint. 292-299
- Matthias Rarey, Bernd Kramer, Thomas Lengauer: Time-Efficient Docking of Flexible Ligands into Active Sites of Proteins. 300-308
- Igor B. Rogozin, Galina V. Glazko, Evgeniy I. Latkin: Subclass Approach for Mutational Spectrum Analysis. 309-313
- Burkhard Rost: TOPITS: Threading One-Dimensional Predictions Into Three-Dimensional Structures. 314-321
- Olivier Schmeltzer: Using Temporal Reasoning for Genome Map Assembly. 332-340
- Thomas Seidl, Hans-Peter Kriegel: Solvent Accessible Surface Representation in a Database System for Protein Docking. 350-358
- Takayoshi Shoudai, Michael Lappe, Satoru Miyano, Ayumi Shinohara, Takeo Okazaki, Setsuo Arikawa, Tomoyuki Uchida, Shinichi Shimozono, Takeshi Shinohara, Satoru Kuhara: BONSAI Garden: Parallel Knowledge Discovery System for Amino Acid Sequences. 359-366
- Victor V. Solovyev, Asaf A. Salamov, Charles B. Lawrence: Identification of Human Gene Structure Using Linear Discriminant Functions and Dynamic Programming. 367-375
- Michael J. E. Sternberg, Hedvig Hegyi, Suhail A. Islam, Jingchu Luo, Robert B. Russell: Towards an Intelligent System for the Automatic Assignment of Domains in Globular Proteins. 376-383
- Ralf Thiele, Ralf Zimmer, Thomas Lengauer: Recursive Dynamic Programming for Adaptive Sequence and Structure Alignment. 384-392
- Michael J. Wise: Neweyes: A System for Comparing Biological Sequences Using the Running Karp-Rabin Greedy String-Tiling Algorithm. 393-401
- Thomas D. Wu, Douglas L. Brutlag: Identification of Protein Motifs Using Conserved Amino Acid Properties and Partitioning Techniques. 402-410
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