IJCBS 2009: Shanghai, China

• Abu H. M. Kamal, Xingquan Zhu, Ramaswamy Narayanan:
  Gene Selection for Microarray Expression Data with Imbalanced Sample Distributions. 3-9
  
• Su-Fen Chen, Xue-Qiang Zeng, Guo-Zheng Li, Jack Y. Yang, Mary Qu Yang:
  Redundant Gene Selection Based on Particle Swarm Optimization. 10-16
  
• Hua Dong, Hoicheong Siu, Li Luo, Xiangzhong Fang, Li Jin, Momiao Xiong:
  Investigating Gene and MicroRNA Expression in Glioblastoma. 17-22
  
• Ying Li, Nan Wang, Edward J. Perkins, Ping Gong:
  Discovery of Biomarker Genes from Earthworm Microarray Data by Discriminant Analysis and Clustering. 23-29
  
• Dong-Guk Shin, Seung-Hyun Hong, Pujan Joshi, Ravi Nori, Baikang Pei, Hsin-Wei Wang, Patrick Harrington, Lynn Kuo, Ivo Kalajzic, David W. Rowe:
  PBC: A Software Framework Facilitating Pattern-Based Clustering for Microarray Data Analysis. 30-36
  
• Weijian Xuan, Manhong Dai, Joshua Buckner, Barbara Mirel, Jean Song, Brian D. Athey, Stanley J. Watson, Fan Meng:
  Cross-Domain Neurobiology Data Integration and Exploration. 37-43
  
• Wei Kong, Xiaoyang Mou, Bin Yang:
  Study DNA Microarray Gene Expression Data of Alzheimer's Disease by Independent Component Analysis. 44-47
  
• Peter Tino, Hongya Zhao, Hong Yan:
  Probabilistic Model Based Hough Transform for Detection of Co-expression Patterns in Three-Color cDNA Microarray Data. 48-51
  
• Xiyi Hang:
  Multiclass Gene Selection on Microarray Data Using l1-norm Least Square Regression. 52-55
  
• Jiantao Shi, Kankan Wang, Ji Zhang:
  Framework for Knowledge-Based Integrative Analysis of Microarray Data. 56-59
  
• Hong Cai, Yufeng Wang, Jianying Gu:
  Genome Evolution in Malaria Parasites: I. Core Genome Components. 63-69
  
• Rui Jiang, Feng Zeng, Wangshu Zhang, Xuebing Wu, Zhihong Yu:
  Accelerating Genome-Wide Association Studies Using CUDA Compatible Graphics Processing Units. 70-76
  
• Gaurav Jain, Haozhu Wang, Li Liao, E. Fidelma Boyd:
  Genomic Comparison of Bacterial Species Based on Metabolic Characteristics. 77-83
  
• Timothy G. Lilburn, Hong Cai, Jianying Gu:
  The Core and Pan-Genome of the Vibrionaceae. 84-90
  
• Nikola Stojanovic:
  An Improved Algorithm for the Location of Heaviest Segments in Genomic Sequences. 91-97
  
• Huian Li, David Hart, Matthias S. Müller, Ulf Markwardt, Craig A. Stewart:
  GeneIndex: An Open Source Parallel Program for Enumerating and Locating Words in a Genome. 98-102
  
• Nan Wang, Shane C. Burgess, Mark L. Lawrence, Susan Bridges:
  Proteogenomic Mapping for Structural Annotation of Prokaryote Genomes. 103-106
  
• Monther Aldwairi, Rehab M. Duwairi, Wafa'a Alqarqaz:
  A Classification System for Predicting RNA Hairpin Loops. 109-115
  
• Hong Sun, Tim Van den Bulcke, Bart De Moor, Karen Lemmens, Kristof Engelen, Kathleen Marchal:
  Layout and Post-Processing of Transcriptional Modules. 116-121
  
• Yidong Chen, Hung-I Harry Chen, Yufei Huang:
  Mapping miRNA Regulation to Functional Gene Sets. 122-125
  
• Hehuang Xie, Min Wang, Yuichi Tange, Maria F. Bonaldo, Marcelo Bento Soares:
  A Primer Design Algorithm for Global Analysis of CpG Methylation. 126-130
  
• Chuang Ma, Fangyuan Deng, Hui Liu, Yanhong Zhou:
  Accurate Prediction of Alternatively Spliced Cassette Exons Using Evolutionary Conservation Information and Logitlinear Model. 131-134
  
