IWPACBB 2010: Guimarães, Portugal

Microarrays

• Liliana López Kleine, Víctor Andrés Vera Ruiz:
  Highlighting Differential Gene Expression between Two Condition Microarrays through Heterogeneous Genomic Data: Application to Lesihmania infantum Stages Comparison. 1-8
  
• Héctor Gómez, Daniel Glez-Peña, Miguel Reboiro-Jato, Reyes Pavón, Fernando Díaz, Florentino Fdez-Riverola:
  An Experimental Evaluation of a Novel Stochastic Method for Iterative Class Discovery on Real Microarray Datasets. 9-16
  
• Juan Francisco de Paz, Ana Belén Gil, Emilio Corchado:
  Automatic Workflow during the Reuse Phase of a CBP System Applied to Microarray Analysis. 17-24
  
• Miguel Reboiro-Jato, Daniel Glez-Peña, Juan F. Gálvez, Rosalia Laza, Fernando Díaz, Florentino Fdez-Riverola:
  A Comparative Study of Microarray Data Classification Methods Based on Ensemble Biological Relevant Gene Sets. 25-32
  

Data Mining and Data Integration

• Rui Camacho, Rita Ferreira, Natacha Rosa, Vânia Guimarães, Nuno A. Fonseca, Vítor Santos Costa, Miguel de Sousa, Alexandre Magalhães:
  Predicting the Start of Protein alpha-Helices Using Machine Learning Algorithms. 33-41
  
• Orlando Anunciação, Bruno C. Gomes, Susana Vinga, Jorge Gaspar, Arlindo L. Oliveira, José Rueff:
  A Data Mining Approach for the Detection of High-Risk Breast Cancer Groups. 43-51
  
• Alfonso Fernández, Abraham Duarte, Rosa Hernández, Ángel Sánchez:
  GRASP for Instance Selection in Medical Data Sets. 53-60
  
• Sérgio Matos, Joel Arrais, José Luís Oliveira:
  Expanding Gene-Based PubMed Queries. 61-68
  
• Joel Arrais, João E. Pereira, Pedro Lopes, Sérgio Matos, José Luís Oliveira:
  Improving Cross Mapping in Biomedical Databases. 69-76
  
• Wieslaw Chmielnicki, Katarzyna Stapor, Irena Roterman-Konieczna:
  An Efficient Multi-class Support Vector Machine Classifier for Protein Fold Recognition. 77-84
  
• António Gaspar-Cunha:
  Feature Selection Using Multi-Objective Evolutionary Algorithms: Application to Cardiac SPECT Diagnosis. 85-92
  

Phylogenetics and Sequence Analysis

• Gabriel Cardona, Mercè Llabrés, Francesc Rosselló:
  Two Results on Distances for Phylogenetic Networks. 93-100
  
• Vera Afreixo, Adelaide Freitas:
  Cramér Coefficient in Genome Evolution. 101-107
  
• José P. Lousado, José Luís Oliveira, Gabriela R. Moura, Manuel A. S. Santos:
  An Application for Studying Tandem Repeats in Orthologous Genes. 109-115
  
• Mateus Patricio, Federico Abascal, Rafael Zardoya, David Posada:
  Accurate Selection of Models of Protein Evolution. 117-121
  
• Roberto Blanco, Elvira Mayordomo, Esther Montes, Rafael Mayo, Angelines Alberto:
  Scalable Phylogenetics through Input Preprocessing. 123-130
  
• Arnau Mir, Francesc Rosselló:
  The Median of the Distance between Two Leaves in a Phylogenetic Tree. 131-135
  
• María Jesús García-Pereira, Armando Caballero, Humberto Quesada:
  In Silico AFLP: An Application to Assess What Is Needed to Resolve a Phylogeny. 137-141
  
• Sérgio A. D. Deusdado, Paulo Carvalho:
  Employing Compact Intra-genomic Language Models to Predict Genomic Sequences and Characterize Their Entropy. 143-150
  

Biomedical Applications

• Elisangela V. Costa, M. Emília Sousa, J. Rocha, Carlos A. Montanari, M. Madalena Pinto:
  Structure Based Design of Potential Inhibitors of Steroid Sulfatase. 151-156
  
• Ignacio V. Martínez Espinosa, Enrique J. Gómez Aguilera, María E. Hernando Pérez, Ricardo Villares, José Mario Mellado García:
  Agent-Based Model of the Endocrine Pancreas and Interaction with Innate Immune System. 157-164
  
• Sara Silva, Leonardo Vanneschi:
  State-of-the-Art Genetic Programming for Predicting Human Oral Bioavailability of Drugs. 165-173
  
• Andreia Palmeira, Freddy Rodrigues, Emília Sousa, Madalena Pinto, M. Helena Vasconcelos, Miguel X. Fernandes:
  Pharmacophore-Based Screening as a Clue for the Discovery of New P-Glycoprotein Inhibitors. 175-180
  

Bioinformatics Applications

• Joana P. Gonçalves, Sara C. Madeira:
  e-BiMotif: Combining Sequence Alignment and Biclustering to Unravel Structured Motifs. 181-191
  
• Sónia Carneiro, Silas Granato Villas-Bôas, Isabel Rocha, Eugénio C. Ferreira:
  Applying a Metabolic Footprinting Approach to Characterize the Impact of the Recombinant Protein Production in Escherichia coli. 193-200
  
• Miguel Vázquez, Rubén Nogales, Pedro Carmona-Saez, Alberto Pascual, Juan Pavón:
  Rbbt: A Framework for Fast Bioinformatics Development with Ruby. 201-208
  
• José P. Faria, Miguel Rocha, Rick L. Stevens, Christopher S. Henry:
  Analysis of the Effect of Reversibility Constraints on the Predictions of Genome-Scale Metabolic Models. 209-215
  
• Paulo Maia, Marcellinus Pont, Jean-François Tomb, Isabel Rocha, Miguel Rocha:
  Enhancing Elementary Flux Modes Analysis Using Filtering Techniques in an Integrated Environment. 217-224
  
• Leandro S. Marcolino, Bráulio Roberto Gonçalves Marinho Couto, Marcos Augusto dos Santos:
  Genome Visualization in Space. 225-232
  
• José C. Calvo, Julio Ortega, Mancia Anguita:
  A Hybrid Scheme to Solve the Protein Structure Prediction Problem. 233-240
  

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