GCB 2000: Heidelberg, Germany
Erich Bornberg-Bauer, Ursula Rost, Jens Stoye (Eds.): Proceedings of the German Conference on Bioinformatics (GCB 2000), Heidelberg, October 5-7, 2000. Logos Verlag 2000 ISBN 3-89722-498-4
Genome Analysis
Christos A. Ouzounis: A Million Annotations for the Molecular Biologist. 1-2
Alia BenKahla, David L. Robertson, Emmanuel Beaudoing, Jean-Michel Claverie: The Detection of Putative Recombinant Sequences Using BLAST. 3-10
Sudeshna Adak: Adaptive DNASegmentation: An Algorithm for Finding CpG Islands. 11-18
Dirk Husmeier, Frank Wright: Detecting Sporadic Recombination in DNA Alignments with Hidden Markov Models. 19-26
Matthias Frisch, Kornelie Frech, Andreas Klingenhoff, Kerstin Quandt, Ines Liebich, Thomas Werner: A New Tool for the in Silico Prediction of Matrix Attachment Regions in Large Genomic Sequences. 27-34
Artemis G. Hatzigeorgiou: Translation Initiation Site Prediction in Eucariotic MRNAs with High Accuracy. 35-44
Christina Kuttler: An Algorithm for the Prediction of Proteasomal Cleavages. 45-52
Peter Schuster: Principles of Biopolymer Evolution. 53-54
Sequence Analysis
Szymon M. Kielbasa, Jan O. Korbel, Dieter Beule, Johannes Schuchhardt, Hanspeter Herzel: Finding Transcription Factor Binding Sites in Coregulated Genes by Exhaustive Sequence Search. 55-62
Pierre Nicodème: Regexpcount, a Symbolic Package for Counting Problems on Regular Expressions and Words. 63-74
Yuri Tikunov, Alexander E. Kel: Kernel Method for Estimation of Functional Site Local Consensi: Classification of Transcription Initiation Sites in Eukaryotic Genes. 83-88
Roland Fleißner, Dirk Metzler, Arndt von Haeseler: Can One Estimate Distances from Pairwise Sequence Alignments? 89-96
Biochemical Pathways
Monica Riley: Metabolic Pathways in the Context of Genomics. 97-98
Masanori Arita, Kiyoshi Asai, Takaaki Nishioka: Reconstructing Metabolic Pathways with New Enzyme Classification. 99-106
Alexander E. Kel, Igor Deineko, Olga V. Kel-Margoulis, Edgar Wingender, Vadim Ratner: Modeling of Gene Regulatory Network of Cell Cycle Control. Role of E2F Feedback Loops. 107-114
Stefan Schuster, Thomas Pfeiffer, Ferdinand Moldenhauer, Ina Koch, Thomas Dandekar: Structural Analysis of Metabolic Networks: Elementary Flux Modes, Analogy to Petri Nets, and Application to Mycoplasma Pneumoniae. 115-120
Data Management and Analysis
Norman W. Paton: Challenges of Functional Genomic Data for Database Systems. 123-124
Maria Samsonova, Ekaterina Poustelnikova, Andrei Pisarev, John Reinitz: Design of the Integrated Atlas of Segmentation Gene Expression in Situ. 125-132
Gisèle Bronner, Christian Gautier, François Rechenmann: An Entity-association Model for Comparative Maping. 133-138
Evgeni M. Zdobnov, Rodrigo Lopez, Rolf Apweiler, Thure Etzold: The EBI SRS Server: Recent Developments. 139-148
Margaret Biswas, Rolf Apweiler, Wolfgang Fleischmann, Alexander Kanapin, Youla Karavidopoulou, Paul Kersey, Evgenia V. Kriventseva, Virginie Mittard, Nicola J. Mulder, Thomas M. Oinn, Isabelle Phan, Evgeni M. Zdobnov: Proteome Analysis: Application of InterPro and CluSTr for the Functional Classification of Proteins in Whole Genomes. 149-158
Igor Lange, Jörg Zolotukhin: Application of Analysis of Variance Schemes to Expression Data. 159-166
Dieter Beule, Johannes Schuchhardt, Arif Malik, Holger Eickhoff, Hans Lehrach, Hanspeter Herzel: Reliability of Microarray Data and Clustering. 167-174
Structures, Docking, and Folding
Inge Jonassen, Ingvar Eidhammer, Darrell Conklin, William R. Taylor: Structure Motif Discovery and Mining the PDB. 175-182
Johannes Schuchhardt, Liying Dong, Ulrich Hoffmüller, Achim Kramer, Jens Schneider-Mergener, Hanspeter Herzel: Peptide Binding Landscapes. 183-188
Thomas Lengauer: Bioinformatics Problems Along the Process Line from Genomic Data to New Drugs. 189