• Hui Liu, Wei Kong, Tian-Shuang Qiu, Guo-Li Li:
  A Neural Network Based on Rough Set (RSNN) for Prediction of Solitary Pulmonary Nodules. 135-138
  
• Jennifer L. Neary, Yufeng Wang, Timothy G. Lilburn:
  Variation in the Predicted Biosynthetic Capabilities of Seven Vibrionaceae. 139-142
  
• Nian-Fa Gao, Yong Wang, Qiang Gao, Bin-Zhe Wang, Jian Zhang, Bo-Ya Liu:
  Molecular Cloning and Expression of Ppdc-ldhL Fusion Gene in Zymomonas Mobilis ATCC 10988. 143-146
  
• Yulong Zhang, Liang Ji:
  Clustering of SNPs by a Structural EM Algorithm. 147-150
  
• Che-Lun Hung, Chun-Yuan Lin, Yeh-Ching Chung, Chuan Yi Tang:
  A Parallel Algorithm for Three-Profile Alignment Method. 153-159
  
• Rachita Sharma, Patricia A. Evans, Virendra Bhavsar:
  Mapping Transcription Factors from a Model to a Non-model Organism. 160-166
  
• Marc Hellmuth, Daniel Merkle, Martin Middendorf:
  On the Design of RNA Sequences for Realizing Extended Shapes. 167-173
  
• Pavlos Antoniou, Costas S. Iliopoulos, Laurent Mouchard, Solon P. Pissis:
  Practical and Efficient Algorithms for Degenerate and Weighted Sequences Derived from High Throughput Sequencing Technologies. 174-180
  
• Hongwei Huo, Xiaowu Wang, Vojislav Stojkovic:
  An Adaptive Suffix Tree Based Algorithm for Repeats Recognition in a DNA Sequence. 181-184
  
• Hui Liu, Lin Zhang, Shou-Jiang Gao, Yufei Huang:
  A Bayesian Approach for Identifying miRNA Targets by Combining Sequence Prediction and Expression Profiling. 185-189
  
• Kaiqi Xiong, Sang C. Suh, Mary Qu Yang, Jack Y. Yang, Hamid R. Arabnia:
  Next Generation Sequence Analysis Using Genetic Algorithms on Multi-core Technology. 190-191
  
• Suyu Mei, Wang Fei:
  Structural Domain Based Multiple Instance Learning for Predicting Gram-Positive Bacterial Protein Subcellular Localization. 195-200
  
• Shaolei Teng, Anand K. Srivastava, Liangjiang Wang:
  Biological Features for Sequence-Based Prediction of Protein Stability Changes upon Amino Acid Substitutions. 201-206
  
• Gang Chen, Jianxin Wang, Min Li:
  GO Semantic Similarity Based Analysis for Huaman Protein Interactions. 207-210
  
• Jianxin Wang, Lijian Dai, Min Li:
  GO Semantic Similarity-Based False Positive Reduction of Protein-Protein Interactions. 211-214
  
• Stephan Kitchovitch, Ian X. Y. Leung, Yuedong Song, Pietro Liò:
  Using Mutual Information and Models of Evolution for Improved Pattern Petection. 215-221
  
• Bing Zhang, Jing Li, David L. Tabb, Byung-Hoon Park:
  Network Approaches for Shotgun Proteomics Data Analysis. 222
  
• Xin Ma, Jiansheng Wu, Hongde Liu, Xinan Yang, Jianming Xie, Xiao Sun:
  SVM-Based Approach for Predicting DNA-Binding Residues in Proteins from Amino Acid Sequences. 225-229
  
• Hong Cai, Maribel Sanchez, Yufeng Wang, Jianying Gu:
  Putative Cell Cycle Related Genes in Plasmodium Falciparum. 230-236
  
• Zejin Jason Ding, Yan-Qing Zhang, Nan Xie, Yujun George Zheng:
  Identifying New Methylated Arginines via Granular Decision Fusion with SVM Modeling. 237-241
  
• Wangshu Zhang, Feng Zeng, Xuebing Wu, Xuegong Zhang, Rui Jiang:
  A Comparative Study of Ensemble Learning Approaches in the Classification of Breast Cancer Metastasis. 242-245
  
• Liangjiang Wang, Caiyan Huang:
  New Descriptors of Evolutionary Information for Accurate Prediction of DNA and RNA-Binding Residues in Protein Sequences. 246-250
  
