8. ISBRA 2012: Dallas, TX, USA
Leonidas G. Bleris, Ion I. Mandoiu, Russell Schwartz, Jianxin Wang (Eds.): Bioinformatics Research and Applications - 8th International Symposium, ISBRA 2012, Dallas, TX, USA, May 21-23, 2012. Proceedings. Springer 2012 Lecture Notes in Computer Science ISBN 978-3-642-30190-2

Daniele Catanzaro, Martine Labbé, Bjarni V. Halldórsson: A Mixed Integer Programming Model for the Parsimonious Loss of Heterozygosity Problem. 24-35
Xi Chen, Chen Wang, Ayesha N. Shajahan, Rebecca B. Riggins, Robert Clarke, Jianhua Xuan: Reconstruction of Transcription Regulatory Networks by Stability-Based Network Component Analysis. 36-47
Ralph W. Crosby, Tiffani L. Williams: A Fast Algorithm for Computing the Quartet Distance for Large Sets of Evolutionary Trees. 60-71
Peter Damaschke, Leonid Molokov: Error Propagation in Sparse Linear Systems with Peptide-Protein Incidence Matrices. 72-83
Bhaskar DasGupta: Models and Algorithmic Tools for Computational Processes in Cellular Biology: Recent Developments and Future Directions - (Invited Keynote Talk). 84-86
Akshay Deepak, Jianrong Dong, David Fernández-Baca: Identifying Rogue Taxa through Reduced Consensus: NP-Hardness and Exact Algorithms. 87-98
Cynthia Gibas: Analytics Approaches for the Era of 10, 000* Genomes *and Counting. 99-101
Pawel Górecki, J. Gordon Burleigh, Oliver Eulenstein: GTP Supertrees from Unrooted Gene Trees: Linear Time Algorithms for NNI Based Local Searches. 102-114
Pawel Górecki, Oliver Eulenstein: A Robinson-Foulds Measure to Compare Unrooted Trees with Rooted Trees. 115-126
Fei Guo, Shuai Cheng Li, Lusheng Wang: P-Binder: A System for the Protein-Protein Binding Sites Identification. 127-138
Bonnie Kirkpatrick: Non-identifiable Pedigrees and a Bayesian Solution. 139-152
Juntao Li, Kwok Pui Choi, R. Krishna Murthy Karuturi: Iterative Piecewise Linear Regression to Accurately Assess Statistical Significance in Batch Confounded Differential Expression Analysis. 153-164
Si Li, Kwok Pui Choi, Taoyang Wu, Louxin Zhang: Reconstruction of Network Evolutionary History from Extant Network Topology and Duplication History. 165-176
Victor Missirian, Isabelle Henry, Luca Comai, Vladimir Filkov: POPE: Pipeline of Parentally-Biased Expression. 177-188
Jiri Novák, David Hoksza, Jakub Lokoc, Tomás Skopal: On Optimizing the Non-metric Similarity Search in Tandem Mass Spectra by Clustering. 189-200
Aïda Ouangraoua, Krister M. Swenson, Anne Bergeron: On the Comparison of Sets of Alternative Transcripts. 201-212
Hyun Jung Park, Luay Nakhleh: MURPAR: A Fast Heuristic for Inferring Parsimonious Phylogenetic Networks from Multiple Gene Trees. 213-224
Matteo Re, Giorgio Valentini: Large Scale Ranking and Repositioning of Drugs with Respect to DrugBank Therapeutic Categories. 225-236
Debarka Sengupta, Ujjwal Maulik, Sanghamitra Bandyopadhyay: Score Based Aggregation of microRNA Target Orderings. 237-248
Ambuj K. Singh: Modeling Complex Diseases Using Discriminative Network Fragments - (Invited Keynote Talk). 249
Ayshwarya Subramanian, Stanley Shackney, Russell Schwartz: Novel Multi-sample Scheme for Inferring Phylogenetic Markers from Whole Genome Tumor Profiles. 250-262
André Wehe, J. Gordon Burleigh, Oliver Eulenstein: Algorithms for Knowledge-Enhanced Supertrees. 263-274
Lars Wienbrandt, Daniel Siebert, Manfred Schimmler: Improvement of BLASTp on the FPGA-Based High-Performance Computer RIVYERA. 275-286
Tim Wylie, Binhai Zhu: A Polynomial Time Solution for Protein Chain Pair Simplification under the Discrete Fréchet Distance. 287-298
Junjie Yu, Henry Chi-Ming Leung, Siu-Ming Yiu, Yong Zhang, Francis Y. L. Chin, Nathan Hobbs, Amy Y. X. Wang: Phylogenetic Tree Reconstruction with Protein Linkage. 315-327
Michael Q. Zhang: Computational Modeling of Mammalian Promoters - (Invited Keynote Talk). 330