• Qiwen Dong, Shuigeng Zhou, Jihong Guan:
  Improving Prediction of the Contact Numbers of Residues in Proteins from Primary Sequences. 251-254
  
• Bin Liu, Lei Lin, Xiaolong Wang, Xuan Wang:
  Protein Remote Homology Detection Using Order Profiles. 255-260
  
• Guixian Xu, Zhendong Niu, Peter Uetz, Xu Gao, Xuping Qin, Hongfang Liu:
  Semi-supervised Learning of Text Classification on Bacterial Protein-Protein Interaction Documents. 263-270
  
• Lei Shi, Young-Rae Cho, Aidong Zhang:
  ANN Based Protein Function Prediction Using Integrated Protein-Protein Interaction Data. 271-277
  
• Jinn-Moon Yang, Yung-Chiang Chen, Yu-Shu Lo:
  3D-interologs: A Protein-Protein Interacting Evolution Database across Multiple Species. 278-285
  
• Jaine K. Blayney, Huiru Zheng, Haiying Wang, Francisco Azuaje:
  Assessing the Most Effective Depth for PPI Analysis. 286-292
  
• Hong Zhang, Yun Xu, YuZhong Zhao:
  Discovery of Motif Pairs from Protein-Protein Interaction Networks. 293-296
  
• Ting Gong, Jianhua Jason Xuan, Rebecca B. Riggins, Robert Clarke:
  A Systems Biology Approach to Identify Affected Regulatory and Signaling Circuits in Protein Interaction Networks. 297-300
  
• Peter C. Y. Chen, Yulin Weng:
  Automaton Models of Computational Genetic Regulatory Networks with Combinatorial Gene-Protein Logical Interactions. 301-307
  
• Fei Li, Yuxing Peng, Wenjian Xu, Guangchuang Yu, Peng Li, Xiaochen Bo, Shengqi Wang:
  Towards a Comprehensive HBV-Human Interaction Map. 311-314
  
• Cem Meydan, Osman Ugur Sezerman, Hasan H. Otu:
  Prediction of Peptides Binding to MHC Class I Alleles by Partial Periodic Pattern Mining. 315-318
  
• Yang Tang, Susan Lee, Marvin D. Nelson Jr., Rex A. Moats:
  MRI Based Fat Segmentation at 7T with Confidence Image. 319-322
  
• Mário João Gonçalves Antunes, Manuel Eduardo Correia:
  An Artificial Immune System for Temporal Anomaly Detection Using Cell Activation Thresholds and Clonal Size Regulation with Homeostasis. 323-326
  
• Armin R. Mikler, Angel Bravo-Salgado, Courtney D. Corley:
  Global Stochastic Contact Modeling of Infectious Diseases. 327-330
  
• Thomas Greve Kristensen, Christian N. S. Pedersen:
  Optimal Overlay of Ligands with Flexible Bonds Using Differential Evolution. 331-334
  
• Tamara Schneider, Armin R. Mikler, Marty O'Neill II:
  Analyzing Response Feasibility for Bioemergencies. 337-343
  
• Wanqing Wu, Jungtae Lee, Haifeng Chen:
  Estimation of Heart Rate Variability Changes during Different Visual Stimulations Using Non-invasive Continuous ECG Monitoring System. 344-347
  
• Arpita Das, Mahua Bhattacharya:
  A Study on Prognosis of Brain Tumors Using Fuzzy Logic and Genetic Algorithm Based Techniques. 348-351
  
• Mohammad Reza Nazari Kousarrizi, AbdolReza Asadi Ghanbari, Mohammad Teshnehlab, Mahdi Aliyari Shoorehdeli, Ali Gharaviri:
  Feature Extraction and Classification of EEG Signals Using Wavelet Transform, SVM and Artificial Neural Networks for Brain Computer Interfaces. 352-355
  
• Shaochun Wu, Duhong Song, Ming-dong Li, Lingyu Xu:
  A Novel Method of De-noising and Classifying on Mental EEG of Imaging Left-Right Hands Movement. 356-359
  
• Courtney D. Corley, Armin R. Mikler:
  A Computational Framework to Study Public Health Epidemiology. 360-363
  
• Dan Xi, Jeffrey D. White:
  Exploring Systems Biology Approaches to Traditional Chinese Medicine Cancer Research. 367-370
  
• Su-Shing Chen, Qingfeng Song, Yu-Ping Wang:
  Genomic Imaging: A Modern Environment for TCM Research. 371-376
  
• Wen-Ran Zhang:
  YinYang Bipolar Relativity - A Unifying Theory of Nature, Agents and Life Science. 377-383
  
• Guoping Liu, Yiqin Wang, Nai-Qing Zhao, Zhaoxiao Xu, Fufeng Li, Ying Dong, Peng Qian:
  Concordance of Diagnosis Based on Zangfu-Organs Syndrome Differentiation by Clinicians of Traditional Chinese Medicine. 384-387
  
• Mingyu You, Lei Ge, Guo-Zheng Li, Liaoyu Xu, Suying Huang:
  A TCM Platform for Maters' Experience Sharing. 388-391
  
• Fufeng Li, Dan Di, Xiaoqiang Li, Yiqin Wang, Peng Qian, Xiaoyan Zheng, Guoping Liu:
  Facial Complexion Acquisition and Recognition System for Clinical Diagnosis in Traditional Chinese Medicine. 392-396
  
• Stefan Jäger, Su-Shing Chen, Wen-Ran Zhang:
  TCM in Innate Immunity: A YinYang-N-Element Hypothesis of the Innate Immunological System. 397-401
  
• Preetam Ghosh, Kalyan Basu, Sajal K. Das, Chaoyang Zhang:
  In-Silico Effects of Mg2+ Diffusion Rates on Stochastic Event Based Simulation of the PhoPQ System. 405-411
  
• Jingchun Sun, Peilin Jia, Zhongming Zhao:
  Global Network Features of Cancer Genes in the Human Interactome. 412-416
  
• Moshe A. Gadish, David K. Y. Chiu, Cecil W. Forsberg, Serguei P. Golovan:
  A Granular Hierarchical Approach to Biophysical and Biochemical Evaluations of Transgenic Modifications. 417-421
  
• Jin Gu, Shao Li, Yang Chen, Yanda Li:
  Integrative Computational Identifications of the Signaling Pathway Network Related to TNF-alpha Stimulus in Vascular Endothelial Cells. 422-427
  
• Jie Zhang, Kun Huang, Yang Xiang, Ruoming Jin:
  Using Frequent Co-expression Network to Identify Gene Clusters for Breast Cancer Prognosis. 428-434
  
• Changjiang Zhang, Wensheng Shen, Bing Zhao, Michael Fannon, Kimberly Forsten-Williams, Jun Zhang:
  A Numerical Study of Pulsatile Flow Through a Hollow Fiber Cartridge: Growth Factor-Receptor Binding and Dissociation Analysis. 435-441
  
• Peilin Jia, Jingchun Sun, Leng Han, Zhongming Zhao:
  Pathway and Network Analysis of Schizophrenia Candidate Genes under Meta-Analysis Linkage Peaks. 442-447
  
• Antonio Sanfilippo, Bob Baddeley, Nathaniel Beagley, Rick Riensche, Banu Gopalan:
  Enhancing Automatic Biological Pathway Generation with GO-Based Gene Similarity. 448-453
  
• Tianhai Tian:
  Estimation of Kinetic Rates of MAP Kinase Activation from Experimental Data. 457-462
  
• Hai Fang, Ji Zhang, Kankan Wang:
  Connecting Biological Themes Using a Single Human Network of Gene Associations. 463-471
  
• Zhengyu Ouyang, Mingzhou Song:
  Statistical Analysis of Discrete Dynamical System Models for Biological Networks. 472-478
  
• Hong Liu, Haodi Feng, Daming Zhu:
  Parameterized Complexity of Finding Elementary Modes in Metabolic Networks. 479-482
  
• Radu Dobrescu, Loretta Ichim:
  Two Dimensional Modeling and Fractal Characterization of Tumor Vascular Network. 483-486
  
• Vijender Chaitankar, Chaoyang Zhang, Preetam Ghosh, Edward J. Perkins, Ping Gong, Youping Deng:
  Gene Regulatory Network Inference Using Predictive Minimum Description Length Principle and Conditional Mutual Information. 487-490
  
• Fei Li, Yuxing Peng, Wenjian Xu, Peng Li, Xiaochen Bo:
  Dynamic Propagation Properties of Virus-Host Protein Interaction Network. 491-493
  
• Mahesh Visvanathan, Adagarla Bhargav Srinivas, Gerald H. Lushington, Sitta Sittampalam:
  Notice of Violation of IEEE Publication PrinciplesSystematically Identifying Genes and Pathways in Multiple Cancer Types Using HGD & PSO-SVM. 494-497
  
• Zhao Zhang, Ning Ye:
  Constraint Projections for Discriminative Support Vector Machines. 501-507
  
• Haini Qu, Yacine Oussar, Gérard Dreyfus, Weisheng Xu:
  Regularized Recurrent Least Squares Support Vector Machines. 508-511
  
• Huilin Xiong, Panfei Shi:
  Similarity Learning via Optimizing the Data-Dependent Kernel. 512-516
  
• Tian-Yu Liu:
  EasyEnsemble and Feature Selection for Imbalance Data Sets. 517-520
  
• Hualong Bu, Shangzhi Zheng, Jing Xia:
  Genetic Algorithm Based Semi-feature Selection Method. 521-524
  
• Dongxiao Niu, Haitao Lv, Yunyun Zhang:
  Combination Forecasting Model for Mid-long Term Load Based on Least Squares Support Vector Machines and a Mended Particle Swarm Optimization Algorithm. 525-528
  
• Xinghua Fan, Zhiyi Guo, Houfeng Ma:
  An Improved EM-Based Semi-supervised Learning Method. 529-532
  
• Zhao Zhang, Ning Ye:
  A Novel Nonlinear Dimensionality Reduction Method for Robust Wood Image Recognition. 533-536
  
• Liu Fang:
  Designing the Self-Adaptive Fuzzy Neural Networks. 537-540
  
• Ming Leng, Lingyu Sun, Songnian Yu:
  An Effective Multi-level Immune Algorithm for Graph Bipartitionin. 543-548
  
• Amparo Albalate, David Suendermann:
  A Combination Approach to Cluster Validation Based on Statistical Quantiles. 549-555
  
• Daniel Hsu, Ben Yang, Shardrom Johnson:
  Collision Description of Clustering. 556-560
  
• Zhi Liu, Guoming Sang, Mingyu Lu:
  A Vector Operation Based Fast Association Rules Mining Algorithm. 561-564
  
• Thomas Mailund, Jesper Nielsen, Christian N. S. Pedersen:
  A Quadratic Time Algorithm for Computing the Quartet Distance between Two General Trees. 565-568
  
• Wei Jiang, Xia Zaho, Qijun Chen:
  Kalman Filtering Design Based on Real-Time Updating of Noise Matrix. 569-572
  
• Kenli Li, Rui Qi, Degui Xiao, Lei Yang, Zhiyong Li:
  Applying Particle Swarm Optimization to Transfer Function Specification for Direct Volume Rendering. 573-576
  
• Yujian Wang, Wenjian Luo:
  PTS-RNSA: A Novel Detector Generation Algorithm for Real-Valued Negative Selection Algorithm. 577-583
  
• Hanxiao Shi, Guodong Zhou, Peide Qian, Xiaojun Li:
  Semantic Role Labeling Based on Dependency Tree with Multi-features. 584-587
  
• Tong Ruan, Zhanquan Wang, Tao Song:
  A Collaborative Car Auto-Navigation Framework Based on Intelligent Trajectory Mining. 591-596
  
• Ju An Wang, Minzhe Guo:
  Security Data Mining in an Ontology for Vulnerability Management. 597-603
  
• Liming Zhang, Yilong Yin, Dong Yang:
  Fingerprint Ridge Distance Estimation Based on Ridge Search. 604-607
  
• Rong Wang, Aiwang Cheng, Wei Du, Zupeng Li:
  An Improved Asymmetric Link Bandwidth Measurement Algorithm. 608-611
  
• Rong Gu, Hongyun Zhang:
  The Application of Improved Immunogenetic Algorithm in Signal Timing. 612-615
  
• Marn-Ling Shing, Chen-chi Shing, Kuo Lane Chen, Huei Lee:
  Modeling Confidentiality in a Simplified Database Access. 616-618
  
• Yao-feng Xue, Hua-Li Sun, Zhi-ting Zhu:
  RFID Dynamic Grouping Anti-collision Algorithm Based on FCM. 619-622
  
• Hui Liu, Jianyi Lin, Qian Li:
  Design of Obstacle Modal Discrimination System Based on the Neural Network. 623-626
  
• Mengyu Qiao, Andrew H. Sung, Qingzhong Liu:
  Feature Mining and Intelligent Computing for MP3 Steganalysis. 627-630
  

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